Wall clock time and date at job start Mon Mar 30 2020 04:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47056 * 274.99552 * 3 2 1 5 5 H 1.48496 * 109.46911 * 34.99926 * 3 2 1 6 6 H 1.48496 * 109.46987 * 154.99399 * 3 2 1 7 7 C 1.37880 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99791 * 190.13386 * 7 2 1 9 9 C 1.50693 * 119.99996 * 10.13509 * 7 2 1 10 10 H 1.08997 * 109.60372 * 305.88060 * 9 7 2 11 11 C 1.53188 * 109.59997 * 185.55345 * 9 7 2 12 12 N 1.46476 * 109.89680 * 177.44565 * 11 9 7 13 13 C 1.46898 * 110.99728 * 197.00145 * 12 11 9 14 14 C 1.54033 * 113.81880 * 271.60406 * 13 12 11 15 15 O 1.44440 * 85.42953 * 223.24135 * 14 13 12 16 16 C 1.44176 * 93.37856 * 24.08705 * 15 14 13 17 17 C 1.46471 * 112.46306 * 71.96586 * 12 11 9 18 18 C 1.53181 * 109.82814 * 288.08082 * 17 12 11 19 19 S 1.81633 * 108.76801 * 62.67531 * 18 17 12 20 20 O 1.42106 * 108.71405 * 193.38233 * 19 18 17 21 21 O 1.42099 * 108.72815 * 61.86909 * 19 18 17 22 22 H 0.96999 * 119.99607 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.39953 * 57.31754 * 11 9 7 24 24 H 1.08995 * 109.33222 * 297.53261 * 11 9 7 25 25 H 1.08996 * 113.00129 * 43.43179 * 13 12 11 26 26 H 1.09003 * 113.86431 * 337.34752 * 14 13 12 27 27 H 1.08997 * 113.86771 * 109.04932 * 14 13 12 28 28 H 1.09008 * 113.86535 * 221.77031 * 16 15 14 29 29 H 1.08995 * 113.86499 * 90.06875 * 16 15 14 30 30 H 1.08995 * 109.40251 * 48.16843 * 17 12 11 31 31 H 1.09002 * 109.39866 * 167.98995 * 17 12 11 32 32 H 1.08998 * 109.60182 * 182.35183 * 18 17 12 33 33 H 1.09007 * 109.60129 * 302.83427 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5035 2.6198 0.8030 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0719 -1.2015 0.1640 9 6 1.2686 -2.4888 -0.2308 10 1 0.4462 -2.5733 0.4795 11 6 2.2306 -3.6666 -0.0457 12 7 1.5083 -4.9304 -0.2082 13 6 2.2778 -6.0517 0.3472 14 6 3.2525 -6.6952 -0.6570 15 8 2.7804 -7.9550 -0.1313 16 6 1.5282 -7.3970 0.3151 17 6 1.1370 -5.1878 -1.6016 18 6 0.0093 -4.2403 -2.0223 19 16 0.6162 -2.5310 -1.9274 20 8 -0.4938 -1.6477 -2.0107 21 8 1.6986 -2.3800 -2.8356 22 1 -0.4849 0.8401 -0.0004 23 1 2.6666 -3.6245 0.9524 24 1 3.0241 -3.6048 -0.7904 25 1 2.7286 -5.8220 1.3126 26 1 2.9865 -6.5254 -1.7004 27 1 4.3021 -6.4928 -0.4444 28 1 1.2132 -7.7499 1.2972 29 1 0.7346 -7.4419 -0.4307 30 1 2.0035 -5.0265 -2.2428 31 1 0.7996 -6.2194 -1.7017 32 1 -0.2924 -4.4628 -3.0458 33 1 -0.8416 -4.3644 -1.3524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:29 Heat of formation + Delta-G solvation = -92.701234 kcal Electronic energy + Delta-G solvation = -18927.710834 eV Core-core repulsion = 15888.532620 eV Total energy + Delta-G solvation = -3039.178215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.74241 -38.32599 -37.16190 -36.27660 -35.57907 -32.55395 -31.86370 -28.59815 -27.47674 -26.52681 -24.51064 -22.73982 -20.58601 -19.33961 -18.86948 -17.93718 -17.40451 -17.07911 -16.83275 -16.79882 -16.39539 -16.03866 -15.77869 -14.99781 -14.34772 -14.13659 -13.91046 -13.68851 -13.34291 -13.06179 -12.95386 -12.72158 -12.67786 -12.44977 -12.34925 -12.26379 -12.12820 -11.89640 -11.56018 -11.25426 -10.87609 -10.53604 -10.35308 -9.35909 -8.49865 -6.48553 -0.23781 1.39782 1.45594 1.53870 2.25218 2.50990 2.58169 2.82166 2.96620 3.34015 3.41972 3.65193 3.90126 3.92302 4.05905 4.12063 4.24039 4.33660 4.43378 4.48492 4.62960 4.73698 4.82926 4.96128 4.97746 5.05378 5.14647 5.20496 5.43148 5.72351 5.92055 5.99577 6.43950 6.98224 8.51579 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.007336 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.498892 B = 3816.117512 C = 4261.777518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.242 1.242 7 C -0.482 4.482 8 H 0.095 0.905 9 C -0.334 4.334 10 H 0.101 0.899 11 C 0.080 3.920 12 N -0.548 5.548 13 C 0.027 3.973 14 C -0.008 4.008 15 O -0.399 6.399 16 C 0.040 3.960 17 C 0.069 3.931 18 C -0.614 4.614 19 S 2.270 3.730 20 O -0.995 6.995 21 O -1.022 7.022 22 H 0.281 0.719 23 H 0.108 0.892 24 H 0.045 0.955 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -11.358 2.651 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.215 4.215 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.165 1.165 7 C -0.531 4.531 8 H 0.113 0.887 9 C -0.446 4.446 10 H 0.119 0.881 11 C -0.049 4.049 12 N -0.273 5.273 13 C -0.081 4.081 14 C -0.087 4.087 15 O -0.317 6.317 16 C -0.037 4.037 17 C -0.059 4.059 18 C -0.740 4.740 19 S 2.466 3.534 20 O -0.991 6.991 21 O -1.019 7.019 22 H 0.090 0.910 23 H 0.126 0.874 24 H 0.063 0.937 25 H 0.151 0.849 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.058 -10.972 2.096 11.581 hybrid contribution 0.383 0.642 -0.509 0.905 sum 3.441 -10.330 1.587 11.003 Atomic orbital electron populations 1.70098 1.07444 1.30003 1.39022 1.26303 0.96062 1.04496 0.94639 0.85465 0.80039 0.77823 0.78475 1.20908 1.19184 1.16468 1.21351 0.96226 0.89102 1.46420 0.88661 1.27016 1.05837 0.99456 1.12301 0.88149 1.21897 0.93626 0.85411 1.03933 1.61104 1.45185 1.02834 1.18143 1.25235 0.92842 0.90095 0.99963 1.24962 1.01646 0.82814 0.99236 1.89685 1.32076 1.31186 1.78801 1.24390 0.88006 0.89306 1.02016 1.21814 0.95222 1.00528 0.88351 1.30203 1.09609 1.24817 1.09405 1.15796 0.75403 0.78121 0.84048 1.93368 1.54815 1.62747 1.88179 1.93258 1.55548 1.86605 1.66451 0.90981 0.87375 0.93686 0.84879 0.89594 0.87740 0.86769 0.89084 0.93247 0.86805 0.85682 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.31 11.29 21.45 0.24 -46.07 16 2 C 0.00 -0.21 5.22 84.66 0.44 0.24 16 3 Si 0.96 40.63 29.55 68.60 2.03 42.66 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.48 -23.88 8.45 25.60 0.22 -23.67 16 8 H 0.10 4.37 7.77 -2.91 -0.02 4.35 16 9 C -0.33 -14.94 2.42 29.91 0.07 -14.87 16 10 H 0.10 4.71 8.07 -2.39 -0.02 4.69 16 11 C 0.08 2.75 4.64 86.45 0.40 3.15 16 12 N -0.55 -15.75 4.55 -908.57 -4.13 -19.88 16 13 C 0.03 0.61 4.09 45.61 0.19 0.80 16 14 C -0.01 -0.18 8.50 72.29 0.61 0.44 16 15 O -0.40 -9.57 12.46 -148.98 -1.86 -11.42 16 16 C 0.04 0.78 8.63 72.30 0.62 1.41 16 17 C 0.07 2.00 3.96 86.45 0.34 2.34 16 18 C -0.61 -21.12 6.56 72.04 0.47 -20.65 16 19 S 2.27 109.05 4.54 -56.49 -0.26 108.80 16 20 O -1.00 -56.97 16.13 -127.41 -2.06 -59.03 16 21 O -1.02 -54.36 18.05 -127.41 -2.30 -56.66 16 22 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 23 H 0.11 3.29 7.79 -2.39 -0.02 3.27 16 24 H 0.04 1.58 7.93 -2.39 -0.02 1.56 16 25 H 0.13 2.61 7.87 -2.39 -0.02 2.59 16 26 H 0.09 1.89 5.85 -2.39 -0.01 1.87 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.09 1.70 6.28 -2.39 -0.02 1.68 16 30 H 0.05 1.47 6.88 -2.39 -0.02 1.45 16 31 H 0.11 2.58 5.72 -2.39 -0.01 2.57 16 32 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 33 H 0.14 4.39 8.14 -2.38 -0.02 4.37 16 Total: -1.00 -68.87 275.42 -3.84 -72.71 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.12 Total: 19.73 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 3.37 Total: -50.83 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -3.89 Total: -65.95 kcal Atomic # 8 Polarization: -120.90 SS G_CDS: -6.21 Total: -127.11 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 109.05 SS G_CDS: -0.26 Total: 108.80 kcal Total: -68.87 -3.84 -72.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.993 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds