Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48492 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46877 * 299.99952 * 3 2 1 6 6 H 1.48496 * 109.46752 * 59.99682 * 3 2 1 7 7 C 1.37876 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00396 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.39935 * 305.46480 * 9 7 2 11 11 C 1.53186 * 109.39661 * 65.20224 * 9 7 2 12 12 S 1.81820 * 108.67761 * 182.76944 * 11 9 7 13 13 O 1.42104 * 108.70320 * 61.93617 * 12 11 9 14 14 O 1.42094 * 108.70309 * 193.28830 * 12 11 9 15 15 C 1.81815 * 101.01868 * 307.68181 * 12 11 9 16 16 C 1.53183 * 108.68040 * 52.31767 * 15 12 11 17 17 N 1.46470 * 109.89895 * 297.36488 * 16 15 12 18 18 C 1.46896 * 110.99949 * 196.99675 * 17 16 15 19 19 C 1.53367 * 114.56545 * 59.05215 * 18 17 16 20 20 O 1.43354 * 88.44442 * 220.41728 * 19 18 17 21 21 C 1.43347 * 88.32032 * 28.15335 * 20 19 18 22 22 H 0.96997 * 119.99933 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.60143 * 302.51872 * 11 9 7 24 24 H 1.08997 * 109.60637 * 63.01212 * 11 9 7 25 25 H 1.09001 * 109.60186 * 172.07537 * 15 12 11 26 26 H 1.09002 * 109.60326 * 292.39757 * 15 12 11 27 27 H 1.08998 * 109.40065 * 177.23181 * 16 15 12 28 28 H 1.09004 * 109.40157 * 57.49593 * 16 15 12 29 29 H 1.09007 * 113.53632 * 193.29110 * 18 17 16 30 30 H 1.09001 * 113.39354 * 105.52288 * 19 18 17 31 31 H 1.08996 * 113.43647 * 335.32370 * 19 18 17 32 32 H 1.08998 * 113.39418 * 86.74681 * 21 20 19 33 33 H 1.09001 * 113.38792 * 216.95087 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5537 -2.5139 0.8394 11 6 0.4713 -2.6376 -1.3096 12 16 -0.4941 -4.1773 -1.2532 13 8 -1.4219 -4.0943 -0.1800 14 8 -0.9671 -4.4667 -2.5615 15 6 0.7966 -5.3810 -0.8163 16 6 1.5333 -4.8798 0.4297 17 7 2.1984 -3.6079 0.1378 18 6 3.2217 -3.3050 1.1473 19 6 4.3260 -4.3618 1.2727 20 8 4.2735 -4.1913 2.6951 21 6 2.8973 -3.8149 2.5569 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2017 -1.7882 -1.4263 24 1 1.1678 -2.6732 -2.1472 25 1 0.3391 -6.3478 -0.6064 26 1 1.4989 -5.4807 -1.6439 27 1 2.2777 -5.6168 0.7312 28 1 0.8184 -4.7369 1.2401 29 1 3.5809 -2.2766 1.1080 30 1 5.2744 -4.0509 0.8344 31 1 4.0162 -5.3537 0.9440 32 1 2.2136 -4.6637 2.5634 33 1 2.5938 -3.0247 3.2436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -81.358543 kcal Electronic energy + Delta-G solvation = -19053.759207 eV Core-core repulsion = 16015.072849 eV Total energy + Delta-G solvation = -3038.686358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01153 -38.60260 -37.75529 -36.94631 -35.07413 -32.34531 -31.74769 -28.03547 -27.63004 -27.08592 -24.63389 -22.58811 -20.62208 -19.57327 -18.78315 -17.92072 -17.27460 -17.23968 -16.91053 -16.71069 -16.61895 -16.32600 -15.73574 -14.93149 -14.41620 -14.11653 -13.75527 -13.55210 -13.43440 -13.16919 -13.06525 -12.97578 -12.97064 -12.64326 -12.42136 -12.20370 -12.11417 -11.93612 -11.69215 -11.29055 -10.79533 -10.62174 -10.33626 -9.14220 -8.20993 -6.33084 -0.72890 1.41754 1.46240 1.55268 1.92602 2.38100 2.77079 2.84393 3.07033 3.17242 3.23024 3.58529 3.79286 4.01198 4.16620 4.21801 4.31058 4.40534 4.47032 4.54970 4.73260 4.76036 4.84142 4.97163 5.03518 5.11205 5.30117 5.49141 5.62705 5.92463 6.09817 6.46171 6.81374 7.37815 8.86919 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.011808 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.238426 B = 2370.689752 C = 3911.137187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.231 3.769 10 H -0.001 1.001 11 C -0.555 4.555 12 S 2.387 3.613 13 O -0.991 6.991 14 O -0.994 6.994 15 C -0.565 4.565 16 C 0.046 3.954 17 N -0.534 5.534 18 C 0.032 3.968 19 C 0.034 3.966 20 O -0.388 6.388 21 C -0.012 4.012 22 H 0.265 0.735 23 H 0.119 0.881 24 H 0.134 0.866 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.126 0.874 28 H 0.046 0.954 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -9.577 0.085 11.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.122 3.878 10 H 0.016 0.984 11 C -0.689 4.689 12 S 2.578 3.422 13 O -0.988 6.988 14 O -0.991 6.991 15 C -0.698 4.698 16 C -0.082 4.082 17 N -0.258 5.258 18 C -0.077 4.077 19 C -0.042 4.042 20 O -0.306 6.306 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.137 0.863 24 H 0.152 0.848 25 H 0.182 0.818 26 H 0.184 0.816 27 H 0.144 0.856 28 H 0.064 0.936 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.855 -9.707 -0.311 11.341 hybrid contribution 0.031 1.570 0.692 1.716 sum 5.887 -8.137 0.381 10.051 Atomic orbital electron populations 1.69996 1.07463 1.27858 1.50515 1.25728 0.95484 1.02651 0.94616 0.85506 0.79461 0.79525 0.77207 1.18264 1.21103 1.21304 1.21464 0.93848 0.89688 1.50342 0.89993 1.18665 0.89747 0.89826 0.89521 0.98360 1.30085 1.12633 1.17749 1.08388 1.08556 0.78987 0.80865 0.73772 1.93483 1.61456 1.86898 1.56958 1.93465 1.80710 1.84866 1.40042 1.29957 1.15801 1.15247 1.08834 1.22078 0.98974 0.93207 0.93941 1.61098 1.15721 1.02290 1.46726 1.24630 0.93167 1.01876 0.88036 1.24114 1.00143 0.99467 0.80523 1.89788 1.26056 1.89873 1.24845 1.24622 0.85040 1.00145 0.99262 0.92592 0.86265 0.84815 0.81760 0.81596 0.85580 0.93590 0.85779 0.88175 0.87995 0.88654 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.95 11.70 21.45 0.25 -49.69 16 2 C 0.02 0.78 5.31 84.65 0.45 1.23 16 3 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.51 -24.35 7.54 25.60 0.19 -24.16 16 8 H 0.08 3.70 5.90 -2.91 -0.02 3.68 16 9 C 0.23 9.92 1.76 44.31 0.08 10.00 16 10 H 0.00 -0.06 7.93 -2.39 -0.02 -0.08 16 11 C -0.56 -22.91 5.70 72.04 0.41 -22.49 16 12 S 2.39 85.68 5.34 -56.49 -0.30 85.38 16 13 O -0.99 -43.53 18.10 -127.39 -2.31 -45.84 16 14 O -0.99 -39.93 18.11 -127.39 -2.31 -42.23 16 15 C -0.57 -13.23 6.58 72.04 0.47 -12.76 16 16 C 0.05 1.22 3.91 86.45 0.34 1.56 16 17 N -0.53 -17.54 4.48 -857.55 -3.84 -21.38 16 18 C 0.03 1.01 4.00 45.16 0.18 1.19 16 19 C 0.03 0.85 8.26 63.84 0.53 1.38 16 20 O -0.39 -11.62 12.74 -148.98 -1.90 -13.52 16 21 C -0.01 -0.36 8.00 63.84 0.51 0.15 16 22 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 23 H 0.12 5.77 6.45 -2.39 -0.02 5.76 16 24 H 0.13 4.95 8.14 -2.39 -0.02 4.93 16 25 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.17 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.13 2.42 5.52 -2.39 -0.01 2.41 16 28 H 0.05 1.32 7.10 -2.38 -0.02 1.30 16 29 H 0.12 4.48 5.40 -2.38 -0.01 4.46 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.10 1.99 6.27 -2.39 -0.01 1.97 16 32 H 0.10 2.48 5.74 -2.39 -0.01 2.47 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -66.97 271.74 -4.08 -71.06 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.13 Total: 17.77 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 3.16 Total: -43.91 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -3.59 Total: -71.08 kcal Atomic # 8 Polarization: -95.08 SS G_CDS: -6.51 Total: -101.59 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 85.68 SS G_CDS: -0.30 Total: 85.38 kcal Total: -66.97 -4.08 -71.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.302 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds