Wall clock time and date at job start Mon Mar 30 2020 04:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48503 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47247 * 299.99810 * 3 2 1 6 6 H 1.48497 * 109.47324 * 59.99932 * 3 2 1 7 7 C 1.39926 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00495 * 196.81146 * 7 2 1 9 9 C 1.41415 * 119.99835 * 16.81053 * 7 2 1 10 10 C 1.40776 * 120.21110 * 25.16809 * 9 7 2 11 11 C 1.37648 * 119.89919 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32636 * 359.73590 * 11 10 9 13 13 C 1.39292 * 120.42157 * 0.52386 * 12 11 10 14 14 N 1.39770 * 119.95141 * 179.75793 * 13 12 11 15 15 C 1.34771 * 120.00059 * 325.50519 * 14 13 12 16 16 O 1.21550 * 120.00276 * 354.89187 * 15 14 13 17 17 C 1.47622 * 120.00011 * 174.89689 * 15 14 13 18 18 C 1.34298 * 119.99536 * 179.97438 * 17 15 14 19 19 C 1.47492 * 119.99554 * 179.97438 * 18 17 15 20 20 O 1.21456 * 119.99850 * 0.02562 * 19 18 17 21 21 O 1.34760 * 119.99794 * 179.72249 * 19 18 17 22 22 C 1.38338 * 120.09443 * 359.48163 * 13 12 11 23 23 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.05184 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.83928 * 180.02562 * 11 10 9 26 26 H 1.07997 * 119.78678 * 180.27939 * 12 11 10 27 27 H 0.97000 * 119.99840 * 145.50071 * 14 13 12 28 28 H 1.07990 * 119.99705 * 359.97438 * 17 15 14 29 29 H 1.07998 * 120.00817 * 0.02562 * 18 17 15 30 30 H 0.96705 * 116.99787 * 180.27472 * 21 19 18 31 31 H 1.08006 * 120.15802 * 180.23865 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0533 -1.2317 0.2710 9 6 1.3462 -2.4105 -0.3531 10 6 0.2111 -2.3740 -1.1850 11 6 -0.4284 -3.5446 -1.5248 12 6 0.0425 -4.7603 -1.0565 13 6 1.1612 -4.8115 -0.2283 14 7 1.6250 -6.0431 0.2427 15 6 0.7505 -7.0284 0.5269 16 8 -0.4448 -6.8174 0.4629 17 6 1.2445 -8.3641 0.9160 18 6 0.3730 -9.3457 1.1997 19 6 0.8665 -10.6803 1.5879 20 8 2.0609 -10.8913 1.6515 21 8 -0.0079 -11.6639 1.8780 22 6 1.8173 -3.6458 0.1242 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1579 -1.4290 -1.5555 25 1 -1.2989 -3.5156 -2.1634 26 1 -0.4633 -5.6737 -1.3323 27 1 2.5762 -6.1886 0.3649 28 1 2.3065 -8.5516 0.9725 29 1 -0.6890 -9.1583 1.1427 30 1 0.3629 -12.5203 2.1313 31 1 2.6872 -3.6847 0.7633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313410491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:23 Heat of formation + Delta-G solvation = -87.868169 kcal Electronic energy + Delta-G solvation = -17825.963762 eV Core-core repulsion = 14651.551173 eV Total energy + Delta-G solvation = -3174.412588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48436 -39.79060 -37.34174 -36.45569 -34.59975 -33.37750 -33.01896 -29.88696 -28.57140 -25.78901 -25.25319 -22.34966 -21.08099 -20.40065 -19.37582 -18.66309 -17.72733 -17.40883 -16.23928 -15.89291 -15.61164 -15.12856 -14.97803 -14.34749 -14.12471 -13.85639 -13.11607 -12.91818 -12.44719 -12.29936 -11.93660 -11.73679 -11.28315 -11.18924 -11.04473 -10.96862 -10.57861 -10.28631 -10.15441 -9.71571 -9.60040 -9.27143 -9.03243 -7.52054 -7.01015 -6.76543 -4.40414 0.36641 2.33838 2.57117 2.75624 2.81957 3.06430 3.11345 3.17474 3.48445 3.60721 3.91851 4.60617 4.69855 4.82617 5.00032 5.60152 5.63761 5.87744 6.11136 6.23763 6.45881 6.63295 6.87348 6.93005 6.99469 7.20538 7.51013 7.53713 7.58180 7.88192 7.98406 8.05872 8.23124 8.43226 8.60982 8.85161 8.91338 10.17203 Molecular weight = 261.08amu Principal moments of inertia in cm(-1) A = 0.050484 B = 0.003451 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.495588 B = 8112.748799 C = 8441.850156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.164 4.164 11 C -0.095 4.095 12 C -0.225 4.225 13 C 0.147 3.853 14 N -0.652 5.652 15 C 0.529 3.471 16 O -0.510 6.510 17 C -0.093 4.093 18 C -0.121 4.121 19 C 0.515 3.485 20 O -0.513 6.513 21 O -0.508 6.508 22 C -0.241 4.241 23 H 0.280 0.720 24 H 0.120 0.880 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.404 0.596 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.414 0.586 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -13.413 1.554 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.184 4.184 11 C -0.114 4.114 12 C -0.246 4.246 13 C 0.056 3.944 14 N -0.295 5.295 15 C 0.316 3.684 16 O -0.386 6.386 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.360 3.640 20 O -0.403 6.403 21 O -0.320 6.320 22 C -0.263 4.263 23 H 0.091 0.909 24 H 0.138 0.862 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.239 0.761 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.273 0.727 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.371 -12.801 1.425 12.952 hybrid contribution 1.063 0.085 0.373 1.130 sum 2.434 -12.716 1.797 13.071 Atomic orbital electron populations 1.69837 1.07560 1.29149 1.35294 1.25900 0.94733 1.01320 0.92247 0.86260 0.80923 0.80965 0.78556 1.18427 1.19700 1.20028 1.19552 0.97742 0.90956 1.41093 0.90371 1.17380 0.91046 0.91346 0.88384 1.21408 0.99055 0.96939 1.01000 1.20587 0.98469 0.92744 0.99634 1.20300 1.00874 0.97381 1.06061 1.17412 0.97386 0.82663 0.96966 1.43318 1.09832 1.12602 1.63730 1.18392 0.86658 0.84499 0.78891 1.90839 1.15278 1.82059 1.50464 1.23571 1.01466 0.92595 0.93812 1.22408 1.02773 0.88791 1.00186 1.21233 0.83729 0.85651 0.73405 1.90907 1.17438 1.82936 1.48999 1.84620 1.42737 1.24411 1.80182 1.20724 1.05537 0.91354 1.08643 0.90876 0.86214 0.88901 0.88116 0.76116 0.83719 0.82527 0.72687 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.36 10.94 55.55 0.61 -19.75 16 2 C 0.08 1.87 5.16 -17.35 -0.09 1.78 16 3 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.02 9.05 -37.74 -0.34 -12.36 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 9 C 0.12 3.17 5.57 -106.85 -0.59 2.58 16 10 C -0.16 -4.25 8.69 -38.84 -0.34 -4.58 16 11 C -0.10 -2.28 10.01 -39.69 -0.40 -2.68 16 12 C -0.23 -5.24 8.66 -39.09 -0.34 -5.58 16 13 C 0.15 3.24 6.24 -83.81 -0.52 2.72 16 14 N -0.65 -11.10 5.32 -10.84 -0.06 -11.15 16 15 C 0.53 8.74 7.51 -12.43 -0.09 8.65 16 16 O -0.51 -10.41 13.99 5.32 0.07 -10.33 16 17 C -0.09 -1.12 9.60 -37.14 -0.36 -1.48 16 18 C -0.12 -1.36 9.72 -37.20 -0.36 -1.73 16 19 C 0.52 5.42 8.30 34.50 0.29 5.71 16 20 O -0.51 -6.59 17.03 -19.23 -0.33 -6.92 16 21 O -0.51 -3.97 13.44 -40.66 -0.55 -4.52 16 22 C -0.24 -5.69 9.70 -38.67 -0.38 -6.07 16 23 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 24 H 0.12 3.17 6.17 -52.48 -0.32 2.85 16 25 H 0.09 2.00 8.06 -52.49 -0.42 1.57 16 26 H 0.10 2.29 6.47 -52.49 -0.34 1.95 16 27 H 0.40 5.30 8.80 -40.82 -0.36 4.94 16 28 H 0.15 1.43 7.52 -52.49 -0.39 1.04 16 29 H 0.16 1.78 7.53 -52.49 -0.40 1.38 16 30 H 0.41 1.26 9.11 45.56 0.42 1.68 16 31 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -31.89 287.77 -6.26 -38.15 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -1.79 Total: 9.92 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.52 Total: -13.03 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.55 Total: -30.90 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.80 Total: -21.77 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.89 -6.26 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.715 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds