Wall clock time and date at job start Mon Mar 30 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37990 * 119.77764 * 2 1 4 4 C 1.43205 * 120.26003 * 359.97438 * 3 2 1 5 5 N 3.47418 * 80.10143 * 359.97438 * 2 1 3 6 6 C 1.41582 * 119.48362 * 180.27437 * 3 2 1 7 7 C 1.36011 * 119.02122 * 359.44152 * 6 3 2 8 8 C 1.40721 * 119.50898 * 0.51583 * 7 6 3 9 9 O 1.21991 * 119.74241 * 179.75749 * 8 7 6 10 10 N 1.34538 * 120.50985 * 359.77372 * 8 7 6 11 11 C 1.46498 * 119.48733 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46962 * 269.98147 * 11 10 8 13 13 O 1.21284 * 120.00501 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99705 * 179.97438 * 12 11 10 15 15 C 1.37100 * 120.00090 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99714 * 0.02562 * 15 14 12 17 17 C 1.38944 * 119.99989 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99934 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47149 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47462 * 119.99903 * 19 17 15 22 22 H 1.48500 * 109.47194 * 240.00112 * 19 17 15 23 23 H 1.09003 * 109.47282 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46955 * 119.99933 * 1 2 3 25 25 H 1.08996 * 109.47664 * 240.00121 * 1 2 3 26 26 H 1.08007 * 120.49285 * 179.70085 * 6 3 2 27 27 H 1.07998 * 120.24134 * 180.24627 * 7 6 3 28 28 H 1.09003 * 109.46862 * 29.97940 * 11 10 8 29 29 H 1.08996 * 109.47405 * 149.97779 * 11 10 8 30 30 H 0.97005 * 119.99740 * 0.02562 * 14 12 11 31 31 H 0.97005 * 119.99686 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1977 0.0000 4 6 1.4771 2.4384 -0.0006 5 7 0.9098 3.4225 -0.0015 6 6 3.6081 1.1904 -0.0059 7 6 4.2618 -0.0022 0.0001 8 6 3.5211 -1.1987 0.0010 9 8 4.1031 -2.2708 0.0020 10 7 2.1760 -1.1693 0.0006 11 6 1.4273 -2.4285 0.0010 12 6 1.1706 -2.8607 -1.4197 13 8 1.5731 -2.1834 -2.3419 14 7 0.4938 -4.0000 -1.6656 15 6 0.2598 -4.3930 -2.9581 16 1 0.6182 -3.7899 -3.7791 17 6 -0.4384 -5.5672 -3.2116 18 7 -0.8750 -6.3008 -2.2125 19 14 -0.7566 -6.1031 -4.9725 20 1 -0.1668 -5.1104 -5.9063 21 1 -0.1362 -7.4320 -5.2054 22 1 -2.2204 -6.1925 -5.2059 23 1 -0.3634 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3634 -0.5138 0.8899 26 1 4.1609 2.1183 -0.0109 27 1 5.3414 -0.0307 -0.0002 28 1 2.0065 -3.1955 0.5151 29 1 0.4766 -2.2858 0.5147 30 1 0.1715 -4.5415 -0.9281 31 1 -1.3621 -7.1208 -2.3895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378953296.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:21 Heat of formation + Delta-G solvation = -6.994997 kcal Electronic energy + Delta-G solvation = -18867.504816 eV Core-core repulsion = 15728.891902 eV Total energy + Delta-G solvation = -3138.612913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.65712 -38.26635 -37.65222 -36.25034 -34.65300 -34.00084 -31.85485 -31.46796 -28.52100 -27.95770 -24.95961 -23.52601 -22.53787 -20.09180 -19.05836 -18.10374 -17.64630 -16.84827 -16.40510 -15.48784 -15.21645 -14.52734 -14.23316 -14.09582 -13.85840 -13.80869 -13.67231 -13.54219 -13.29711 -12.71104 -12.67752 -12.26022 -11.93159 -11.70602 -11.62456 -11.26104 -11.16796 -10.45822 -10.40638 -10.32152 -9.91497 -9.71027 -8.71571 -8.17802 -7.88789 -6.58851 -4.00599 0.72428 1.33592 2.37626 2.74869 3.05341 3.12070 3.19568 3.26419 3.58829 3.76546 3.92186 4.03787 4.16701 4.56415 4.69982 4.77124 4.96829 5.11544 5.17633 5.27046 5.37862 5.52950 5.66766 5.82375 5.87899 6.00649 6.08863 6.33465 7.01766 7.40194 7.51280 7.83306 8.04665 8.36587 8.98034 9.28734 9.77077 10.57865 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.005161 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.895149 B = 5424.054423 C = 5876.644213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.262 3.738 3 C -0.169 4.169 4 C 0.282 3.718 5 N -0.437 5.437 6 C 0.016 3.984 7 C -0.242 4.242 8 C 0.525 3.475 9 O -0.529 6.529 10 N -0.456 5.456 11 C 0.067 3.933 12 C 0.422 3.578 13 O -0.583 6.583 14 N -0.547 5.547 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.028 3.972 18 N -0.894 5.894 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.280 1.280 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.395 0.605 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 9.366 8.095 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.143 3.857 3 C -0.179 4.179 4 C -0.032 4.032 5 N -0.115 5.115 6 C -0.007 4.007 7 C -0.264 4.264 8 C 0.327 3.673 9 O -0.409 6.409 10 N -0.162 5.162 11 C -0.058 4.058 12 C 0.206 3.794 13 O -0.468 6.468 14 N -0.182 5.182 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.175 4.175 18 N -0.534 5.534 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.206 1.206 23 H 0.108 0.892 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.159 0.841 27 H 0.173 0.827 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.228 0.772 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.235 10.346 7.470 12.955 hybrid contribution -0.134 -1.098 -0.478 1.205 sum 2.101 9.248 6.992 11.783 Atomic orbital electron populations 1.21368 0.87614 1.05579 1.05473 1.20690 0.95030 0.84711 0.85307 1.15010 0.92278 0.85571 1.25022 1.24941 0.93147 0.92364 0.92746 1.81266 1.08004 1.10686 1.11511 1.21166 0.91268 0.99029 0.89228 1.21878 1.01426 0.90512 1.12581 1.17217 0.80148 0.91673 0.78309 1.90965 1.67491 1.31726 1.50690 1.44844 1.08544 1.06352 1.56437 1.21965 0.98097 0.85784 0.99997 1.19662 0.85718 0.84888 0.89097 1.90588 1.55760 1.55624 1.44857 1.41776 1.47597 1.19523 1.09311 1.19773 1.33175 1.06350 0.83923 0.87628 1.25308 0.96419 0.95868 0.99950 1.69609 1.37259 1.15180 1.31400 0.85761 0.78081 0.78729 0.81584 1.19099 1.20516 1.20563 0.89221 0.87565 0.88419 0.84149 0.82686 0.85978 0.87025 0.77160 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.57 36.00 0.31 -1.20 16 2 C 0.26 3.37 6.70 -81.42 -0.55 2.82 16 3 C -0.17 -2.01 5.74 -106.79 -0.61 -2.63 16 4 C 0.28 3.47 13.48 -22.47 -0.30 3.17 16 5 N -0.44 -6.12 18.54 41.83 0.78 -5.34 16 6 C 0.02 0.17 9.83 -39.11 -0.38 -0.22 16 7 C -0.24 -3.13 9.97 -39.44 -0.39 -3.52 16 8 C 0.53 8.87 7.39 -15.43 -0.11 8.76 16 9 O -0.53 -10.92 16.59 4.93 0.08 -10.84 16 10 N -0.46 -7.01 2.04 -115.97 -0.24 -7.24 16 11 C 0.07 1.05 5.33 -5.19 -0.03 1.02 16 12 C 0.42 9.18 7.64 -10.98 -0.08 9.09 16 13 O -0.58 -14.95 16.01 5.55 0.09 -14.86 16 14 N -0.55 -12.83 5.29 -10.97 -0.06 -12.89 16 15 C -0.30 -8.00 9.68 -14.93 -0.14 -8.14 16 16 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 18 N -0.89 -22.98 13.05 55.50 0.72 -22.26 16 19 Si 0.93 20.17 29.55 -169.99 -5.02 15.14 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H 0.09 0.87 6.40 -51.93 -0.33 0.54 16 24 H 0.11 1.32 7.89 -51.93 -0.41 0.91 16 25 H 0.10 0.75 7.35 -51.93 -0.38 0.37 16 26 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 27 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.12 1.89 7.36 -51.93 -0.38 1.51 16 29 H 0.11 1.27 6.35 -51.93 -0.33 0.94 16 30 H 0.39 8.69 7.90 -40.82 -0.32 8.36 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -33.06 287.05 -4.23 -37.29 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -2.51 Total: 6.91 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -2.40 Total: 9.76 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 1.20 Total: -47.73 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.17 Total: -25.70 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.06 -4.23 -37.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378953296.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.294 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds