Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48492 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46877 * 299.99952 * 3 2 1 6 6 H 1.48496 * 109.46752 * 59.99682 * 3 2 1 7 7 C 1.37876 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00396 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.39935 * 305.46480 * 9 7 2 11 11 C 1.53186 * 109.39661 * 65.20224 * 9 7 2 12 12 S 1.81820 * 108.67761 * 182.76944 * 11 9 7 13 13 O 1.42104 * 108.70320 * 61.93617 * 12 11 9 14 14 O 1.42094 * 108.70309 * 193.28830 * 12 11 9 15 15 C 1.81815 * 101.01868 * 307.68181 * 12 11 9 16 16 C 1.53183 * 108.68040 * 52.31767 * 15 12 11 17 17 N 1.46470 * 109.89895 * 297.36488 * 16 15 12 18 18 C 1.46896 * 110.99949 * 196.99675 * 17 16 15 19 19 C 1.53367 * 114.56545 * 59.05215 * 18 17 16 20 20 O 1.43354 * 88.44442 * 220.41728 * 19 18 17 21 21 C 1.43347 * 88.32032 * 28.15335 * 20 19 18 22 22 H 0.96997 * 119.99933 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.60143 * 302.51872 * 11 9 7 24 24 H 1.08997 * 109.60637 * 63.01212 * 11 9 7 25 25 H 1.09001 * 109.60186 * 172.07537 * 15 12 11 26 26 H 1.09002 * 109.60326 * 292.39757 * 15 12 11 27 27 H 1.08998 * 109.40065 * 177.23181 * 16 15 12 28 28 H 1.09004 * 109.40157 * 57.49593 * 16 15 12 29 29 H 1.09007 * 113.53632 * 193.29110 * 18 17 16 30 30 H 1.09001 * 113.39354 * 105.52288 * 19 18 17 31 31 H 1.08996 * 113.43647 * 335.32370 * 19 18 17 32 32 H 1.08998 * 113.39418 * 86.74681 * 21 20 19 33 33 H 1.09001 * 113.38792 * 216.95087 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5537 -2.5139 0.8394 11 6 0.4713 -2.6376 -1.3096 12 16 -0.4941 -4.1773 -1.2532 13 8 -1.4219 -4.0943 -0.1800 14 8 -0.9671 -4.4667 -2.5615 15 6 0.7966 -5.3810 -0.8163 16 6 1.5333 -4.8798 0.4297 17 7 2.1984 -3.6079 0.1378 18 6 3.2217 -3.3050 1.1473 19 6 4.3260 -4.3618 1.2727 20 8 4.2735 -4.1913 2.6951 21 6 2.8973 -3.8149 2.5569 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2017 -1.7882 -1.4263 24 1 1.1678 -2.6732 -2.1472 25 1 0.3391 -6.3478 -0.6064 26 1 1.4989 -5.4807 -1.6439 27 1 2.2777 -5.6168 0.7312 28 1 0.8184 -4.7369 1.2401 29 1 3.5809 -2.2766 1.1080 30 1 5.2744 -4.0509 0.8344 31 1 4.0162 -5.3537 0.9440 32 1 2.2136 -4.6637 2.5634 33 1 2.5938 -3.0247 3.2436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -56.065872 kcal Electronic energy + Delta-G solvation = -19052.662435 eV Core-core repulsion = 16015.072849 eV Total energy + Delta-G solvation = -3037.589586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74928 -37.16426 -36.18604 -35.35236 -33.38676 -30.93219 -30.24184 -26.71026 -25.90960 -25.87762 -23.25978 -21.05293 -19.22887 -18.09919 -17.28706 -16.41361 -15.91046 -15.81397 -15.49184 -15.30687 -15.04683 -14.84161 -14.16232 -13.58452 -12.87800 -12.66535 -12.51469 -12.23610 -11.98601 -11.70302 -11.51046 -11.36875 -11.29037 -10.99442 -10.93739 -10.75784 -10.49773 -10.43983 -10.22575 -9.87392 -9.31253 -9.02215 -8.68394 -7.71877 -6.35263 -4.43510 0.73744 3.13834 3.23607 3.25417 3.37633 4.04186 4.21496 4.28401 4.36290 4.58108 4.89513 4.97382 5.03786 5.21700 5.34682 5.41596 5.52104 5.58818 5.84920 5.89816 6.01315 6.03834 6.11247 6.23016 6.28177 6.51370 6.75990 7.11140 7.35741 7.48436 7.78370 8.04219 8.62078 9.24118 10.72674 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.011808 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.238426 B = 2370.689752 C = 3911.137187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.227 3.773 10 H 0.036 0.964 11 C -0.542 4.542 12 S 2.375 3.625 13 O -0.950 6.950 14 O -0.971 6.971 15 C -0.600 4.600 16 C 0.059 3.941 17 N -0.540 5.540 18 C 0.048 3.952 19 C 0.021 3.979 20 O -0.374 6.374 21 C -0.014 4.014 22 H 0.269 0.731 23 H 0.154 0.846 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -7.118 0.310 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.094 0.906 9 C 0.120 3.880 10 H 0.053 0.947 11 C -0.677 4.677 12 S 2.562 3.438 13 O -0.947 6.947 14 O -0.968 6.968 15 C -0.728 4.728 16 C -0.070 4.070 17 N -0.265 5.265 18 C -0.061 4.061 19 C -0.056 4.056 20 O -0.291 6.291 21 C -0.092 4.092 22 H 0.079 0.921 23 H 0.171 0.829 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.152 0.848 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.165 0.835 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.860 -7.294 -0.078 8.253 hybrid contribution 0.594 0.917 0.588 1.240 sum 4.454 -6.377 0.510 7.795 Atomic orbital electron populations 1.69851 1.06087 1.27658 1.48319 1.25017 0.94972 0.99710 0.94267 0.86359 0.80024 0.82793 0.77879 1.19431 1.20730 1.20769 1.21083 0.93375 0.88634 1.52166 0.90562 1.18944 0.89903 0.88836 0.90317 0.94682 1.30195 1.12472 1.16449 1.08566 1.09253 0.78532 0.81020 0.74953 1.93535 1.58947 1.86177 1.56041 1.93497 1.79533 1.84807 1.38916 1.30194 1.18107 1.16342 1.08192 1.21801 0.97963 0.93619 0.93631 1.61082 1.16630 1.02593 1.46225 1.24643 0.92123 1.01818 0.87562 1.24041 1.00536 0.99343 0.81717 1.89786 1.26071 1.89758 1.23511 1.24589 0.84699 0.99751 1.00189 0.92109 0.82853 0.86156 0.85959 0.84764 0.89606 0.92923 0.83467 0.89690 0.90683 0.90525 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.84 11.70 55.43 0.65 -22.19 16 2 C 0.06 1.59 5.31 -17.82 -0.09 1.49 16 3 Si 0.90 19.23 29.54 -169.99 -5.02 14.21 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.51 -11.95 7.54 -34.44 -0.26 -12.21 16 8 H 0.08 1.72 5.90 -52.48 -0.31 1.41 16 9 C 0.23 4.84 1.76 -69.00 -0.12 4.72 16 10 H 0.04 0.84 7.93 -51.93 -0.41 0.43 16 11 C -0.54 -10.99 5.70 37.25 0.21 -10.77 16 12 S 2.38 43.69 5.34 -107.50 -0.57 43.11 16 13 O -0.95 -20.68 18.10 -57.81 -1.05 -21.73 16 14 O -0.97 -19.97 18.11 -57.81 -1.05 -21.01 16 15 C -0.60 -8.46 6.58 37.25 0.25 -8.21 16 16 C 0.06 0.89 3.91 -3.96 -0.02 0.87 16 17 N -0.54 -9.47 4.48 -221.77 -0.99 -10.47 16 18 C 0.05 0.80 4.00 -67.34 -0.27 0.53 16 19 C 0.02 0.30 8.26 24.59 0.20 0.51 16 20 O -0.37 -6.13 12.74 -35.23 -0.45 -6.58 16 21 C -0.01 -0.21 8.00 24.59 0.20 -0.02 16 22 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 23 H 0.15 3.50 6.45 -51.93 -0.33 3.17 16 24 H 0.12 2.23 8.14 -51.93 -0.42 1.80 16 25 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.13 1.67 8.14 -51.93 -0.42 1.24 16 27 H 0.09 1.10 5.52 -51.93 -0.29 0.81 16 28 H 0.05 0.83 7.10 -51.93 -0.37 0.46 16 29 H 0.15 2.69 5.40 -51.92 -0.28 2.41 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.96 6.27 -51.93 -0.33 0.63 16 32 H 0.08 1.11 5.74 -51.93 -0.30 0.82 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 271.74 15.07 4.10 4.10 Total: -1.00 -29.92 271.74 -8.16 -38.07 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.86 Total: 5.57 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 0.10 Total: -23.09 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.34 Total: -32.65 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.54 Total: -49.32 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: 43.69 SS G_CDS: -0.57 Total: 43.11 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.92 -8.16 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.994 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds