Wall clock time and date at job start Mon Mar 30 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99683 * 2 1 4 4 C 1.50704 * 109.46731 * 180.02562 * 3 2 1 5 5 C 1.29447 * 117.69643 * 359.97438 * 4 3 2 6 6 C 1.50321 * 123.65501 * 180.88030 * 5 4 3 7 7 N 1.47004 * 109.16303 * 349.02848 * 6 5 4 8 8 S 1.65607 * 121.37242 * 222.94774 * 7 6 5 9 9 O 1.42097 * 106.40132 * 336.45717 * 8 7 6 10 10 O 1.42107 * 106.39904 * 203.53989 * 8 7 6 11 11 C 1.76199 * 107.21942 * 89.99889 * 8 7 6 12 12 H 1.08000 * 119.99782 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99956 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99957 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47191 * 120.00067 * 15 13 11 18 18 H 1.48501 * 109.47170 * 240.00067 * 15 13 11 19 19 C 1.47337 * 117.25226 * 43.21785 * 7 6 5 20 20 C 1.49975 * 117.69212 * 180.02562 * 4 3 2 21 21 H 1.09002 * 109.46930 * 59.99725 * 1 2 3 22 22 H 1.08994 * 109.47184 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47323 * 300.00309 * 1 2 3 24 24 H 1.08995 * 109.47501 * 60.00179 * 3 2 1 25 25 H 1.09001 * 109.47564 * 300.00011 * 3 2 1 26 26 H 1.08004 * 118.17293 * 0.90965 * 5 4 3 27 27 H 1.09004 * 109.52640 * 229.11996 * 6 5 4 28 28 H 1.09000 * 109.52035 * 108.92952 * 6 5 4 29 29 H 0.97000 * 119.99617 * 179.97438 * 14 13 11 30 30 H 1.08994 * 109.78090 * 57.53753 * 19 7 6 31 31 H 1.09003 * 109.78088 * 178.34872 * 19 7 6 32 32 H 1.08998 * 109.31504 * 281.26147 * 20 4 3 33 33 H 1.09003 * 109.31383 * 40.69205 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.0218 -0.0036 -0.0005 6 6 5.4998 -0.2773 0.0181 7 7 6.2259 0.9767 -0.2290 8 16 7.5310 1.0311 -1.2471 9 8 8.0556 -0.2885 -1.2977 10 8 8.3006 2.1589 -0.8529 11 6 6.9192 1.3856 -2.8610 12 1 5.8593 1.5200 -3.0192 13 6 7.7934 1.4914 -3.9218 14 7 9.0841 1.3282 -3.7290 15 14 7.1449 1.8679 -5.6326 16 1 5.6671 2.0060 -5.5826 17 1 7.7447 3.1354 -6.1215 18 1 7.5072 0.7611 -6.5540 19 6 5.7485 2.1820 0.4711 20 6 4.3122 2.4552 -0.0001 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.3472 -0.8469 -0.0151 27 1 5.7463 -1.0003 -0.7596 28 1 5.7839 -0.6769 0.9916 29 1 9.6991 1.4023 -4.4754 30 1 5.7596 2.0120 1.5476 31 1 6.3878 3.0296 0.2242 32 1 4.3341 2.8680 -1.0087 33 1 3.8448 3.1757 0.6712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228994900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:17 Heat of formation + Delta-G solvation = -118.313906 kcal Electronic energy + Delta-G solvation = -18283.650485 eV Core-core repulsion = 15243.361622 eV Total energy + Delta-G solvation = -3040.288863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.78613 -37.17815 -35.25409 -33.92779 -33.11893 -32.59547 -30.61648 -27.62738 -26.08614 -25.72385 -23.53912 -22.44417 -18.97326 -17.82243 -16.91481 -16.34063 -16.29924 -15.93295 -15.40631 -14.96595 -14.65551 -14.26954 -13.78494 -13.38016 -13.24546 -12.84562 -12.65769 -12.06255 -11.97017 -11.65261 -11.61023 -11.25134 -11.21294 -10.90795 -10.65387 -10.56003 -10.26322 -10.13657 -9.97088 -9.86810 -9.22667 -8.87019 -8.48532 -8.14709 -6.66203 -5.27295 2.29451 2.52123 3.07248 3.15448 3.23226 3.67298 4.08574 4.58250 4.67261 4.96035 5.15483 5.18121 5.25840 5.34753 5.43368 5.49106 5.58235 5.61522 5.81671 5.90470 5.92150 6.10449 6.19665 6.24110 6.34572 6.53081 6.60965 6.89465 7.12934 7.36461 7.38731 7.61617 8.04059 8.93271 10.27320 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.006980 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.208828 B = 4010.239198 C = 4654.567827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.098 3.902 4 C -0.136 4.136 5 C -0.139 4.139 6 C 0.157 3.843 7 N -1.015 6.015 8 S 2.717 3.283 9 O -1.004 7.004 10 O -1.004 7.004 11 C -1.016 5.016 12 H 0.102 0.898 13 C 0.133 3.867 14 N -0.847 5.847 15 Si 0.919 3.081 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.271 1.271 19 C 0.128 3.872 20 C -0.095 4.095 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.290 0.710 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 0.681 6.377 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C 0.021 3.979 4 C -0.136 4.136 5 C -0.159 4.159 6 C 0.031 3.969 7 N -0.850 5.850 8 S 2.818 3.182 9 O -0.994 6.994 10 O -0.995 6.995 11 C -1.150 5.150 12 H 0.121 0.879 13 C -0.085 4.085 14 N -0.477 5.477 15 Si 0.743 3.257 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.196 1.196 19 C 0.002 3.998 20 C -0.134 4.134 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.306 0.358 6.614 14.863 hybrid contribution -1.173 0.538 -1.396 1.901 sum -14.479 0.896 5.219 15.417 Atomic orbital electron populations 1.22713 0.81285 1.02629 0.99800 1.87860 1.19344 1.28078 1.95436 1.21380 0.92146 0.84282 1.00048 1.20462 0.92731 0.95834 1.04596 1.22370 0.96725 0.97885 0.98890 1.20086 0.88539 0.86552 1.01713 1.58410 1.50750 1.13317 1.62552 1.00448 0.70714 0.72927 0.74072 1.93352 1.77066 1.40834 1.88187 1.93346 1.67806 1.53762 1.84543 1.30649 1.03945 1.64411 1.15982 0.87937 1.24750 0.93641 0.89059 1.01039 1.69908 1.02523 1.40343 1.34922 0.86158 0.80014 0.78656 0.80880 1.18652 1.19643 1.19627 1.21330 0.93865 0.88423 0.96182 1.20719 0.95452 0.94572 1.02619 0.94147 0.89718 0.94257 0.92686 0.92569 0.85778 0.88566 0.91350 0.89996 0.92007 0.88566 0.90051 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.02 8.79 -35.23 -0.31 -5.33 16 3 C 0.10 1.21 6.23 36.01 0.22 1.43 16 4 C -0.14 -2.05 5.86 -100.98 -0.59 -2.64 16 5 C -0.14 -2.25 9.31 -35.78 -0.33 -2.59 16 6 C 0.16 2.86 6.50 -5.10 -0.03 2.83 16 7 N -1.02 -21.28 3.29 -114.50 -0.38 -21.66 16 8 S 2.72 73.41 5.01 -107.50 -0.54 72.87 16 9 O -1.00 -29.72 16.98 -57.17 -0.97 -30.69 16 10 O -1.00 -29.41 16.72 -57.17 -0.96 -30.37 16 11 C -1.02 -28.36 9.75 30.60 0.30 -28.06 16 12 H 0.10 2.67 7.81 -52.49 -0.41 2.26 16 13 C 0.13 3.74 5.46 -17.82 -0.10 3.65 16 14 N -0.85 -25.16 13.19 55.43 0.73 -24.43 16 15 Si 0.92 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.13 2.23 6.54 -3.27 -0.02 2.21 16 20 C -0.09 -1.41 5.98 -27.92 -0.17 -1.57 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.12 1.89 6.42 -52.48 -0.34 1.55 16 27 H 0.10 1.84 7.48 -51.93 -0.39 1.46 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.74 7.07 -51.93 -0.37 1.38 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -35.17 291.84 -7.09 -42.26 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.44 Total: 0.44 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 0.39 Total: -23.34 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.35 Total: -46.09 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -2.24 Total: -66.39 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.54 Total: 72.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.17 -7.09 -42.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228994900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.050 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds