Wall clock time and date at job start Mon Mar 30 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47056 * 274.99552 * 3 2 1 5 5 H 1.48496 * 109.46911 * 34.99926 * 3 2 1 6 6 H 1.48496 * 109.46987 * 154.99399 * 3 2 1 7 7 C 1.37880 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99791 * 190.13386 * 7 2 1 9 9 C 1.50693 * 119.99996 * 10.13509 * 7 2 1 10 10 H 1.08997 * 109.60372 * 305.88060 * 9 7 2 11 11 C 1.53188 * 109.59997 * 185.55345 * 9 7 2 12 12 N 1.46476 * 109.89680 * 177.44565 * 11 9 7 13 13 C 1.46898 * 110.99728 * 197.00145 * 12 11 9 14 14 C 1.54033 * 113.81880 * 271.60406 * 13 12 11 15 15 O 1.44440 * 85.42953 * 223.24135 * 14 13 12 16 16 C 1.44176 * 93.37856 * 24.08705 * 15 14 13 17 17 C 1.46471 * 112.46306 * 71.96586 * 12 11 9 18 18 C 1.53181 * 109.82814 * 288.08082 * 17 12 11 19 19 S 1.81633 * 108.76801 * 62.67531 * 18 17 12 20 20 O 1.42106 * 108.71405 * 193.38233 * 19 18 17 21 21 O 1.42099 * 108.72815 * 61.86909 * 19 18 17 22 22 H 0.96999 * 119.99607 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.39953 * 57.31754 * 11 9 7 24 24 H 1.08995 * 109.33222 * 297.53261 * 11 9 7 25 25 H 1.08996 * 113.00129 * 43.43179 * 13 12 11 26 26 H 1.09003 * 113.86431 * 337.34752 * 14 13 12 27 27 H 1.08997 * 113.86771 * 109.04932 * 14 13 12 28 28 H 1.09008 * 113.86535 * 221.77031 * 16 15 14 29 29 H 1.08995 * 113.86499 * 90.06875 * 16 15 14 30 30 H 1.08995 * 109.40251 * 48.16843 * 17 12 11 31 31 H 1.09002 * 109.39866 * 167.98995 * 17 12 11 32 32 H 1.08998 * 109.60182 * 182.35183 * 18 17 12 33 33 H 1.09007 * 109.60129 * 302.83427 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5035 2.6198 0.8030 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0719 -1.2015 0.1640 9 6 1.2686 -2.4888 -0.2308 10 1 0.4462 -2.5733 0.4795 11 6 2.2306 -3.6666 -0.0457 12 7 1.5083 -4.9304 -0.2082 13 6 2.2778 -6.0517 0.3472 14 6 3.2525 -6.6952 -0.6570 15 8 2.7804 -7.9550 -0.1313 16 6 1.5282 -7.3970 0.3151 17 6 1.1370 -5.1878 -1.6016 18 6 0.0093 -4.2403 -2.0223 19 16 0.6162 -2.5310 -1.9274 20 8 -0.4938 -1.6477 -2.0107 21 8 1.6986 -2.3800 -2.8356 22 1 -0.4849 0.8401 -0.0004 23 1 2.6666 -3.6245 0.9524 24 1 3.0241 -3.6048 -0.7904 25 1 2.7286 -5.8220 1.3126 26 1 2.9865 -6.5254 -1.7004 27 1 4.3021 -6.4928 -0.4444 28 1 1.2132 -7.7499 1.2972 29 1 0.7346 -7.4419 -0.4307 30 1 2.0035 -5.0265 -2.2428 31 1 0.7996 -6.2194 -1.7017 32 1 -0.2924 -4.4628 -3.0458 33 1 -0.8416 -4.3644 -1.3524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:30 Heat of formation + Delta-G solvation = -66.540121 kcal Electronic energy + Delta-G solvation = -18926.576403 eV Core-core repulsion = 15888.532620 eV Total energy + Delta-G solvation = -3038.043783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70591 -36.98937 -35.18325 -34.27971 -33.77844 -30.94661 -30.47981 -27.26695 -26.54381 -24.93675 -23.02907 -21.24540 -19.38622 -17.65740 -17.11722 -16.50120 -16.39348 -15.87759 -15.16042 -15.04748 -14.79011 -14.47704 -14.09902 -13.57144 -12.91823 -12.85969 -12.62294 -12.10610 -11.92726 -11.47290 -11.37881 -11.24429 -11.16776 -11.14160 -10.72957 -10.38141 -10.30276 -10.18837 -9.98557 -9.68916 -9.39429 -9.00202 -8.55949 -8.10743 -6.61390 -4.54644 1.59589 3.13489 3.20620 3.21934 3.62111 3.89247 4.07522 4.33088 4.40953 4.83939 4.92300 5.03015 5.09150 5.23196 5.26476 5.44208 5.50162 5.60739 5.67228 5.72497 5.90762 5.91501 6.00254 6.07178 6.19578 6.36849 6.49322 6.88101 7.11955 7.27570 7.35524 7.58598 8.30303 8.86844 10.39183 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.007336 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.498892 B = 3816.117512 C = 4261.777518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.042 3.958 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.086 0.914 9 C -0.335 4.335 10 H 0.112 0.888 11 C 0.072 3.928 12 N -0.546 5.546 13 C 0.031 3.969 14 C -0.007 4.007 15 O -0.384 6.384 16 C 0.037 3.963 17 C 0.074 3.926 18 C -0.638 4.638 19 S 2.281 3.719 20 O -0.945 6.945 21 O -0.989 6.989 22 H 0.283 0.717 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -9.285 2.076 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.173 4.173 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.506 4.506 8 H 0.104 0.896 9 C -0.446 4.446 10 H 0.130 0.870 11 C -0.055 4.055 12 N -0.270 5.270 13 C -0.079 4.079 14 C -0.086 4.086 15 O -0.302 6.302 16 C -0.041 4.041 17 C -0.054 4.054 18 C -0.758 4.758 19 S 2.472 3.528 20 O -0.941 6.941 21 O -0.986 6.986 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.137 0.863 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.186 -8.961 1.488 9.343 hybrid contribution 0.681 0.222 -0.285 0.771 sum 2.867 -8.740 1.203 9.276 Atomic orbital electron populations 1.70003 1.06060 1.29651 1.36347 1.25486 0.95464 1.01304 0.95079 0.86199 0.79953 0.81080 0.79139 1.19495 1.20198 1.18736 1.20978 0.95599 0.88197 1.45822 0.89590 1.27120 1.05367 0.97908 1.14178 0.87018 1.22019 0.94843 0.85786 1.02888 1.61170 1.44685 1.02846 1.18295 1.25043 0.92492 0.90951 0.99371 1.24886 1.00885 0.83402 0.99424 1.89683 1.31229 1.30652 1.78609 1.24252 0.88479 0.90589 1.00749 1.21662 0.96159 0.99501 0.88071 1.30544 1.08254 1.29868 1.07166 1.16576 0.76175 0.76206 0.83888 1.93412 1.53724 1.59366 1.87584 1.93297 1.54622 1.85065 1.65585 0.90620 0.89274 0.93413 0.86297 0.89555 0.89015 0.88743 0.89673 0.93242 0.90328 0.87873 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.18 11.29 55.43 0.63 -20.55 16 2 C 0.04 1.07 5.22 -17.82 -0.09 0.98 16 3 Si 0.91 19.66 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.45 -11.17 8.45 -34.44 -0.29 -11.46 16 8 H 0.09 1.98 7.77 -52.48 -0.41 1.57 16 9 C -0.33 -7.52 2.42 -27.79 -0.07 -7.58 16 10 H 0.11 2.58 8.07 -51.93 -0.42 2.16 16 11 C 0.07 1.31 4.64 -3.96 -0.02 1.29 16 12 N -0.55 -8.67 4.55 -235.05 -1.07 -9.74 16 13 C 0.03 0.40 4.09 -66.63 -0.27 0.13 16 14 C -0.01 -0.09 8.50 37.64 0.32 0.23 16 15 O -0.38 -5.28 12.46 -35.23 -0.44 -5.72 16 16 C 0.04 0.44 8.63 37.64 0.32 0.76 16 17 C 0.07 1.20 3.96 -3.96 -0.02 1.18 16 18 C -0.64 -11.77 6.56 37.25 0.24 -11.52 16 19 S 2.28 54.62 4.54 -107.50 -0.49 54.13 16 20 O -0.95 -26.31 16.13 -57.79 -0.93 -27.24 16 21 O -0.99 -26.10 18.05 -57.79 -1.04 -27.14 16 22 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.09 1.46 7.79 -51.93 -0.40 1.05 16 24 H 0.05 0.87 7.93 -51.93 -0.41 0.46 16 25 H 0.12 1.40 7.87 -51.93 -0.41 0.99 16 26 H 0.09 1.10 5.85 -51.93 -0.30 0.79 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 29 H 0.09 0.99 6.28 -51.93 -0.33 0.66 16 30 H 0.05 0.81 6.88 -51.93 -0.36 0.45 16 31 H 0.08 1.08 5.72 -51.93 -0.30 0.78 16 32 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -31.22 275.42 -8.25 -39.47 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.16 Total: 4.02 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 0.13 Total: -25.99 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: -0.44 Total: -30.30 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -2.41 Total: -60.11 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.49 Total: 54.13 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.22 -8.25 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.067 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds