Wall clock time and date at job start Mon Mar 30 2020 04:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29728 * 1 3 3 Si 1.86806 * 119.99630 * 2 1 4 4 H 1.48503 * 109.46969 * 239.99447 * 3 2 1 5 5 H 1.48500 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46682 * 119.99784 * 3 2 1 7 7 C 1.46134 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.40926 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.32889 * 126.62769 * 180.02562 * 9 7 2 11 11 C 1.33999 * 105.58321 * 180.02562 * 10 9 7 12 12 C 1.48446 * 126.21242 * 179.97438 * 11 10 9 13 13 C 1.39316 * 120.11938 * 0.23364 * 12 11 10 14 14 C 1.38021 * 119.88265 * 180.25248 * 13 12 11 15 15 C 1.38322 * 120.11602 * 359.48892 * 14 13 12 16 16 N 1.48020 * 119.88127 * 180.25631 * 15 14 13 17 17 O 1.31699 * 119.99750 * 0.02562 * 16 15 14 18 18 O 1.31698 * 119.99573 * 180.02562 * 16 15 14 19 19 C 1.38327 * 120.24077 * 0.27941 * 15 14 13 20 20 C 1.38024 * 120.11506 * 359.97438 * 19 15 14 21 21 N 1.31536 * 107.57140 * 0.23994 * 11 10 9 22 22 O 1.21289 * 110.38505 * 359.57435 * 21 11 10 23 23 H 0.97007 * 120.00497 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.06202 * 0.02562 * 13 12 11 25 25 H 1.08002 * 119.94618 * 179.77386 * 14 13 12 26 26 H 1.07989 * 119.94214 * 179.97438 * 19 15 14 27 27 H 1.07995 * 120.05802 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2973 0.0000 0.0000 3 14 2.2312 1.6178 0.0000 4 1 3.0851 1.6965 -1.2125 5 1 1.2662 2.7465 0.0006 6 1 3.0849 1.6965 1.2126 7 6 2.0280 -1.2655 0.0006 8 1 3.1080 -1.2655 0.0010 9 6 1.3234 -2.4860 0.0006 10 7 1.8507 -3.7058 0.0015 11 6 0.8087 -4.5483 0.0005 12 6 0.8798 -6.0311 0.0005 13 6 2.1169 -6.6717 0.0064 14 6 2.1773 -8.0506 0.0011 15 6 1.0124 -8.7963 0.0005 16 7 1.0832 -10.2748 0.0005 17 8 2.2540 -10.8779 0.0016 18 8 -0.0245 -10.9871 -0.0006 19 6 -0.2187 -8.1655 -0.0006 20 6 -0.2905 -6.7871 -0.0005 21 7 -0.2885 -3.8229 -0.0062 22 8 -0.0140 -2.6415 -0.0009 23 1 -0.4851 0.8401 -0.0004 24 1 3.0271 -6.0904 0.0116 25 1 3.1359 -8.5482 0.0020 26 1 -1.1251 -8.7524 -0.0015 27 1 -1.2520 -6.2955 -0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236407637.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:38 Heat of formation + Delta-G solvation = 78.417829 kcal Electronic energy + Delta-G solvation = -17789.370879 eV Core-core repulsion = 14518.628649 eV Total energy + Delta-G solvation = -3270.742230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.15729 -41.30638 -39.46970 -35.98479 -35.85491 -35.66851 -33.55878 -32.60253 -31.87419 -28.47743 -28.02448 -24.62795 -24.48454 -23.19389 -22.44532 -20.19239 -19.84522 -19.23797 -18.01138 -17.67568 -17.18032 -17.17915 -16.63613 -16.14877 -15.72162 -15.06448 -14.88800 -14.44300 -14.06499 -13.71067 -13.38481 -13.06380 -12.75181 -12.55422 -12.40986 -12.38584 -12.26881 -12.02371 -11.95303 -11.63756 -11.15359 -10.89631 -10.55525 -10.07765 -9.07302 -7.13263 -1.98418 -0.29909 -0.15675 -0.07264 0.95671 1.40799 1.45851 1.58475 1.85602 2.12704 2.39542 2.74158 2.90532 3.16003 3.24769 3.32972 3.52133 3.68826 4.01772 4.21077 4.39894 4.50446 4.61750 4.65213 4.76664 5.09597 5.18824 5.27106 5.52204 5.76912 5.95144 6.14129 6.29442 7.91116 8.10994 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.065004 B = 0.003755 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.637363 B = 7454.554356 C = 7875.347408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.031 3.969 3 Si 1.024 2.976 4 H -0.249 1.249 5 H -0.258 1.258 6 H -0.249 1.249 7 C -0.434 4.434 8 H 0.129 0.871 9 C 0.266 3.734 10 N -0.626 5.626 11 C 0.181 3.819 12 C 0.058 3.942 13 C -0.083 4.083 14 C -0.033 4.033 15 C -0.017 4.017 16 N -0.011 5.011 17 O -0.186 6.186 18 O -0.189 6.189 19 C -0.033 4.033 20 C -0.093 4.093 21 N -0.468 5.468 22 O 0.017 5.983 23 H 0.313 0.687 24 H 0.161 0.839 25 H 0.183 0.817 26 H 0.182 0.818 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -4.149 0.014 4.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.196 4.196 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.182 1.182 6 H -0.173 1.173 7 C -0.470 4.470 8 H 0.146 0.854 9 C 0.082 3.918 10 N -0.372 5.372 11 C -0.090 4.090 12 C 0.055 3.945 13 C -0.103 4.103 14 C -0.052 4.052 15 C -0.104 4.104 16 N 0.466 4.534 17 O -0.378 6.378 18 O -0.380 6.380 19 C -0.052 4.052 20 C -0.114 4.114 21 N -0.202 5.202 22 O -0.030 6.030 23 H 0.126 0.874 24 H 0.179 0.821 25 H 0.200 0.800 26 H 0.199 0.801 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.406 -3.950 0.008 4.193 hybrid contribution 0.017 0.387 0.001 0.387 sum 1.423 -3.563 0.009 3.837 Atomic orbital electron populations 1.69212 1.10446 1.33989 1.25974 1.28691 0.95648 1.05518 0.89735 0.84634 0.78391 0.71917 0.81127 1.17254 1.18217 1.17262 1.20424 0.95343 0.85106 1.46161 0.85350 1.24711 0.79741 0.95035 0.92358 1.72082 1.28179 0.98447 1.38469 1.23775 0.86670 0.96108 1.02416 1.18198 0.95428 0.86469 0.94360 1.21306 0.98106 0.92827 0.98067 1.21187 0.98582 0.92633 0.92837 1.20619 0.97786 0.75589 1.16396 1.50619 1.02392 1.05176 0.95261 1.96260 1.10824 1.74720 1.56039 1.96260 1.19600 1.65970 1.56203 1.21131 0.97207 0.93948 0.92913 1.21276 0.98982 0.92013 0.99109 1.74639 1.24312 0.90825 1.30402 1.85420 1.26328 1.18509 1.72701 0.87389 0.82135 0.80015 0.80107 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.73 12.22 23.13 0.28 -35.45 15 2 C 0.03 1.36 5.66 87.05 0.49 1.85 15 3 Si 1.02 30.81 29.64 68.60 2.03 32.85 15 4 H -0.25 -7.21 7.11 99.48 0.71 -6.50 15 5 H -0.26 -7.18 7.11 99.48 0.71 -6.47 15 6 H -0.25 -7.21 7.11 99.48 0.71 -6.50 15 7 C -0.43 -21.16 9.76 24.98 0.24 -20.91 15 8 H 0.13 5.79 7.93 -2.91 -0.02 5.77 15 9 C 0.27 14.30 7.84 85.26 0.67 14.97 15 10 N -0.63 -31.84 11.26 -305.04 -3.44 -35.27 15 11 C 0.18 8.46 7.78 137.46 1.07 9.53 15 12 C 0.06 2.03 5.88 -20.04 -0.12 1.91 15 13 C -0.08 -2.40 9.70 22.48 0.22 -2.18 15 14 C -0.03 -0.80 9.56 22.24 0.21 -0.59 15 15 C -0.02 -0.44 6.89 36.42 0.25 -0.19 15 16 N -0.01 -0.31 4.98 -46.36 -0.23 -0.54 15 17 O -0.19 -5.59 19.14 3.52 0.07 -5.52 15 18 O -0.19 -5.68 19.14 3.52 0.07 -5.61 15 19 C -0.03 -0.79 9.56 22.24 0.21 -0.58 15 20 C -0.09 -2.70 9.69 22.48 0.22 -2.48 15 21 N -0.47 -23.91 11.86 -56.09 -0.67 -24.58 15 22 O 0.02 0.92 9.86 65.31 0.64 1.56 15 23 H 0.31 12.48 8.27 -92.70 -0.77 11.71 15 24 H 0.16 4.68 7.87 -2.91 -0.02 4.66 15 25 H 0.18 3.47 7.57 -2.91 -0.02 3.45 15 26 H 0.18 3.47 7.57 -2.92 -0.02 3.45 15 27 H 0.16 4.48 7.86 -2.91 -0.02 4.46 15 Total: -1.00 -60.68 268.82 3.47 -57.20 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.24 Total: 14.03 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.47 Total: 1.32 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.05 Total: -95.83 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.78 Total: -9.57 kcal Atomic # 14 Polarization: 30.81 SS G_CDS: 2.03 Total: 32.85 kcal Total: -60.68 3.47 -57.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236407637.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.621 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds