Wall clock time and date at job start Mon Mar 30 2020 04:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29728 * 1 3 3 Si 1.86806 * 119.99630 * 2 1 4 4 H 1.48503 * 109.46969 * 239.99447 * 3 2 1 5 5 H 1.48500 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46682 * 119.99784 * 3 2 1 7 7 C 1.46134 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.40926 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.32889 * 126.62769 * 180.02562 * 9 7 2 11 11 C 1.33999 * 105.58321 * 180.02562 * 10 9 7 12 12 C 1.48446 * 126.21242 * 179.97438 * 11 10 9 13 13 C 1.39316 * 120.11938 * 0.23364 * 12 11 10 14 14 C 1.38021 * 119.88265 * 180.25248 * 13 12 11 15 15 C 1.38322 * 120.11602 * 359.48892 * 14 13 12 16 16 N 1.48020 * 119.88127 * 180.25631 * 15 14 13 17 17 O 1.31699 * 119.99750 * 0.02562 * 16 15 14 18 18 O 1.31698 * 119.99573 * 180.02562 * 16 15 14 19 19 C 1.38327 * 120.24077 * 0.27941 * 15 14 13 20 20 C 1.38024 * 120.11506 * 359.97438 * 19 15 14 21 21 N 1.31536 * 107.57140 * 0.23994 * 11 10 9 22 22 O 1.21289 * 110.38505 * 359.57435 * 21 11 10 23 23 H 0.97007 * 120.00497 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.06202 * 0.02562 * 13 12 11 25 25 H 1.08002 * 119.94618 * 179.77386 * 14 13 12 26 26 H 1.07989 * 119.94214 * 179.97438 * 19 15 14 27 27 H 1.07995 * 120.05802 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2973 0.0000 0.0000 3 14 2.2312 1.6178 0.0000 4 1 3.0851 1.6965 -1.2125 5 1 1.2662 2.7465 0.0006 6 1 3.0849 1.6965 1.2126 7 6 2.0280 -1.2655 0.0006 8 1 3.1080 -1.2655 0.0010 9 6 1.3234 -2.4860 0.0006 10 7 1.8507 -3.7058 0.0015 11 6 0.8087 -4.5483 0.0005 12 6 0.8798 -6.0311 0.0005 13 6 2.1169 -6.6717 0.0064 14 6 2.1773 -8.0506 0.0011 15 6 1.0124 -8.7963 0.0005 16 7 1.0832 -10.2748 0.0005 17 8 2.2540 -10.8779 0.0016 18 8 -0.0245 -10.9871 -0.0006 19 6 -0.2187 -8.1655 -0.0006 20 6 -0.2905 -6.7871 -0.0005 21 7 -0.2885 -3.8229 -0.0062 22 8 -0.0140 -2.6415 -0.0009 23 1 -0.4851 0.8401 -0.0004 24 1 3.0271 -6.0904 0.0116 25 1 3.1359 -8.5482 0.0020 26 1 -1.1251 -8.7524 -0.0015 27 1 -1.2520 -6.2955 -0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236407637.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:39 Heat of formation + Delta-G solvation = 95.247519 kcal Electronic energy + Delta-G solvation = -17788.641089 eV Core-core repulsion = 14518.628649 eV Total energy + Delta-G solvation = -3270.012440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.37792 -40.08706 -38.21447 -34.41546 -34.25972 -34.15195 -32.04521 -31.41378 -30.26814 -26.88414 -26.49722 -23.20993 -23.15417 -21.56319 -20.90307 -18.77303 -18.41171 -18.00018 -16.18283 -16.08056 -15.94816 -15.62167 -15.24415 -14.83772 -14.33147 -13.85323 -13.48190 -13.19710 -12.63150 -12.01892 -11.80971 -11.62167 -11.54149 -11.30654 -11.11202 -10.75647 -10.74276 -10.68617 -10.47563 -10.06558 -9.42992 -9.31362 -9.30812 -8.43757 -7.41214 -5.27073 -0.71767 0.97865 0.99678 1.15515 2.58217 2.79160 2.82497 2.86064 3.30769 3.51727 3.90531 4.23017 4.35796 4.43619 4.68658 4.77744 4.91088 5.02056 5.19011 5.55800 5.60609 5.73490 5.86713 5.89496 6.37770 6.40445 6.50552 6.78940 6.89301 7.58616 7.74717 7.95428 8.11235 9.54526 9.94691 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.065004 B = 0.003755 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.637363 B = 7454.554356 C = 7875.347408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.069 3.931 3 Si 0.943 3.057 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.119 0.881 9 C 0.299 3.701 10 N -0.606 5.606 11 C 0.170 3.830 12 C 0.090 3.910 13 C -0.090 4.090 14 C -0.051 4.051 15 C -0.018 4.018 16 N -0.010 5.010 17 O -0.181 6.181 18 O -0.183 6.183 19 C -0.049 4.049 20 C -0.102 4.102 21 N -0.441 5.441 22 O 0.053 5.947 23 H 0.300 0.700 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.156 0.844 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -4.030 0.013 4.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.454 4.454 8 H 0.137 0.863 9 C 0.113 3.887 10 N -0.351 5.351 11 C -0.100 4.100 12 C 0.088 3.912 13 C -0.111 4.111 14 C -0.070 4.070 15 C -0.106 4.106 16 N 0.467 4.533 17 O -0.374 6.374 18 O -0.375 6.375 19 C -0.069 4.069 20 C -0.123 4.123 21 N -0.169 5.169 22 O 0.000 6.000 23 H 0.112 0.888 24 H 0.179 0.821 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.587 -3.846 0.007 3.891 hybrid contribution 0.271 0.478 0.001 0.550 sum 0.859 -3.368 0.008 3.476 Atomic orbital electron populations 1.69174 1.08642 1.32013 1.26592 1.27563 0.94900 1.02527 0.91109 0.85777 0.79772 0.77147 0.80843 1.17982 1.19626 1.17986 1.19831 0.94539 0.84317 1.46721 0.86285 1.24139 0.79373 0.93873 0.91327 1.72113 1.27391 0.98356 1.37230 1.23067 0.87627 0.94074 1.05203 1.18089 0.93320 0.88819 0.90997 1.21356 0.99073 0.92167 0.98476 1.21042 0.97640 0.93696 0.94615 1.20426 0.97108 0.76135 1.16895 1.50492 1.02516 1.04814 0.95526 1.96255 1.10800 1.74462 1.55871 1.96254 1.19609 1.65679 1.55964 1.20978 0.96425 0.94818 0.94639 1.21303 0.99742 0.91523 0.99698 1.74729 1.23570 0.91154 1.27427 1.85485 1.26102 1.17502 1.70883 0.88775 0.82113 0.82569 0.82636 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.91 12.22 55.96 0.68 -16.23 15 2 C 0.07 1.51 5.66 -15.27 -0.09 1.42 15 3 Si 0.94 15.66 29.64 -169.99 -5.04 10.62 15 4 H -0.26 -4.19 7.11 56.52 0.40 -3.79 15 5 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 6 H -0.26 -4.19 7.11 56.52 0.40 -3.79 15 7 C -0.42 -9.97 9.76 -35.40 -0.35 -10.31 15 8 H 0.12 2.66 7.93 -52.49 -0.42 2.24 15 9 C 0.30 7.74 7.84 -16.27 -0.13 7.61 15 10 N -0.61 -14.92 11.26 -11.57 -0.13 -15.05 15 11 C 0.17 3.85 7.78 -156.55 -1.22 2.63 15 12 C 0.09 1.60 5.88 -104.89 -0.62 0.98 15 13 C -0.09 -1.36 9.70 -39.26 -0.38 -1.74 15 14 C -0.05 -0.67 9.56 -39.63 -0.38 -1.05 15 15 C -0.02 -0.26 6.89 -79.88 -0.55 -0.81 15 16 N -0.01 -0.16 4.98 33.99 0.17 0.01 15 17 O -0.18 -2.96 19.14 -31.57 -0.60 -3.56 15 18 O -0.18 -2.99 19.14 -31.57 -0.60 -3.59 15 19 C -0.05 -0.65 9.56 -39.63 -0.38 -1.03 15 20 C -0.10 -1.53 9.69 -39.26 -0.38 -1.91 15 21 N -0.44 -10.82 11.86 31.45 0.37 -10.44 15 22 O 0.05 1.41 9.86 15.44 0.15 1.56 15 23 H 0.30 5.99 8.27 -40.82 -0.34 5.65 15 24 H 0.16 2.39 7.87 -52.48 -0.41 1.98 15 25 H 0.16 1.75 7.57 -52.49 -0.40 1.36 15 26 H 0.16 1.74 7.57 -52.49 -0.40 1.35 15 27 H 0.16 2.25 7.86 -52.49 -0.41 1.84 15 LS Contribution 268.82 15.07 4.05 4.05 Total: -1.00 -27.39 268.82 -6.58 -33.97 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -1.17 Total: 2.89 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.46 Total: -4.22 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 1.10 Total: -41.72 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -1.06 Total: -5.59 kcal Atomic # 14 Polarization: 15.66 SS G_CDS: -5.04 Total: 10.62 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.39 -6.58 -33.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236407637.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.222 kcal (2) G-P(sol) polarization free energy of solvation -27.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds