Wall clock time and date at job start Mon Mar 30 2020 04:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48503 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47247 * 299.99810 * 3 2 1 6 6 H 1.48497 * 109.47324 * 59.99932 * 3 2 1 7 7 C 1.39926 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00495 * 196.81146 * 7 2 1 9 9 C 1.41415 * 119.99835 * 16.81053 * 7 2 1 10 10 C 1.40776 * 120.21110 * 25.16809 * 9 7 2 11 11 C 1.37648 * 119.89919 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32636 * 359.73590 * 11 10 9 13 13 C 1.39292 * 120.42157 * 0.52386 * 12 11 10 14 14 N 1.39770 * 119.95141 * 179.75793 * 13 12 11 15 15 C 1.34771 * 120.00059 * 325.50519 * 14 13 12 16 16 O 1.21550 * 120.00276 * 354.89187 * 15 14 13 17 17 C 1.47622 * 120.00011 * 174.89689 * 15 14 13 18 18 C 1.34298 * 119.99536 * 179.97438 * 17 15 14 19 19 C 1.47492 * 119.99554 * 179.97438 * 18 17 15 20 20 O 1.21456 * 119.99850 * 0.02562 * 19 18 17 21 21 O 1.34760 * 119.99794 * 179.72249 * 19 18 17 22 22 C 1.38338 * 120.09443 * 359.48163 * 13 12 11 23 23 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.05184 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.83928 * 180.02562 * 11 10 9 26 26 H 1.07997 * 119.78678 * 180.27939 * 12 11 10 27 27 H 0.97000 * 119.99840 * 145.50071 * 14 13 12 28 28 H 1.07990 * 119.99705 * 359.97438 * 17 15 14 29 29 H 1.07998 * 120.00817 * 0.02562 * 18 17 15 30 30 H 0.96705 * 116.99787 * 180.27472 * 21 19 18 31 31 H 1.08006 * 120.15802 * 180.23865 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0533 -1.2317 0.2710 9 6 1.3462 -2.4105 -0.3531 10 6 0.2111 -2.3740 -1.1850 11 6 -0.4284 -3.5446 -1.5248 12 6 0.0425 -4.7603 -1.0565 13 6 1.1612 -4.8115 -0.2283 14 7 1.6250 -6.0431 0.2427 15 6 0.7505 -7.0284 0.5269 16 8 -0.4448 -6.8174 0.4629 17 6 1.2445 -8.3641 0.9160 18 6 0.3730 -9.3457 1.1997 19 6 0.8665 -10.6803 1.5879 20 8 2.0609 -10.8913 1.6515 21 8 -0.0079 -11.6639 1.8780 22 6 1.8173 -3.6458 0.1242 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1579 -1.4290 -1.5555 25 1 -1.2989 -3.5156 -2.1634 26 1 -0.4633 -5.6737 -1.3323 27 1 2.5762 -6.1886 0.3649 28 1 2.3065 -8.5516 0.9725 29 1 -0.6890 -9.1583 1.1427 30 1 0.3629 -12.5203 2.1313 31 1 2.6872 -3.6847 0.7633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313410491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:23 Heat of formation + Delta-G solvation = -109.542630 kcal Electronic energy + Delta-G solvation = -17826.903637 eV Core-core repulsion = 14651.551173 eV Total energy + Delta-G solvation = -3175.352464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51798 -41.03972 -39.07782 -37.22073 -36.25577 -34.93744 -34.26190 -31.77935 -30.25161 -27.24955 -26.80197 -23.67500 -22.86366 -21.91985 -20.57322 -19.58801 -19.41122 -18.41701 -17.59204 -17.20718 -16.76693 -16.74127 -16.56092 -15.97542 -15.52745 -14.94042 -14.68159 -14.56616 -14.09647 -13.54951 -13.38877 -13.01267 -12.90755 -12.74296 -12.67262 -12.30301 -11.94526 -11.92063 -11.47952 -11.24539 -11.15017 -11.07024 -10.75627 -9.42591 -8.80252 -8.60691 -6.35842 -0.61553 0.90139 0.96715 1.41249 1.47992 1.55946 1.58266 1.67967 2.18756 2.22479 2.42419 2.75992 3.61630 3.72168 3.94655 4.15041 4.41826 4.64799 4.68290 4.95905 4.99794 5.02147 5.10112 5.21356 5.33397 5.48061 5.70938 5.81450 6.07478 6.10208 6.26105 6.54121 6.68445 6.88916 6.92818 6.95896 7.14360 8.34926 Molecular weight = 261.08amu Principal moments of inertia in cm(-1) A = 0.050484 B = 0.003451 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.495588 B = 8112.748799 C = 8441.850156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.094 3.906 10 C -0.193 4.193 11 C -0.098 4.098 12 C -0.236 4.236 13 C 0.158 3.842 14 N -0.645 5.645 15 C 0.532 3.468 16 O -0.553 6.553 17 C -0.092 4.092 18 C -0.105 4.105 19 C 0.527 3.473 20 O -0.535 6.535 21 O -0.501 6.501 22 C -0.251 4.251 23 H 0.288 0.712 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.424 0.576 28 H 0.172 0.828 29 H 0.156 0.844 30 H 0.437 0.563 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -14.634 2.167 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.213 4.213 11 C -0.117 4.117 12 C -0.258 4.258 13 C 0.065 3.935 14 N -0.290 5.290 15 C 0.321 3.679 16 O -0.431 6.431 17 C -0.114 4.114 18 C -0.126 4.126 19 C 0.372 3.628 20 O -0.427 6.427 21 O -0.315 6.315 22 C -0.273 4.273 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.263 0.737 28 H 0.189 0.811 29 H 0.173 0.827 30 H 0.300 0.700 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.367 -14.088 2.051 14.432 hybrid contribution 0.662 0.261 0.221 0.746 sum 3.029 -13.827 2.273 14.336 Atomic orbital electron populations 1.69901 1.09132 1.30539 1.35693 1.26797 0.95468 1.04683 0.91176 0.85120 0.79504 0.76052 0.78782 1.17845 1.19025 1.19311 1.19846 0.98128 0.91977 1.42509 0.90044 1.17760 0.91583 0.92680 0.88881 1.21343 1.00289 0.96934 1.02707 1.20815 0.98781 0.92561 0.99523 1.20471 1.01544 0.97211 1.06528 1.17420 0.96300 0.84249 0.95523 1.43217 1.11229 1.11101 1.63464 1.19010 0.85894 0.85579 0.77382 1.90821 1.17158 1.82963 1.52196 1.23295 1.02800 0.90056 0.95211 1.22507 1.02659 0.89236 0.98205 1.20904 0.83358 0.85657 0.72889 1.90913 1.18364 1.83332 1.50063 1.84573 1.42165 1.25304 1.79462 1.20903 1.06251 0.91195 1.08920 0.90143 0.87790 0.87178 0.87606 0.73705 0.81059 0.82683 0.70029 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.38 10.94 21.82 0.24 -43.14 16 2 C 0.03 1.67 5.16 85.25 0.44 2.11 16 3 Si 0.98 37.59 29.59 68.60 2.03 39.62 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 6 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.50 -26.16 9.05 23.46 0.21 -25.94 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C 0.09 5.03 5.57 -21.31 -0.12 4.91 16 10 C -0.19 -10.31 8.69 22.75 0.20 -10.11 16 11 C -0.10 -4.77 10.01 22.20 0.22 -4.55 16 12 C -0.24 -11.04 8.66 22.59 0.20 -10.84 16 13 C 0.16 6.91 6.24 38.15 0.24 7.15 16 14 N -0.65 -21.05 5.32 -306.49 -1.63 -22.68 16 15 C 0.53 16.84 7.51 86.72 0.65 17.49 16 16 O -0.55 -22.21 13.99 -3.87 -0.05 -22.27 16 17 C -0.09 -2.01 9.60 23.85 0.23 -1.78 16 18 C -0.11 -2.13 9.72 23.81 0.23 -1.90 16 19 C 0.53 9.59 8.30 70.26 0.58 10.17 16 20 O -0.53 -12.26 17.03 19.98 0.34 -11.92 16 21 O -0.50 -6.27 13.44 -56.71 -0.76 -7.03 16 22 C -0.25 -11.91 9.70 22.86 0.22 -11.68 16 23 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 24 H 0.10 5.78 6.17 -2.91 -0.02 5.76 16 25 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 26 H 0.11 4.80 6.47 -2.91 -0.02 4.78 16 27 H 0.42 10.23 8.80 -92.71 -0.82 9.41 16 28 H 0.17 2.83 7.52 -2.92 -0.02 2.81 16 29 H 0.16 3.23 7.53 -2.91 -0.02 3.21 16 30 H 0.44 1.19 9.11 -74.05 -0.67 0.52 16 31 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -69.54 287.77 3.18 -66.37 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.29 Total: 26.04 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 3.30 Total: -24.98 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.39 Total: -65.82 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.48 Total: -41.22 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -69.54 3.18 -66.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.173 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds