Wall clock time and date at job start Mon Mar 30 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99646 * 2 1 4 4 H 1.48505 * 109.47001 * 269.99764 * 3 2 1 5 5 H 1.48495 * 109.47281 * 29.99815 * 3 2 1 6 6 H 1.48498 * 109.47138 * 150.00123 * 3 2 1 7 7 C 1.37874 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00060 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99863 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.46673 * 299.99698 * 9 7 2 11 11 O 1.42900 * 109.46999 * 59.99959 * 9 7 2 12 12 C 1.52995 * 109.46801 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47088 * 174.99980 * 12 9 7 14 14 N 1.30976 * 126.44063 * 90.26075 * 13 12 9 15 15 C 1.35218 * 105.58066 * 180.15864 * 14 13 12 16 16 C 1.48422 * 126.41232 * 179.90030 * 15 14 13 17 17 C 1.39765 * 120.53555 * 179.71383 * 16 15 14 18 18 C 1.38414 * 118.31388 * 179.73100 * 17 16 15 19 19 C 1.38313 * 119.27998 * 359.97438 * 18 17 16 20 20 N 1.31886 * 121.02537 * 0.02562 * 19 18 17 21 21 C 1.31748 * 121.85535 * 0.02562 * 20 19 18 22 22 N 1.30758 * 107.17282 * 359.64409 * 15 14 13 23 23 O 1.21287 * 110.09776 * 0.22053 * 22 15 14 24 24 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 25 25 H 0.96701 * 113.99605 * 60.00428 * 11 9 7 26 26 H 1.08996 * 109.47422 * 55.00569 * 12 9 7 27 27 H 1.09001 * 109.47538 * 294.99687 * 12 9 7 28 28 H 1.07995 * 120.83864 * 359.70556 * 17 16 15 29 29 H 1.08003 * 120.35866 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.48424 * 179.97438 * 19 18 17 31 31 H 1.07992 * 119.70093 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 1 3.8745 -0.6807 -0.8905 11 8 3.9883 -0.5195 1.1661 12 6 4.0216 -2.6364 0.0001 13 6 5.5234 -2.6382 -0.1243 14 7 6.3858 -2.6131 0.8612 15 6 7.6052 -2.6229 0.2771 16 6 8.9158 -2.6011 0.9734 17 6 10.1079 -2.6206 0.2439 18 6 11.3039 -2.5932 0.9400 19 6 11.2814 -2.5472 2.3221 20 7 10.1403 -2.5298 2.9832 21 6 8.9776 -2.5555 2.3641 22 7 7.4137 -2.6609 -1.0159 23 8 6.2259 -2.6702 -1.2611 24 1 -0.4850 0.8400 0.0004 25 1 3.7033 -0.9225 1.9976 26 1 3.5868 -3.1756 -0.8415 27 1 3.7337 -3.1236 0.9317 28 1 10.0959 -2.6566 -0.8354 29 1 12.2446 -2.6067 0.4095 30 1 12.2127 -2.5261 2.8686 31 1 8.0642 -2.5404 2.9401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236553470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:01 Heat of formation + Delta-G solvation = 30.515633 kcal Electronic energy + Delta-G solvation = -18479.663960 eV Core-core repulsion = 15342.677630 eV Total energy + Delta-G solvation = -3136.986330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.59431 -41.14221 -38.45396 -36.98667 -34.82054 -34.41011 -33.36490 -32.23806 -31.14225 -28.01832 -26.19874 -25.07541 -23.95808 -23.22980 -21.99410 -19.66279 -19.16290 -18.72675 -17.97160 -17.16449 -16.86594 -16.81032 -16.41524 -16.13841 -15.19340 -15.11494 -14.87633 -14.72743 -14.20727 -13.98765 -13.65146 -13.15487 -13.04148 -12.99628 -12.79801 -12.46878 -12.22114 -12.15643 -11.48727 -11.11602 -10.85555 -10.79322 -10.64372 -10.26326 -9.95991 -8.34339 -6.48858 -0.55633 0.13048 0.26804 1.35853 1.39609 1.47008 1.74826 1.76417 2.36860 2.43349 2.75088 2.83869 3.04117 3.45457 3.72638 3.80140 3.86196 3.97764 4.12449 4.23462 4.36782 4.41208 4.54739 4.70606 4.83149 4.96303 5.00489 5.08724 5.36246 5.43207 5.56196 6.08742 6.64737 6.82001 7.02261 7.18221 7.33879 8.78832 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.035163 B = 0.004522 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.100770 B = 6190.042336 C = 6466.576102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.038 3.962 3 Si 0.926 3.074 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.058 0.942 9 C 0.206 3.794 10 H 0.053 0.947 11 O -0.583 6.583 12 C -0.040 4.040 13 C 0.218 3.782 14 N -0.487 5.487 15 C 0.205 3.795 16 C -0.091 4.091 17 C -0.049 4.049 18 C -0.159 4.159 19 C 0.112 3.888 20 N -0.505 5.505 21 C 0.136 3.864 22 N -0.396 5.396 23 O 0.068 5.932 24 H 0.267 0.733 25 H 0.374 0.626 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.147 0.853 29 H 0.183 0.817 30 H 0.199 0.801 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.604 -6.250 1.517 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.163 4.163 3 Si 0.751 3.249 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.134 1.134 7 C -0.596 4.596 8 H 0.076 0.924 9 C 0.147 3.853 10 H 0.071 0.929 11 O -0.391 6.391 12 C -0.079 4.079 13 C -0.002 4.002 14 N -0.220 5.220 15 C -0.065 4.065 16 C -0.095 4.095 17 C -0.076 4.076 18 C -0.178 4.178 19 C -0.045 4.045 20 N -0.213 5.213 21 C -0.023 4.023 22 N -0.106 5.106 23 O 0.011 5.989 24 H 0.076 0.924 25 H 0.222 0.778 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.201 0.799 30 H 0.216 0.784 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 22.502 -5.767 1.817 23.300 hybrid contribution -1.052 0.449 -0.824 1.409 sum 21.450 -5.318 0.993 22.122 Atomic orbital electron populations 1.70037 1.08206 1.28369 1.50537 1.25655 0.95078 1.02962 0.92593 0.86179 0.81923 0.78599 0.78210 1.21363 1.22532 1.13421 1.21662 0.91011 0.94060 1.52862 0.92372 1.19569 0.91776 0.87560 0.86401 0.92870 1.86656 1.77616 1.57823 1.17009 1.21132 0.78037 1.01405 1.07367 1.29227 0.99644 0.92259 0.79051 1.72001 0.98241 1.21464 1.30277 1.24094 0.94486 1.01065 0.86902 1.18530 0.88064 1.08251 0.94687 1.21883 0.91105 0.93101 1.01561 1.22517 0.99347 1.00313 0.95599 1.23698 0.97003 0.91196 0.92561 1.67855 0.98747 1.13409 1.41292 1.22893 0.97014 0.92179 0.90189 1.74768 0.95676 1.22796 1.17407 1.85240 1.12079 1.66103 1.35469 0.92373 0.77759 0.85825 0.85872 0.83479 0.79938 0.78436 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 2 C 0.04 2.07 5.47 84.65 0.46 2.53 16 3 Si 0.93 43.57 26.99 68.60 1.85 45.42 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.21 -9.70 5.30 99.48 0.53 -9.17 16 7 C -0.56 -28.26 9.34 25.60 0.24 -28.02 16 8 H 0.06 3.14 7.99 -2.91 -0.02 3.11 16 9 C 0.21 8.53 2.30 29.85 0.07 8.60 16 10 H 0.05 2.31 7.57 -2.39 -0.02 2.29 16 11 O -0.58 -24.16 9.89 -148.98 -1.47 -25.63 16 12 C -0.04 -1.31 5.46 29.85 0.16 -1.15 16 13 C 0.22 7.28 7.52 88.36 0.66 7.94 16 14 N -0.49 -16.65 11.28 -302.52 -3.41 -20.07 16 15 C 0.21 6.67 7.82 137.30 1.07 7.74 16 16 C -0.09 -2.46 5.89 -19.94 -0.12 -2.58 16 17 C -0.05 -1.00 9.83 22.68 0.22 -0.78 16 18 C -0.16 -2.18 10.10 22.33 0.23 -1.95 16 19 C 0.11 1.74 11.17 84.70 0.95 2.68 16 20 N -0.50 -11.70 10.35 -194.98 -2.02 -13.72 16 21 C 0.14 3.56 10.87 84.96 0.92 4.49 16 22 N -0.40 -13.17 11.93 -59.15 -0.71 -13.88 16 23 O 0.07 2.29 11.29 74.57 0.84 3.13 16 24 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.37 13.51 9.04 -74.06 -0.67 12.84 16 26 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 28 H 0.15 2.78 7.95 -2.91 -0.02 2.76 16 29 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.16 4.31 7.89 -2.91 -0.02 4.28 16 Total: -1.00 -66.91 282.13 0.58 -66.33 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.33 Total: 13.67 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 4.87 Total: -0.50 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -5.84 Total: -102.42 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.63 Total: -22.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.85 Total: 45.42 kcal Total: -66.91 0.58 -66.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236553470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.844 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds