Wall clock time and date at job start Mon Mar 30 2020 04:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99971 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40136 * 293.53928 * 9 7 2 11 11 O 1.42100 * 106.40287 * 66.45939 * 9 7 2 12 12 N 1.65599 * 107.21905 * 180.02562 * 9 7 2 13 13 C 1.46581 * 125.29830 * 269.69735 * 12 9 7 14 14 C 1.54405 * 107.10047 * 162.55856 * 13 12 9 15 15 H 1.08999 * 112.62053 * 262.88230 * 14 13 12 16 16 C 1.53847 * 107.98424 * 137.65196 * 14 13 12 17 17 C 1.53613 * 107.36634 * 249.44618 * 16 14 13 18 18 C 1.54043 * 105.89875 * 17.93454 * 17 16 14 19 19 H 1.09000 * 110.36114 * 89.44991 * 18 17 16 20 20 O 1.42898 * 110.36436 * 211.75171 * 18 17 16 21 21 C 1.53462 * 104.88383 * 330.60176 * 18 17 16 22 22 H 1.09002 * 111.67228 * 268.28894 * 21 18 17 23 23 C 1.46591 * 125.30006 * 89.99594 * 12 9 7 24 24 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 25 25 H 1.09006 * 109.89660 * 282.05971 * 13 12 9 26 26 H 1.08997 * 109.89893 * 43.27647 * 13 12 9 27 27 H 1.09003 * 109.86480 * 8.88966 * 16 14 13 28 28 H 1.08994 * 109.86894 * 129.99736 * 16 14 13 29 29 H 1.08993 * 110.17017 * 137.04421 * 17 16 14 30 30 H 1.09003 * 110.16146 * 258.83353 * 17 16 14 31 31 H 0.96707 * 113.99510 * 295.46247 * 20 18 17 32 32 H 1.08997 * 109.74539 * 302.46872 * 23 12 9 33 33 H 1.09004 * 109.74434 * 63.11987 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 16 3.7665 -1.1942 -0.0050 10 8 4.1682 -0.6436 -1.2518 11 8 4.1673 -0.6560 1.2476 12 7 4.2566 -2.7760 -0.0134 13 6 4.5129 -3.5896 1.1786 14 6 4.5061 -5.0670 0.7300 15 1 3.5459 -5.5532 0.9027 16 6 5.6721 -5.7826 1.4337 17 6 6.7174 -6.1210 0.3601 18 6 6.3887 -5.2222 -0.8470 19 1 6.9169 -4.2721 -0.7673 20 8 6.7323 -5.8825 -2.0668 21 6 4.8725 -4.9980 -0.7702 22 1 4.3255 -5.7444 -1.3463 23 6 4.5077 -3.5786 -1.2140 24 1 -0.4850 0.8401 0.0040 25 1 5.4841 -3.3324 1.6016 26 1 3.7284 -3.4235 1.9169 27 1 6.1113 -5.1252 2.1841 28 1 5.3148 -6.6984 1.9045 29 1 7.7194 -5.9028 0.7292 30 1 6.6403 -7.1712 0.0786 31 1 7.6791 -6.0504 -2.1698 32 1 3.6111 -3.6054 -1.8332 33 1 5.3330 -3.1464 -1.7800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156461520.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:00 Heat of formation + Delta-G solvation = -162.235191 kcal Electronic energy + Delta-G solvation = -18639.735961 eV Core-core repulsion = 15597.542528 eV Total energy + Delta-G solvation = -3042.193433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03165 -37.76551 -37.42107 -36.55854 -35.24675 -34.92029 -31.16438 -29.69174 -28.59346 -26.46594 -23.69686 -21.72436 -20.76490 -20.57843 -19.35639 -18.79565 -18.39637 -17.29294 -16.81215 -16.21420 -15.68956 -15.64503 -15.26714 -15.04530 -14.67242 -14.39788 -14.24038 -13.70806 -13.52074 -13.30798 -13.03435 -12.89187 -12.79630 -12.65354 -12.39805 -12.05250 -11.79613 -11.73123 -11.43407 -11.36411 -11.30491 -11.24892 -10.76742 -9.80595 -9.00533 -7.57055 0.01583 1.01510 1.10898 1.18250 1.85826 2.37291 2.44349 3.16238 3.29191 3.39594 3.46669 3.77529 4.04868 4.21001 4.32612 4.38756 4.42272 4.52785 4.59727 4.61664 4.70392 4.87293 4.95770 5.09373 5.11158 5.16769 5.26395 5.34932 5.39628 5.45283 5.69309 5.97265 6.48869 6.96229 8.17557 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.006523 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.281778 B = 4291.733736 C = 4404.459724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.107 3.893 3 Si 0.824 3.176 4 H -0.236 1.236 5 H -0.229 1.229 6 H -0.216 1.216 7 C -1.040 5.040 8 H 0.102 0.898 9 S 2.711 3.289 10 O -1.025 7.025 11 O -1.022 7.022 12 N -1.011 6.011 13 C 0.113 3.887 14 C -0.088 4.088 15 H 0.106 0.894 16 C -0.111 4.111 17 C -0.144 4.144 18 C 0.105 3.895 19 H 0.058 0.942 20 O -0.577 6.577 21 C -0.086 4.086 22 H 0.106 0.894 23 C 0.122 3.878 24 H 0.292 0.708 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.395 0.605 32 H 0.057 0.943 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.723 -13.002 1.335 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.110 4.110 3 Si 0.641 3.359 4 H -0.159 1.159 5 H -0.152 1.152 6 H -0.138 1.138 7 C -1.172 5.172 8 H 0.121 0.879 9 S 2.813 3.187 10 O -1.015 7.015 11 O -1.013 7.013 12 N -0.850 5.850 13 C -0.011 4.011 14 C -0.108 4.108 15 H 0.124 0.876 16 C -0.149 4.149 17 C -0.182 4.182 18 C 0.046 3.954 19 H 0.076 0.924 20 O -0.386 6.386 21 C -0.106 4.106 22 H 0.124 0.876 23 C -0.003 4.003 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.245 0.755 32 H 0.076 0.924 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.454 -12.043 1.242 17.368 hybrid contribution -0.447 0.679 -0.033 0.813 sum 12.007 -11.363 1.208 16.576 Atomic orbital electron populations 1.70014 1.07456 1.30569 1.40285 1.25201 0.95692 1.01525 0.88552 0.87501 0.82906 0.82694 0.82802 1.15921 1.15202 1.13810 1.31053 1.18122 1.01592 1.66450 0.87937 1.00142 0.75645 0.70625 0.72268 1.93419 1.85081 1.76820 1.46215 1.93367 1.85066 1.77153 1.45700 1.58007 1.84012 1.29412 1.13553 1.22251 1.01406 0.90819 0.86660 1.22645 1.01285 0.93611 0.93289 0.87584 1.22059 0.93831 1.01242 0.97800 1.22745 1.00060 1.00704 0.94687 1.22383 0.93670 0.94850 0.84480 0.92402 1.86488 1.31400 1.80831 1.39847 1.22178 0.96414 0.94824 0.97148 0.87613 1.21560 1.00671 0.91489 0.86608 0.89730 0.90684 0.91699 0.90356 0.89199 0.89611 0.89669 0.75498 0.92438 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.46 13.96 21.45 0.30 -50.16 16 2 C 0.11 6.32 5.47 84.66 0.46 6.78 16 3 Si 0.82 41.89 26.55 68.60 1.82 43.71 16 4 H -0.24 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.23 -12.02 5.59 99.48 0.56 -11.46 16 6 H -0.22 -9.61 7.11 99.48 0.71 -8.90 16 7 C -1.04 -60.70 10.29 67.74 0.70 -60.01 16 8 H 0.10 6.16 8.06 -2.91 -0.02 6.14 16 9 S 2.71 140.68 4.42 -56.49 -0.25 140.43 16 10 O -1.02 -56.79 15.56 -128.00 -1.99 -58.78 16 11 O -1.02 -55.45 16.41 -128.00 -2.10 -57.55 16 12 N -1.01 -40.92 3.67 -512.58 -1.88 -42.80 16 13 C 0.11 3.64 6.39 86.84 0.56 4.20 16 14 C -0.09 -2.10 4.06 -9.49 -0.04 -2.13 16 15 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 16 C -0.11 -1.85 6.33 31.09 0.20 -1.65 16 17 C -0.14 -2.17 6.51 31.15 0.20 -1.96 16 18 C 0.11 2.21 3.67 31.10 0.11 2.32 16 19 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 20 O -0.58 -11.53 13.36 -148.98 -1.99 -13.52 16 21 C -0.09 -2.21 3.33 -10.06 -0.03 -2.25 16 22 H 0.11 2.59 8.12 -2.39 -0.02 2.57 16 23 C 0.12 4.25 6.47 86.40 0.56 4.81 16 24 H 0.29 15.48 8.31 -92.70 -0.77 14.71 16 25 H 0.08 2.18 7.18 -2.38 -0.02 2.16 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 1.25 7.10 -2.39 -0.02 1.23 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.14 8.11 -2.39 -0.02 1.12 16 31 H 0.40 4.16 9.12 -74.05 -0.68 3.49 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.21 7.59 -2.38 -0.02 2.19 16 Total: -1.00 -73.13 278.22 -3.08 -76.21 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.29 Total: 12.37 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 2.72 Total: -49.90 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -1.58 Total: -92.96 kcal Atomic # 8 Polarization: -123.77 SS G_CDS: -6.08 Total: -129.85 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.82 Total: 43.71 kcal Atomic # 16 Polarization: 140.68 SS G_CDS: -0.25 Total: 140.43 kcal Total: -73.13 -3.08 -76.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156461520.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.026 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds