Wall clock time and date at job start Mon Mar 30 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99683 * 2 1 4 4 C 1.50704 * 109.46731 * 180.02562 * 3 2 1 5 5 C 1.29447 * 117.69643 * 359.97438 * 4 3 2 6 6 C 1.50321 * 123.65501 * 180.88030 * 5 4 3 7 7 N 1.47004 * 109.16303 * 349.02848 * 6 5 4 8 8 S 1.65607 * 121.37242 * 222.94774 * 7 6 5 9 9 O 1.42097 * 106.40132 * 336.45717 * 8 7 6 10 10 O 1.42107 * 106.39904 * 203.53989 * 8 7 6 11 11 C 1.76199 * 107.21942 * 89.99889 * 8 7 6 12 12 H 1.08000 * 119.99782 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99956 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99957 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47191 * 120.00067 * 15 13 11 18 18 H 1.48501 * 109.47170 * 240.00067 * 15 13 11 19 19 C 1.47337 * 117.25226 * 43.21785 * 7 6 5 20 20 C 1.49975 * 117.69212 * 180.02562 * 4 3 2 21 21 H 1.09002 * 109.46930 * 59.99725 * 1 2 3 22 22 H 1.08994 * 109.47184 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47323 * 300.00309 * 1 2 3 24 24 H 1.08995 * 109.47501 * 60.00179 * 3 2 1 25 25 H 1.09001 * 109.47564 * 300.00011 * 3 2 1 26 26 H 1.08004 * 118.17293 * 0.90965 * 5 4 3 27 27 H 1.09004 * 109.52640 * 229.11996 * 6 5 4 28 28 H 1.09000 * 109.52035 * 108.92952 * 6 5 4 29 29 H 0.97000 * 119.99617 * 179.97438 * 14 13 11 30 30 H 1.08994 * 109.78090 * 57.53753 * 19 7 6 31 31 H 1.09003 * 109.78088 * 178.34872 * 19 7 6 32 32 H 1.08998 * 109.31504 * 281.26147 * 20 4 3 33 33 H 1.09003 * 109.31383 * 40.69205 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.0218 -0.0036 -0.0005 6 6 5.4998 -0.2773 0.0181 7 7 6.2259 0.9767 -0.2290 8 16 7.5310 1.0311 -1.2471 9 8 8.0556 -0.2885 -1.2977 10 8 8.3006 2.1589 -0.8529 11 6 6.9192 1.3856 -2.8610 12 1 5.8593 1.5200 -3.0192 13 6 7.7934 1.4914 -3.9218 14 7 9.0841 1.3282 -3.7290 15 14 7.1449 1.8679 -5.6326 16 1 5.6671 2.0060 -5.5826 17 1 7.7447 3.1354 -6.1215 18 1 7.5072 0.7611 -6.5540 19 6 5.7485 2.1820 0.4711 20 6 4.3122 2.4552 -0.0001 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.3472 -0.8469 -0.0151 27 1 5.7463 -1.0003 -0.7596 28 1 5.7839 -0.6769 0.9916 29 1 9.6991 1.4023 -4.4754 30 1 5.7596 2.0120 1.5476 31 1 6.3878 3.0296 0.2242 32 1 4.3341 2.8680 -1.0087 33 1 3.8448 3.1757 0.6712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228994900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:17 Heat of formation + Delta-G solvation = -145.578459 kcal Electronic energy + Delta-G solvation = -18284.832765 eV Core-core repulsion = 15243.361622 eV Total energy + Delta-G solvation = -3041.471143 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92146 -38.28791 -37.47328 -36.15592 -35.20747 -33.96287 -31.94059 -28.62124 -28.25851 -26.65045 -24.84663 -23.75453 -20.91900 -19.61749 -18.55700 -18.01841 -17.33372 -17.11198 -16.77174 -16.63226 -16.13510 -15.95423 -15.32584 -15.08908 -14.62275 -14.01382 -14.00801 -13.72986 -13.38570 -13.29006 -13.03823 -12.81834 -12.69340 -12.52490 -12.38642 -12.31083 -12.30043 -11.90811 -11.47639 -11.27171 -10.93730 -10.71783 -9.85802 -9.59508 -8.74815 -7.48173 0.28886 1.31268 1.32160 1.32947 1.50209 2.19664 2.56768 2.76267 2.90144 3.75096 3.80327 3.98128 4.21006 4.27142 4.39594 4.41235 4.49600 4.56844 4.58118 4.66691 4.69818 4.75941 4.88084 4.89568 5.00005 5.02062 5.23626 5.29037 5.73950 5.91087 5.92374 6.03598 6.37909 6.77924 8.20686 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.006980 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.208828 B = 4010.239198 C = 4654.567827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.099 3.901 4 C -0.130 4.130 5 C -0.157 4.157 6 C 0.151 3.849 7 N -1.014 6.014 8 S 2.720 3.280 9 O -1.042 7.042 10 O -1.038 7.038 11 C -1.035 5.035 12 H 0.115 0.885 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.989 3.011 16 H -0.249 1.249 17 H -0.256 1.256 18 H -0.259 1.259 19 C 0.116 3.884 20 C -0.093 4.093 21 H 0.047 0.953 22 H 0.094 0.906 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.299 0.701 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 1.573 6.167 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C 0.023 3.977 4 C -0.130 4.130 5 C -0.176 4.176 6 C 0.026 3.974 7 N -0.852 5.852 8 S 2.823 3.177 9 O -1.033 7.033 10 O -1.028 7.028 11 C -1.168 5.168 12 H 0.133 0.867 13 C -0.143 4.143 14 N -0.526 5.526 15 Si 0.808 3.192 16 H -0.172 1.172 17 H -0.181 1.181 18 H -0.184 1.184 19 C -0.009 4.009 20 C -0.132 4.132 21 H 0.066 0.934 22 H 0.112 0.888 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.092 1.250 6.428 17.373 hybrid contribution -0.363 0.260 -1.218 1.297 sum -16.454 1.510 5.210 17.325 Atomic orbital electron populations 1.22912 0.79329 1.03755 1.00934 1.87813 1.21490 1.28427 1.95680 1.21403 0.89985 0.84601 1.01677 1.20781 0.94744 0.95245 1.02271 1.22240 0.94990 0.98993 1.01400 1.20258 0.90117 0.85010 1.01985 1.57911 1.49793 1.15647 1.61880 0.99948 0.71563 0.71657 0.74543 1.93289 1.78835 1.42285 1.88848 1.93288 1.69836 1.54605 1.85081 1.30951 1.04675 1.64409 1.16779 0.86729 1.26018 0.93732 0.88378 1.06158 1.69995 1.04178 1.41591 1.36880 0.85116 0.80021 0.79309 0.74798 1.17231 1.18055 1.18363 1.21681 0.95309 0.86440 0.97449 1.20746 0.93766 0.95542 1.03105 0.93390 0.88755 0.92673 0.90087 0.91632 0.84921 0.90493 0.89624 0.89097 0.89307 0.89939 0.90913 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.56 8.79 -148.98 -1.31 -10.87 16 3 C 0.10 2.11 6.23 71.24 0.44 2.55 16 4 C -0.13 -3.58 5.86 -15.13 -0.09 -3.67 16 5 C -0.16 -4.86 9.31 27.11 0.25 -4.60 16 6 C 0.15 5.52 6.50 85.42 0.56 6.07 16 7 N -1.01 -42.70 3.29 -516.18 -1.70 -44.40 16 8 S 2.72 151.30 5.01 -56.49 -0.28 151.02 16 9 O -1.04 -64.20 16.98 -128.00 -2.17 -66.37 16 10 O -1.04 -62.86 16.72 -128.00 -2.14 -65.00 16 11 C -1.03 -58.42 9.75 67.73 0.66 -57.76 16 12 H 0.11 5.96 7.81 -2.91 -0.02 5.94 16 13 C 0.07 3.95 5.46 84.65 0.46 4.41 16 14 N -0.89 -54.28 13.19 21.45 0.28 -53.99 16 15 Si 0.99 42.05 29.54 68.60 2.03 44.07 16 16 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 19 C 0.12 3.91 6.54 86.42 0.57 4.47 16 20 C -0.09 -2.51 5.98 29.83 0.18 -2.34 16 21 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.13 3.87 6.42 -2.91 -0.02 3.85 16 27 H 0.08 3.06 7.48 -2.38 -0.02 3.04 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.30 16.19 8.31 -92.71 -0.77 15.42 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.08 2.99 7.07 -2.39 -0.02 2.97 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -77.61 291.84 0.08 -77.52 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.10 Total: 17.23 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 4.28 Total: -49.21 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -1.41 Total: -98.39 kcal Atomic # 8 Polarization: -136.62 SS G_CDS: -5.62 Total: -142.24 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 151.30 SS G_CDS: -0.28 Total: 151.02 kcal Total: -77.61 0.08 -77.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228994900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.056 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds