Wall clock time and date at job start Mon Mar 30 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40125 * 126.16881 * 2 1 4 4 H 0.97002 * 125.90481 * 0.04991 * 3 2 1 5 5 C 1.36600 * 108.17902 * 180.15861 * 3 2 1 6 6 C 1.50703 * 125.76882 * 179.84141 * 5 3 2 7 7 N 1.46498 * 109.47212 * 294.71858 * 6 5 3 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42104 * 106.40175 * 178.81816 * 8 7 6 10 10 O 1.42095 * 106.40656 * 311.73868 * 8 7 6 11 11 C 1.76203 * 107.21635 * 65.28001 * 8 7 6 12 12 H 1.07994 * 119.99889 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99706 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99786 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 120.00282 * 0.02562 * 13 11 8 16 16 H 1.48494 * 109.47370 * 89.99815 * 15 13 11 17 17 H 1.48501 * 109.46920 * 209.99965 * 15 13 11 18 18 H 1.48503 * 109.47075 * 329.99362 * 15 13 11 19 19 C 1.34821 * 108.45463 * 359.58144 * 5 3 2 20 20 C 1.34879 * 126.16442 * 179.69389 * 2 1 3 21 21 O 1.21773 * 126.19134 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47143 * 180.27681 * 1 2 3 23 23 H 1.08998 * 109.47463 * 300.27935 * 1 2 3 24 24 H 1.09007 * 109.46835 * 60.27659 * 1 2 3 25 25 H 1.08996 * 109.47013 * 174.72164 * 6 5 3 26 26 H 1.08999 * 109.47128 * 54.72377 * 6 5 3 27 27 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 28 28 H 0.96999 * 120.00275 * 180.02562 * 14 13 11 29 29 H 1.07993 * 125.95831 * 180.27712 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2919 1.1312 0.0000 4 1 1.9934 2.0541 0.0007 5 6 3.5912 0.7093 -0.0036 6 6 4.8066 1.6003 -0.0082 7 7 4.8552 2.3535 -1.2638 8 16 5.8475 3.6723 -1.4003 9 8 5.6894 4.1579 -2.7264 10 8 5.6154 4.4702 -0.2476 11 6 7.5065 3.0915 -1.2775 12 1 7.7011 2.0382 -1.1395 13 6 8.5563 3.9816 -1.3588 14 7 9.7946 3.5481 -1.2678 15 14 8.2198 5.8034 -1.5984 16 1 8.0897 6.4612 -0.2734 17 1 9.3432 6.4197 -2.3489 18 1 6.9589 5.9774 -2.3634 19 6 3.6021 -0.6388 0.0035 20 6 2.2609 -1.0889 0.0058 21 8 1.8918 -2.2493 0.0116 22 1 -0.3633 -1.0276 0.0050 23 1 -0.3634 0.5181 0.8874 24 1 -0.3633 0.5096 -0.8925 25 1 5.7049 0.9898 0.0841 26 1 4.7514 2.2946 0.8302 27 1 4.3030 2.0824 -2.0138 28 1 10.5332 4.1743 -1.3246 29 1 4.4814 -1.2658 0.0071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392753435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:28 Heat of formation + Delta-G solvation = -32.663636 kcal Electronic energy + Delta-G solvation = -17470.724430 eV Core-core repulsion = 14330.609297 eV Total energy + Delta-G solvation = -3140.115132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.56766 -37.21577 -35.84065 -35.20711 -34.59542 -33.12369 -32.82762 -29.97679 -27.99082 -26.50472 -25.03078 -21.10448 -20.66006 -19.33277 -18.30601 -17.67157 -16.78646 -16.15953 -15.82690 -15.73333 -15.09958 -14.62149 -14.13456 -13.62633 -13.48913 -13.41275 -13.36222 -13.00635 -12.82688 -12.70984 -12.20590 -11.62064 -11.46210 -10.94334 -10.78675 -10.63316 -10.00359 -9.80537 -9.52407 -9.31889 -9.28163 -8.80547 -7.94531 -6.87673 -5.43589 1.40526 1.56185 1.99030 3.01639 3.11206 3.19535 3.29648 3.69807 3.87776 4.17524 4.42281 4.53911 4.77383 4.94895 5.12563 5.23917 5.24358 5.40912 5.60963 5.85578 5.91666 5.92387 6.27264 6.34403 7.07809 7.37081 7.39548 7.45994 8.12553 8.26712 8.62466 10.24412 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.045703 B = 0.005177 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.508701 B = 5407.220602 C = 5767.219336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.424 5.424 3 N -0.492 5.492 4 H 0.442 0.558 5 C 0.189 3.811 6 C 0.179 3.821 7 N -1.125 6.125 8 S 2.675 3.325 9 O -1.003 7.003 10 O -1.009 7.009 11 C -1.016 5.016 12 H 0.124 0.876 13 C 0.153 3.847 14 N -0.820 5.820 15 Si 0.802 3.198 16 H -0.246 1.246 17 H -0.255 1.255 18 H -0.221 1.221 19 C -0.333 4.333 20 C 0.532 3.468 21 O -0.560 6.560 22 H 0.105 0.895 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.409 0.591 28 H 0.282 0.718 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.344 -2.351 3.032 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.248 5.248 3 N -0.215 5.215 4 H 0.288 0.712 5 C 0.070 3.930 6 C 0.051 3.949 7 N -0.881 5.881 8 S 2.777 3.223 9 O -0.993 6.993 10 O -0.999 6.999 11 C -1.151 5.151 12 H 0.142 0.858 13 C -0.067 4.067 14 N -0.448 5.448 15 Si 0.622 3.378 16 H -0.170 1.170 17 H -0.179 1.179 18 H -0.143 1.143 19 C -0.365 4.365 20 C 0.331 3.669 21 O -0.440 6.440 22 H 0.123 0.877 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.241 0.759 28 H 0.092 0.908 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.872 -2.007 3.087 14.352 hybrid contribution 0.139 0.695 -0.364 0.796 sum -13.733 -1.313 2.724 14.062 Atomic orbital electron populations 1.21848 0.74674 1.05330 1.02260 1.48341 1.03989 0.99285 1.73168 1.43956 1.00900 1.02091 1.74542 0.71195 1.21123 0.84063 0.94929 0.92891 1.20022 0.92681 0.94088 0.88126 1.55645 1.61971 1.50446 1.20044 1.01433 0.76056 0.71559 0.73296 1.93497 1.88079 1.78513 1.39255 1.93414 1.87149 1.67152 1.52185 1.30378 1.11929 1.06591 1.66183 0.85775 1.24424 0.94334 0.99103 0.88845 1.69980 0.98942 1.36808 1.39092 0.87854 0.83165 0.84904 0.81834 1.16995 1.17882 1.14313 1.21836 0.98235 0.93567 1.22855 1.17045 0.87054 0.83600 0.79227 1.90845 1.80507 1.15984 1.56640 0.87664 0.91285 0.91264 0.87574 0.88000 0.75873 0.90778 0.81640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.53 59.85 0.69 1.47 15 2 N -0.42 -5.00 4.02 -70.06 -0.28 -5.28 15 3 N -0.49 -5.21 7.30 33.67 0.25 -4.97 15 4 H 0.44 3.51 8.96 -182.58 -1.64 1.87 15 5 C 0.19 2.32 6.60 -81.68 -0.54 1.78 15 6 C 0.18 2.39 6.78 -5.19 -0.04 2.36 15 7 N -1.13 -17.93 5.99 -11.66 -0.07 -18.00 15 8 S 2.67 59.49 4.24 -107.50 -0.46 59.03 15 9 O -1.00 -24.80 16.02 -57.17 -0.92 -25.71 15 10 O -1.01 -23.85 16.29 -57.17 -0.93 -24.78 15 11 C -1.02 -26.19 10.26 30.60 0.31 -25.87 15 12 H 0.12 3.19 8.06 -52.49 -0.42 2.77 15 13 C 0.15 4.17 5.47 -17.82 -0.10 4.07 15 14 N -0.82 -22.67 13.96 55.43 0.77 -21.90 15 15 Si 0.80 19.54 26.54 -169.99 -4.51 15.03 15 16 H -0.25 -5.84 7.11 56.52 0.40 -5.44 15 17 H -0.25 -5.76 7.11 56.52 0.40 -5.35 15 18 H -0.22 -5.45 5.61 56.52 0.32 -5.13 15 19 C -0.33 -4.58 10.71 -39.56 -0.42 -5.01 15 20 C 0.53 8.18 7.95 -14.98 -0.12 8.06 15 21 O -0.56 -10.45 17.65 5.12 0.09 -10.36 15 22 H 0.10 0.86 7.75 -51.93 -0.40 0.46 15 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 15 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 15 25 H 0.11 1.35 8.10 -51.93 -0.42 0.93 15 26 H 0.10 1.30 7.74 -51.93 -0.40 0.89 15 27 H 0.41 5.69 8.64 -34.47 -0.30 5.39 15 28 H 0.28 7.08 8.31 -40.82 -0.34 6.74 15 29 H 0.17 2.10 8.06 -52.49 -0.42 1.68 15 LS Contribution 273.02 15.07 4.11 4.11 Total: -1.00 -34.98 273.02 -6.22 -41.21 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.07 Total: 4.78 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.21 Total: -13.15 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.67 Total: -50.15 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.76 Total: -60.86 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.51 Total: 15.03 kcal Atomic # 16 Polarization: 59.49 SS G_CDS: -0.46 Total: 59.03 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.98 -6.22 -41.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392753435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.542 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds