Wall clock time and date at job start Mon Mar 30 2020 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47443 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47056 * 299.99777 * 3 2 1 6 6 H 1.48501 * 109.47385 * 59.99435 * 3 2 1 7 7 C 1.38803 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99516 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99855 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47254 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00211 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00061 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.65119 * 359.97438 * 13 11 10 15 15 C 1.54909 * 104.83564 * 155.90415 * 14 13 11 16 16 C 1.55152 * 101.58032 * 37.00513 * 15 14 13 17 17 O 1.42903 * 110.72100 * 82.86680 * 16 15 14 18 18 C 1.52997 * 110.71962 * 205.95584 * 16 15 14 19 19 O 1.42900 * 109.47479 * 177.56133 * 18 16 15 20 20 C 1.47027 * 125.65015 * 180.02562 * 13 11 10 21 21 H 0.97007 * 120.00089 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47566 * 60.00084 * 10 9 7 23 23 H 1.09002 * 109.47571 * 300.00471 * 10 9 7 24 24 H 1.09002 * 110.36847 * 37.05670 * 14 13 11 25 25 H 1.09001 * 110.36336 * 274.74112 * 14 13 11 26 26 H 1.09005 * 111.00113 * 278.93173 * 15 14 13 27 27 H 1.08997 * 111.00248 * 155.08112 * 15 14 13 28 28 H 0.96700 * 114.00311 * 179.97438 * 17 16 15 29 29 H 1.08997 * 109.47591 * 297.56362 * 18 16 15 30 30 H 1.08997 * 109.47100 * 57.56533 * 18 16 15 31 31 H 0.96703 * 114.00622 * 180.02562 * 19 18 16 32 32 H 1.09003 * 109.87825 * 61.60851 * 20 13 11 33 33 H 1.09001 * 109.88209 * 300.44906 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8440 -6.3431 -0.0007 14 6 4.3150 -6.2449 -0.0014 15 6 4.8021 -7.5825 0.6094 16 6 3.7728 -8.5852 0.0244 17 8 4.1473 -8.9813 -1.2966 18 6 3.6305 -9.8073 0.9338 19 8 2.6368 -10.6849 0.4005 20 6 2.4665 -7.7640 -0.0019 21 1 -0.4850 0.8401 -0.0004 22 1 3.1244 -3.7314 0.8905 23 1 3.1244 -3.7314 -0.8894 24 1 4.6395 -5.4060 0.6144 25 1 4.6873 -6.1351 -1.0200 26 1 4.7481 -7.5575 1.6979 27 1 5.8121 -7.8197 0.2752 28 1 3.5364 -9.6084 -1.7073 29 1 4.5848 -10.3309 0.9908 30 1 3.3328 -9.4850 1.9315 31 1 2.4930 -11.4829 0.9274 32 1 1.9005 -7.9964 -0.9040 33 1 1.8691 -7.9896 0.8814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313671924.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:18 Heat of formation + Delta-G solvation = -130.863007 kcal Electronic energy + Delta-G solvation = -17472.162389 eV Core-core repulsion = 14431.329356 eV Total energy + Delta-G solvation = -3040.833033 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23421 -38.32389 -36.53143 -35.25220 -32.41818 -31.52031 -29.71922 -28.83523 -25.82959 -25.32287 -23.14634 -20.73199 -19.44652 -17.86481 -17.67021 -17.36898 -16.58518 -15.73860 -15.40755 -14.90710 -14.79230 -14.52103 -14.10548 -13.86438 -13.64378 -13.15741 -12.64925 -12.55118 -12.29343 -12.08708 -11.73638 -11.62967 -11.16745 -11.05992 -11.00000 -10.75812 -10.51741 -10.30363 -9.78816 -9.37675 -9.06225 -8.48772 -8.21266 -6.48895 -6.20492 -3.91035 2.90934 3.08728 3.22566 3.27114 3.32263 3.59405 3.66187 3.76107 4.21122 4.26465 4.31482 4.70563 4.86619 4.98168 5.02483 5.14724 5.16982 5.30569 5.45369 5.51093 5.59194 5.69836 5.82037 5.84402 5.95235 6.15500 6.41553 7.11778 7.39211 7.61028 7.68308 8.36711 8.57821 9.24817 10.87037 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.049230 B = 0.004009 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.619894 B = 6982.590989 C = 7343.536238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.516 6.516 13 N -0.625 5.625 14 C 0.104 3.896 15 C -0.119 4.119 16 C 0.124 3.876 17 O -0.547 6.547 18 C 0.058 3.942 19 O -0.572 6.572 20 C 0.094 3.906 21 H 0.268 0.732 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.386 0.614 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.385 0.615 32 H 0.073 0.927 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -19.500 2.514 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.390 6.390 13 N -0.363 5.363 14 C -0.019 4.019 15 C -0.157 4.157 16 C 0.082 3.918 17 O -0.354 6.354 18 C -0.020 4.020 19 O -0.378 6.378 20 C -0.029 4.029 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.108 0.892 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.235 0.765 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.091 0.909 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.903 -18.738 2.170 21.305 hybrid contribution 1.564 0.424 0.354 1.658 sum 11.467 -18.314 2.524 21.755 Atomic orbital electron populations 1.70032 1.05963 1.27334 1.46955 1.24996 0.95026 0.99032 0.94540 0.86108 0.79585 0.81853 0.77893 1.19604 1.20556 1.20574 1.22906 0.94945 0.91585 1.58830 0.90859 1.85409 1.05003 0.96357 1.96705 1.23506 1.06454 0.94869 1.04831 1.20051 0.85668 0.85440 0.75216 1.90707 1.14968 1.85144 1.48160 1.48474 1.06678 1.05384 1.75784 1.22274 0.80422 0.97642 1.01548 1.22811 0.99077 0.93120 1.00677 1.22166 0.94140 0.91876 0.83649 1.86468 1.53858 1.66811 1.28231 1.22801 0.91659 0.91017 0.96559 1.86409 1.60206 1.36455 1.54779 1.22445 0.96349 0.81130 1.03012 0.92241 0.89269 0.89224 0.89918 0.90764 0.88986 0.88583 0.76494 0.92269 0.92203 0.76713 0.90911 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.10 5.16 36.00 0.19 -2.91 16 11 C 0.55 11.16 7.87 -10.99 -0.09 11.08 16 12 O -0.52 -12.54 16.19 5.56 0.09 -12.45 16 13 N -0.63 -9.76 3.33 -170.53 -0.57 -10.33 16 14 C 0.10 1.22 6.68 -2.53 -0.02 1.20 16 15 C -0.12 -1.04 6.26 -24.59 -0.15 -1.19 16 16 C 0.12 1.22 1.05 -88.79 -0.09 1.12 16 17 O -0.55 -5.76 13.10 -43.50 -0.57 -6.33 16 18 C 0.06 0.42 6.09 37.16 0.23 0.65 16 19 O -0.57 -4.24 12.94 -43.50 -0.56 -4.81 16 20 C 0.09 1.27 6.04 -3.07 -0.02 1.25 16 21 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 23 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 24 H 0.08 0.89 7.48 -51.93 -0.39 0.51 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 0.66 8.05 -51.93 -0.42 0.25 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.39 3.25 8.59 45.56 0.39 3.65 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.39 1.15 9.12 45.56 0.42 1.57 16 32 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 33 H 0.07 1.01 7.81 -51.93 -0.41 0.60 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -36.68 298.14 -6.27 -42.95 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.89 Total: 1.46 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 0.24 Total: -1.92 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.17 Total: -36.00 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.04 Total: -23.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.68 -6.27 -42.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313671924.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.916 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds