Wall clock time and date at job start Mon Mar 30 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99646 * 2 1 4 4 H 1.48505 * 109.47001 * 269.99764 * 3 2 1 5 5 H 1.48495 * 109.47281 * 29.99815 * 3 2 1 6 6 H 1.48498 * 109.47138 * 150.00123 * 3 2 1 7 7 C 1.37874 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00060 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99863 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.46673 * 299.99698 * 9 7 2 11 11 O 1.42900 * 109.46999 * 59.99959 * 9 7 2 12 12 C 1.52995 * 109.46801 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47088 * 174.99980 * 12 9 7 14 14 N 1.30976 * 126.44063 * 90.26075 * 13 12 9 15 15 C 1.35218 * 105.58066 * 180.15864 * 14 13 12 16 16 C 1.48422 * 126.41232 * 179.90030 * 15 14 13 17 17 C 1.39765 * 120.53555 * 179.71383 * 16 15 14 18 18 C 1.38414 * 118.31388 * 179.73100 * 17 16 15 19 19 C 1.38313 * 119.27998 * 359.97438 * 18 17 16 20 20 N 1.31886 * 121.02537 * 0.02562 * 19 18 17 21 21 C 1.31748 * 121.85535 * 0.02562 * 20 19 18 22 22 N 1.30758 * 107.17282 * 359.64409 * 15 14 13 23 23 O 1.21287 * 110.09776 * 0.22053 * 22 15 14 24 24 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 25 25 H 0.96701 * 113.99605 * 60.00428 * 11 9 7 26 26 H 1.08996 * 109.47422 * 55.00569 * 12 9 7 27 27 H 1.09001 * 109.47538 * 294.99687 * 12 9 7 28 28 H 1.07995 * 120.83864 * 359.70556 * 17 16 15 29 29 H 1.08003 * 120.35866 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.48424 * 179.97438 * 19 18 17 31 31 H 1.07992 * 119.70093 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 1 3.8745 -0.6807 -0.8905 11 8 3.9883 -0.5195 1.1661 12 6 4.0216 -2.6364 0.0001 13 6 5.5234 -2.6382 -0.1243 14 7 6.3858 -2.6131 0.8612 15 6 7.6052 -2.6229 0.2771 16 6 8.9158 -2.6011 0.9734 17 6 10.1079 -2.6206 0.2439 18 6 11.3039 -2.5932 0.9400 19 6 11.2814 -2.5472 2.3221 20 7 10.1403 -2.5298 2.9832 21 6 8.9776 -2.5555 2.3641 22 7 7.4137 -2.6609 -1.0159 23 8 6.2259 -2.6702 -1.2611 24 1 -0.4850 0.8400 0.0004 25 1 3.7033 -0.9225 1.9976 26 1 3.5868 -3.1756 -0.8415 27 1 3.7337 -3.1236 0.9317 28 1 10.0959 -2.6566 -0.8354 29 1 12.2446 -2.6067 0.4095 30 1 12.2127 -2.5261 2.8686 31 1 8.0642 -2.5404 2.9401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236553470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:02 Heat of formation + Delta-G solvation = 54.557498 kcal Electronic energy + Delta-G solvation = -18478.621427 eV Core-core repulsion = 15342.677630 eV Total energy + Delta-G solvation = -3135.943797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.30432 -40.27975 -36.78334 -35.71744 -33.56960 -32.39142 -32.36981 -31.22967 -29.64246 -26.23111 -25.13964 -24.01494 -22.86196 -21.72827 -20.60441 -18.07995 -17.83527 -17.36701 -16.96994 -16.20859 -15.78447 -14.95835 -14.71792 -14.50373 -14.20751 -14.14910 -13.52876 -13.35700 -12.90537 -12.58893 -12.19227 -11.93011 -11.77124 -11.39719 -11.09834 -10.88638 -10.67140 -10.45176 -10.12252 -9.84001 -9.78307 -9.21430 -9.00985 -8.74094 -8.44633 -6.24320 -4.38496 0.42475 0.96703 1.52635 2.55252 3.07864 3.33174 3.43703 3.49489 3.63530 3.68862 4.04223 4.27084 4.44378 4.59042 4.64819 4.82505 4.99493 5.08868 5.32507 5.47488 5.55272 5.70383 5.74446 5.81650 5.88836 5.99262 6.14636 6.33418 6.37659 7.05096 7.36778 7.66814 8.14206 8.31854 8.67911 8.88224 9.38370 10.85455 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.035163 B = 0.004522 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.100770 B = 6190.042336 C = 6466.576102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.089 3.911 3 Si 0.867 3.133 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.218 1.218 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.201 3.799 10 H 0.061 0.939 11 O -0.576 6.576 12 C -0.052 4.052 13 C 0.220 3.780 14 N -0.476 5.476 15 C 0.204 3.796 16 C -0.062 4.062 17 C -0.044 4.044 18 C -0.176 4.176 19 C 0.108 3.892 20 N -0.483 5.483 21 C 0.146 3.854 22 N -0.387 5.387 23 O 0.075 5.925 24 H 0.267 0.733 25 H 0.361 0.639 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.526 -6.102 1.345 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.117 4.117 3 Si 0.693 3.307 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.140 1.140 7 C -0.606 4.606 8 H 0.097 0.903 9 C 0.142 3.858 10 H 0.078 0.922 11 O -0.382 6.382 12 C -0.092 4.092 13 C 0.001 3.999 14 N -0.208 5.208 15 C -0.067 4.067 16 C -0.066 4.066 17 C -0.072 4.072 18 C -0.196 4.196 19 C -0.049 4.049 20 N -0.192 5.192 21 C -0.013 4.013 22 N -0.095 5.095 23 O 0.016 5.984 24 H 0.077 0.923 25 H 0.209 0.791 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.177 0.823 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 19.425 -5.605 1.648 20.285 hybrid contribution -0.245 0.478 -0.817 0.978 sum 19.181 -5.127 0.830 19.871 Atomic orbital electron populations 1.69927 1.06725 1.27757 1.47830 1.24931 0.94605 0.99889 0.92227 0.87070 0.83091 0.81942 0.78555 1.21241 1.21980 1.14015 1.21340 0.88728 0.95267 1.55245 0.90310 1.19786 0.94416 0.84944 0.86621 0.92167 1.86721 1.77823 1.57244 1.16413 1.21363 0.78020 1.04086 1.05716 1.29313 0.99703 0.91999 0.78896 1.71999 0.97645 1.21240 1.29951 1.23611 0.93754 1.02318 0.86983 1.18404 0.88277 1.05563 0.94344 1.21654 0.91036 0.93423 1.01103 1.22086 0.98758 1.02906 0.95805 1.22971 0.96706 0.93486 0.91762 1.67825 0.98209 1.12522 1.40598 1.23021 0.96617 0.91334 0.90355 1.74790 0.95856 1.21778 1.17096 1.85260 1.11883 1.65816 1.35476 0.92301 0.79149 0.87544 0.87273 0.84069 0.84073 0.82255 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 2 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 20.98 26.99 -169.99 -4.59 16.40 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.22 -5.22 5.30 56.52 0.30 -4.92 16 7 C -0.57 -14.43 9.34 -34.44 -0.32 -14.75 16 8 H 0.08 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.20 4.27 2.30 -27.88 -0.06 4.20 16 10 H 0.06 1.34 7.57 -51.93 -0.39 0.94 16 11 O -0.58 -12.32 9.89 -35.23 -0.35 -12.67 16 12 C -0.05 -0.88 5.46 -27.89 -0.15 -1.04 16 13 C 0.22 3.78 7.52 -12.99 -0.10 3.68 16 14 N -0.48 -8.29 11.28 -9.88 -0.11 -8.40 16 15 C 0.20 3.38 7.82 -156.12 -1.22 2.16 16 16 C -0.06 -0.87 5.89 -104.74 -0.62 -1.49 16 17 C -0.04 -0.51 9.83 -38.95 -0.38 -0.89 16 18 C -0.18 -1.55 10.10 -39.49 -0.40 -1.95 16 19 C 0.11 1.03 11.17 -17.50 -0.20 0.84 16 20 N -0.48 -6.06 10.35 -12.98 -0.13 -6.19 16 21 C 0.15 1.96 10.87 -17.20 -0.19 1.77 16 22 N -0.39 -6.57 11.93 30.97 0.37 -6.20 16 23 O 0.07 1.29 11.29 18.03 0.20 1.49 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.36 6.78 9.04 45.56 0.41 7.19 16 26 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 27 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.14 1.49 7.95 -52.49 -0.42 1.07 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.17 2.25 7.89 -52.49 -0.41 1.84 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -31.06 282.13 -5.48 -36.54 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.16 Total: 4.88 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.74 Total: -5.13 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.90 Total: -45.76 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.15 Total: -11.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.59 Total: 16.40 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.06 -5.48 -36.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236553470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.100 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds