Wall clock time and date at job start Mon Mar 30 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37990 * 119.77764 * 2 1 4 4 C 1.43205 * 120.26003 * 359.97438 * 3 2 1 5 5 N 3.47418 * 80.10143 * 359.97438 * 2 1 3 6 6 C 1.41582 * 119.48362 * 180.27437 * 3 2 1 7 7 C 1.36011 * 119.02122 * 359.44152 * 6 3 2 8 8 C 1.40721 * 119.50898 * 0.51583 * 7 6 3 9 9 O 1.21991 * 119.74241 * 179.75749 * 8 7 6 10 10 N 1.34538 * 120.50985 * 359.77372 * 8 7 6 11 11 C 1.46498 * 119.48733 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46962 * 269.98147 * 11 10 8 13 13 O 1.21284 * 120.00501 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99705 * 179.97438 * 12 11 10 15 15 C 1.37100 * 120.00090 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99714 * 0.02562 * 15 14 12 17 17 C 1.38944 * 119.99989 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99934 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47149 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47462 * 119.99903 * 19 17 15 22 22 H 1.48500 * 109.47194 * 240.00112 * 19 17 15 23 23 H 1.09003 * 109.47282 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46955 * 119.99933 * 1 2 3 25 25 H 1.08996 * 109.47664 * 240.00121 * 1 2 3 26 26 H 1.08007 * 120.49285 * 179.70085 * 6 3 2 27 27 H 1.07998 * 120.24134 * 180.24627 * 7 6 3 28 28 H 1.09003 * 109.46862 * 29.97940 * 11 10 8 29 29 H 1.08996 * 109.47405 * 149.97779 * 11 10 8 30 30 H 0.97005 * 119.99740 * 0.02562 * 14 12 11 31 31 H 0.97005 * 119.99686 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1977 0.0000 4 6 1.4771 2.4384 -0.0006 5 7 0.9098 3.4225 -0.0015 6 6 3.6081 1.1904 -0.0059 7 6 4.2618 -0.0022 0.0001 8 6 3.5211 -1.1987 0.0010 9 8 4.1031 -2.2708 0.0020 10 7 2.1760 -1.1693 0.0006 11 6 1.4273 -2.4285 0.0010 12 6 1.1706 -2.8607 -1.4197 13 8 1.5731 -2.1834 -2.3419 14 7 0.4938 -4.0000 -1.6656 15 6 0.2598 -4.3930 -2.9581 16 1 0.6182 -3.7899 -3.7791 17 6 -0.4384 -5.5672 -3.2116 18 7 -0.8750 -6.3008 -2.2125 19 14 -0.7566 -6.1031 -4.9725 20 1 -0.1668 -5.1104 -5.9063 21 1 -0.1362 -7.4320 -5.2054 22 1 -2.2204 -6.1925 -5.2059 23 1 -0.3634 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3634 -0.5138 0.8899 26 1 4.1609 2.1183 -0.0109 27 1 5.3414 -0.0307 -0.0002 28 1 2.0065 -3.1955 0.5151 29 1 0.4766 -2.2858 0.5147 30 1 0.1715 -4.5415 -0.9281 31 1 -1.3621 -7.1208 -2.3895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378953296.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:21 Heat of formation + Delta-G solvation = -29.879799 kcal Electronic energy + Delta-G solvation = -18868.497175 eV Core-core repulsion = 15728.891902 eV Total energy + Delta-G solvation = -3139.605273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.83439 -40.00670 -38.83888 -37.42228 -36.15640 -35.50995 -33.38562 -32.90481 -29.92020 -28.92509 -26.76745 -24.68100 -23.67338 -21.59410 -20.44636 -19.85641 -18.75080 -18.37140 -17.64294 -16.89740 -16.62151 -16.19013 -15.82402 -15.60053 -14.98935 -14.95839 -14.75301 -14.58441 -14.49689 -14.11785 -13.81240 -13.57732 -13.32382 -13.10459 -12.91279 -12.67479 -12.47712 -12.41434 -12.13993 -11.58523 -11.44683 -11.18384 -10.46542 -10.09587 -9.03057 -8.52223 -6.01465 -0.29848 0.27387 1.23965 1.33440 1.42582 1.55333 1.70899 1.88528 2.03051 2.27137 2.68832 2.88000 3.05553 3.13409 3.24013 3.62473 3.72632 3.95987 4.18897 4.21744 4.34462 4.40425 4.48034 4.73796 4.86447 4.99311 5.09821 5.34067 5.37681 5.88411 5.90307 6.48004 6.50220 6.83297 7.04656 7.42387 7.95887 8.64336 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.005161 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.895149 B = 5424.054423 C = 5876.644213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.251 3.749 3 C -0.160 4.160 4 C 0.303 3.697 5 N -0.459 5.459 6 C 0.040 3.960 7 C -0.256 4.256 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.461 5.461 11 C 0.077 3.923 12 C 0.425 3.575 13 O -0.625 6.625 14 N -0.556 5.556 15 C -0.334 4.334 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.912 5.912 19 Si 0.990 3.010 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.267 1.267 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.131 0.869 26 H 0.182 0.818 27 H 0.172 0.828 28 H 0.126 0.874 29 H 0.161 0.839 30 H 0.401 0.599 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 10.577 8.872 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.133 3.867 3 C -0.169 4.169 4 C -0.011 4.011 5 N -0.137 5.137 6 C 0.018 3.982 7 C -0.277 4.277 8 C 0.312 3.688 9 O -0.469 6.469 10 N -0.167 5.167 11 C -0.048 4.048 12 C 0.211 3.789 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.464 4.464 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.552 5.552 19 Si 0.814 3.186 20 H -0.200 1.200 21 H -0.198 1.198 22 H -0.192 1.192 23 H 0.117 0.883 24 H 0.105 0.895 25 H 0.149 0.851 26 H 0.199 0.801 27 H 0.190 0.810 28 H 0.144 0.856 29 H 0.178 0.822 30 H 0.236 0.764 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.734 11.589 8.276 14.346 hybrid contribution 0.012 -1.340 -0.691 1.508 sum 1.747 10.249 7.586 12.870 Atomic orbital electron populations 1.21449 0.85917 1.06423 1.06051 1.21098 0.96212 0.84190 0.85240 1.15137 0.92891 0.85067 1.23788 1.24751 0.92474 0.91880 0.92007 1.81311 1.08712 1.11476 1.12167 1.21542 0.90741 0.99843 0.86080 1.21972 1.02171 0.89680 1.13880 1.17916 0.80689 0.92293 0.77902 1.90928 1.68504 1.33550 1.53882 1.44815 1.08329 1.06825 1.56704 1.21900 1.00600 0.86503 0.95789 1.20635 0.83427 0.83504 0.91291 1.90553 1.56791 1.56657 1.47242 1.41795 1.48479 1.20393 1.08604 1.19656 1.34866 1.07178 0.84691 0.90330 1.25987 0.95739 0.95391 1.03461 1.69652 1.37349 1.15448 1.32730 0.84910 0.78421 0.78058 0.77207 1.19996 1.19808 1.19216 0.88307 0.89493 0.85116 0.80062 0.81042 0.85617 0.82152 0.76442 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.57 71.24 0.61 -2.03 16 2 C 0.25 5.93 6.70 42.06 0.28 6.21 16 3 C -0.16 -3.36 5.74 -21.27 -0.12 -3.48 16 4 C 0.30 6.58 13.48 88.33 1.19 7.77 16 5 N -0.46 -11.68 18.54 19.00 0.35 -11.33 16 6 C 0.04 0.73 9.83 22.58 0.22 0.95 16 7 C -0.26 -6.20 9.97 22.36 0.22 -5.98 16 8 C 0.51 17.01 7.39 84.89 0.63 17.63 16 9 O -0.58 -24.72 16.59 -5.29 -0.09 -24.81 16 10 N -0.46 -13.70 2.04 -639.04 -1.31 -15.00 16 11 C 0.08 2.35 5.33 85.63 0.46 2.81 16 12 C 0.43 18.72 7.64 87.66 0.67 19.39 16 13 O -0.62 -32.87 16.01 -3.04 -0.05 -32.91 16 14 N -0.56 -26.58 5.29 -306.99 -1.62 -28.21 16 15 C -0.33 -18.12 9.68 84.04 0.81 -17.30 16 16 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 17 C 0.00 -0.24 5.50 84.92 0.47 0.23 16 18 N -0.91 -46.64 13.05 21.66 0.28 -46.36 16 19 Si 0.99 41.38 29.55 68.60 2.03 43.41 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 H 0.10 1.67 6.40 -2.39 -0.02 1.65 16 24 H 0.09 2.04 7.89 -2.39 -0.02 2.02 16 25 H 0.13 1.53 7.35 -2.39 -0.02 1.51 16 26 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.13 3.85 7.36 -2.39 -0.02 3.83 16 29 H 0.16 3.24 6.35 -2.39 -0.02 3.23 16 30 H 0.40 17.80 7.90 -92.70 -0.73 17.06 16 31 H 0.28 13.40 8.31 -92.70 -0.77 12.63 16 Total: -1.00 -73.93 287.05 5.50 -68.42 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.47 Total: 20.56 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 5.44 Total: 26.22 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -2.29 Total: -100.89 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -0.14 Total: -57.72 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -73.93 5.50 -68.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378953296.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.545 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds