Wall clock time and date at job start Mon Mar 30 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99871 * 2 1 4 4 H 1.48510 * 109.47195 * 269.99506 * 3 2 1 5 5 H 1.48503 * 109.47602 * 29.99846 * 3 2 1 6 6 H 1.48500 * 109.47092 * 149.99945 * 3 2 1 7 7 C 1.37875 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00090 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.60217 * 59.67437 * 9 7 2 11 11 C 1.53181 * 109.60316 * 179.97438 * 9 7 2 12 12 N 1.46466 * 109.90183 * 182.55648 * 11 9 7 13 13 C 1.46903 * 111.00172 * 163.00345 * 12 11 9 14 14 C 1.54039 * 113.81539 * 280.40637 * 13 12 11 15 15 O 1.44441 * 85.42362 * 223.23526 * 14 13 12 16 16 C 1.44181 * 93.38192 * 24.08979 * 15 14 13 17 17 C 1.46474 * 112.46361 * 288.03575 * 12 11 9 18 18 C 1.53179 * 109.82776 * 72.00740 * 17 12 11 19 19 S 1.81811 * 109.73754 * 299.26710 * 9 7 2 20 20 O 1.42095 * 108.70471 * 302.10519 * 19 9 7 21 21 O 1.42107 * 108.70197 * 73.45137 * 19 9 7 22 22 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.39860 * 62.42467 * 11 9 7 24 24 H 1.08999 * 109.32806 * 302.64196 * 11 9 7 25 25 H 1.08997 * 113.00055 * 52.22838 * 13 12 11 26 26 H 1.08999 * 113.86427 * 337.34352 * 14 13 12 27 27 H 1.08997 * 113.86296 * 109.04353 * 14 13 12 28 28 H 1.09002 * 113.86140 * 221.76515 * 16 15 14 29 29 H 1.08999 * 113.98056 * 90.07312 * 16 15 14 30 30 H 1.09002 * 109.40186 * 192.09556 * 17 12 11 31 31 H 1.09003 * 109.40240 * 311.92137 * 17 12 11 32 32 H 1.09001 * 109.60386 * 57.07717 * 18 17 12 33 33 H 1.09002 * 109.60632 * 177.56718 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6195 -2.5568 -0.8861 11 6 2.2437 -3.6658 0.0005 12 7 1.5190 -4.9371 -0.0609 13 6 2.4110 -6.0326 -0.4636 14 6 2.6761 -6.0936 -1.9797 15 8 2.4931 -7.5192 -1.8374 16 6 1.6939 -7.3838 -0.6450 17 6 0.8344 -5.2523 1.1951 18 6 -0.3733 -4.3274 1.3749 19 16 0.2189 -2.6122 1.4930 20 8 1.0556 -2.4955 2.6356 21 8 -0.8887 -1.7337 1.3487 22 1 -0.4850 0.8400 -0.0004 23 1 2.8408 -3.6330 0.9119 24 1 2.9000 -3.5810 -0.8656 25 1 3.3141 -6.0917 0.1439 26 1 1.9078 -5.6082 -2.5816 27 1 3.6880 -5.8035 -2.2624 28 1 1.9286 -8.1150 0.1286 29 1 0.6246 -7.2934 -0.8363 30 1 0.4968 -6.2885 1.1733 31 1 1.5238 -5.1136 2.0279 32 1 -1.0406 -4.4265 0.5187 33 1 -0.9049 -4.5934 2.2886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:34 Heat of formation + Delta-G solvation = -64.244261 kcal Electronic energy + Delta-G solvation = -18881.547429 eV Core-core repulsion = 15843.603202 eV Total energy + Delta-G solvation = -3037.944228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39047 -37.10281 -35.09031 -34.20453 -33.69960 -30.89882 -30.45365 -27.25313 -26.60945 -24.85065 -22.43719 -21.04134 -19.94575 -17.72784 -16.89258 -16.35796 -16.29125 -15.75974 -15.16674 -15.00799 -14.84367 -14.30441 -14.01004 -13.45672 -13.25690 -12.68688 -12.51713 -12.12848 -11.79654 -11.50477 -11.43534 -11.21999 -11.13089 -10.73712 -10.68666 -10.26589 -10.24747 -10.17086 -9.91873 -9.67411 -9.36377 -8.94258 -8.48553 -8.16648 -6.46647 -4.51253 1.67620 3.14747 3.20532 3.24535 3.72703 3.92973 4.10876 4.25577 4.41444 4.89069 5.02765 5.11614 5.17375 5.34468 5.43409 5.46888 5.50746 5.65864 5.69686 5.80616 5.88152 5.96344 6.06322 6.11525 6.25910 6.40768 6.52589 6.89600 7.17302 7.28228 7.40024 7.61771 8.32338 8.92274 10.45727 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.027022 B = 0.007705 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.963144 B = 3633.118451 C = 4308.423283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.033 3.967 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.084 0.916 9 C -0.338 4.338 10 H 0.104 0.896 11 C 0.070 3.930 12 N -0.546 5.546 13 C 0.014 3.986 14 C 0.049 3.951 15 O -0.386 6.386 16 C 0.043 3.957 17 C 0.079 3.921 18 C -0.643 4.643 19 S 2.296 3.704 20 O -0.991 6.991 21 O -0.926 6.926 22 H 0.284 0.716 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.119 0.881 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -9.320 -2.250 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.181 4.181 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.507 4.507 8 H 0.102 0.898 9 C -0.449 4.449 10 H 0.122 0.878 11 C -0.058 4.058 12 N -0.273 5.273 13 C -0.095 4.095 14 C -0.028 4.028 15 O -0.305 6.305 16 C -0.034 4.034 17 C -0.049 4.049 18 C -0.762 4.762 19 S 2.484 3.516 20 O -0.987 6.987 21 O -0.921 6.921 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.138 0.862 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.311 -9.004 -1.944 9.497 hybrid contribution 0.722 0.229 0.466 0.889 sum 3.033 -8.775 -1.478 9.401 Atomic orbital electron populations 1.70156 1.05269 1.29425 1.37077 1.25561 0.95726 1.01246 0.95615 0.86188 0.80026 0.81230 0.78748 1.19680 1.20268 1.18902 1.20930 0.94386 0.87532 1.47854 0.89753 1.27150 1.06743 0.97912 1.13046 0.87796 1.21994 0.95645 0.86004 1.02134 1.61670 1.30722 1.02751 1.32143 1.24998 0.95868 0.91266 0.97339 1.24132 1.02477 0.81067 0.95152 1.89690 1.70352 1.23990 1.46423 1.24070 0.96734 0.95144 0.87467 1.21493 0.94043 0.99191 0.90208 1.30648 1.06771 1.30608 1.08176 1.16077 0.78192 0.75650 0.81651 1.93296 1.68399 1.85398 1.51611 1.93459 1.54231 1.57660 1.86702 0.90568 0.93457 0.89577 0.90405 0.88745 0.89187 0.89505 0.89222 0.90680 0.93544 0.86234 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.43 10.09 55.43 0.56 -20.87 16 2 C 0.03 0.84 5.29 -17.82 -0.09 0.74 16 3 Si 0.91 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -11.28 8.54 -34.44 -0.29 -11.58 16 8 H 0.08 1.96 7.75 -52.49 -0.41 1.55 16 9 C -0.34 -7.61 2.56 -27.79 -0.07 -7.68 16 10 H 0.10 2.37 8.14 -51.93 -0.42 1.95 16 11 C 0.07 1.29 4.60 -3.97 -0.02 1.27 16 12 N -0.55 -8.78 4.38 -235.06 -1.03 -9.80 16 13 C 0.01 0.19 3.39 -66.63 -0.23 -0.04 16 14 C 0.05 0.61 8.64 37.64 0.33 0.94 16 15 O -0.39 -5.34 12.46 -35.23 -0.44 -5.78 16 16 C 0.04 0.51 7.56 37.64 0.28 0.80 16 17 C 0.08 1.28 5.32 -3.96 -0.02 1.26 16 18 C -0.64 -11.89 6.57 37.25 0.24 -11.64 16 19 S 2.30 55.33 4.45 -107.50 -0.48 54.85 16 20 O -0.99 -26.54 18.06 -57.81 -1.04 -27.59 16 21 O -0.93 -25.77 15.09 -57.81 -0.87 -26.64 16 22 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.05 0.90 7.93 -51.93 -0.41 0.48 16 24 H 0.09 1.43 7.67 -51.93 -0.40 1.03 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.05 8.02 -51.93 -0.42 0.64 16 30 H 0.07 1.00 6.67 -51.93 -0.35 0.65 16 31 H 0.05 0.78 7.93 -51.93 -0.41 0.36 16 32 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 33 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -31.43 279.11 -8.47 -39.90 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.49 Total: 3.01 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 0.13 Total: -25.93 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: -0.47 Total: -30.68 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -2.36 Total: -60.01 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 55.33 SS G_CDS: -0.48 Total: 54.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.43 -8.47 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.344 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds