Wall clock time and date at job start Mon Mar 30 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40125 * 126.16881 * 2 1 4 4 H 0.97002 * 125.90481 * 0.04991 * 3 2 1 5 5 C 1.36600 * 108.17902 * 180.15861 * 3 2 1 6 6 C 1.50703 * 125.76882 * 179.84141 * 5 3 2 7 7 N 1.46498 * 109.47212 * 294.71858 * 6 5 3 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42104 * 106.40175 * 178.81816 * 8 7 6 10 10 O 1.42095 * 106.40656 * 311.73868 * 8 7 6 11 11 C 1.76203 * 107.21635 * 65.28001 * 8 7 6 12 12 H 1.07994 * 119.99889 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99706 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99786 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 120.00282 * 0.02562 * 13 11 8 16 16 H 1.48494 * 109.47370 * 89.99815 * 15 13 11 17 17 H 1.48501 * 109.46920 * 209.99965 * 15 13 11 18 18 H 1.48503 * 109.47075 * 329.99362 * 15 13 11 19 19 C 1.34821 * 108.45463 * 359.58144 * 5 3 2 20 20 C 1.34879 * 126.16442 * 179.69389 * 2 1 3 21 21 O 1.21773 * 126.19134 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47143 * 180.27681 * 1 2 3 23 23 H 1.08998 * 109.47463 * 300.27935 * 1 2 3 24 24 H 1.09007 * 109.46835 * 60.27659 * 1 2 3 25 25 H 1.08996 * 109.47013 * 174.72164 * 6 5 3 26 26 H 1.08999 * 109.47128 * 54.72377 * 6 5 3 27 27 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 28 28 H 0.96999 * 120.00275 * 180.02562 * 14 13 11 29 29 H 1.07993 * 125.95831 * 180.27712 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2919 1.1312 0.0000 4 1 1.9934 2.0541 0.0007 5 6 3.5912 0.7093 -0.0036 6 6 4.8066 1.6003 -0.0082 7 7 4.8552 2.3535 -1.2638 8 16 5.8475 3.6723 -1.4003 9 8 5.6894 4.1579 -2.7264 10 8 5.6154 4.4702 -0.2476 11 6 7.5065 3.0915 -1.2775 12 1 7.7011 2.0382 -1.1395 13 6 8.5563 3.9816 -1.3588 14 7 9.7946 3.5481 -1.2678 15 14 8.2198 5.8034 -1.5984 16 1 8.0897 6.4612 -0.2734 17 1 9.3432 6.4197 -2.3489 18 1 6.9589 5.9774 -2.3634 19 6 3.6021 -0.6388 0.0035 20 6 2.2609 -1.0889 0.0058 21 8 1.8918 -2.2493 0.0116 22 1 -0.3633 -1.0276 0.0050 23 1 -0.3634 0.5181 0.8874 24 1 -0.3633 0.5096 -0.8925 25 1 5.7049 0.9898 0.0841 26 1 4.7514 2.2946 0.8302 27 1 4.3030 2.0824 -2.0138 28 1 10.5332 4.1743 -1.3246 29 1 4.4814 -1.2658 0.0071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392753435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:28 Heat of formation + Delta-G solvation = -63.291738 kcal Electronic energy + Delta-G solvation = -17472.052564 eV Core-core repulsion = 14330.609297 eV Total energy + Delta-G solvation = -3141.443266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.062 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.60243 -38.39555 -37.66901 -36.48186 -36.42934 -35.12696 -33.84994 -31.01532 -29.00877 -28.48735 -26.04258 -22.14311 -21.73536 -21.08549 -19.49824 -19.32836 -18.52615 -17.35697 -17.14934 -16.81101 -16.72307 -15.84615 -15.77805 -15.26585 -14.97698 -14.63771 -14.53489 -14.22720 -14.15989 -13.44136 -13.41335 -13.23968 -13.23102 -12.82079 -12.66632 -12.52757 -11.82076 -11.28186 -11.22866 -10.98530 -10.46913 -10.19996 -8.99577 -8.90442 -7.46523 0.01755 0.57474 0.66505 1.11509 1.20037 1.26513 1.93721 2.15162 2.48354 2.63121 2.76689 3.32887 3.43167 4.04764 4.06138 4.32276 4.41626 4.47714 4.54180 4.68252 4.81261 4.89539 4.92736 5.31113 5.43544 6.05150 6.09653 6.19588 6.51762 6.61264 7.18159 8.26700 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.045703 B = 0.005177 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.508701 B = 5407.220602 C = 5767.219336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.417 5.417 3 N -0.473 5.473 4 H 0.458 0.542 5 C 0.204 3.796 6 C 0.174 3.826 7 N -1.109 6.109 8 S 2.707 3.293 9 O -1.027 7.027 10 O -1.020 7.020 11 C -1.038 5.038 12 H 0.113 0.887 13 C 0.108 3.892 14 N -0.855 5.855 15 Si 0.824 3.176 16 H -0.237 1.237 17 H -0.230 1.230 18 H -0.226 1.226 19 C -0.349 4.349 20 C 0.512 3.488 21 O -0.607 6.607 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.422 0.578 28 H 0.290 0.710 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.753 -1.121 3.222 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.239 5.239 3 N -0.196 5.196 4 H 0.307 0.693 5 C 0.083 3.917 6 C 0.047 3.953 7 N -0.869 5.869 8 S 2.806 3.194 9 O -1.017 7.017 10 O -1.010 7.010 11 C -1.170 5.170 12 H 0.131 0.869 13 C -0.109 4.109 14 N -0.485 5.485 15 Si 0.641 3.359 16 H -0.161 1.161 17 H -0.152 1.152 18 H -0.148 1.148 19 C -0.381 4.381 20 C 0.312 3.688 21 O -0.491 6.491 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.257 0.743 28 H 0.100 0.900 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.293 -0.720 3.271 15.655 hybrid contribution 0.486 0.277 -0.394 0.685 sum -14.807 -0.443 2.877 15.090 Atomic orbital electron populations 1.22204 0.72127 1.05754 1.04771 1.48466 1.05286 0.98841 1.71280 1.44016 1.00332 1.02562 1.72685 0.69288 1.20756 0.84346 0.94021 0.92602 1.20210 0.93605 0.94382 0.87083 1.55076 1.60705 1.49503 1.21664 1.00336 0.74808 0.71985 0.72281 1.93461 1.88158 1.79624 1.40443 1.93395 1.87000 1.68082 1.52497 1.31013 1.14535 1.06323 1.65178 0.86889 1.25160 0.94584 1.02199 0.88938 1.70020 0.99741 1.38227 1.40550 0.87503 0.83812 0.82002 0.82537 1.16053 1.15207 1.14795 1.21917 0.98090 0.94314 1.23824 1.17242 0.87992 0.83704 0.79912 1.90806 1.81300 1.17779 1.59260 0.88359 0.88619 0.88839 0.86817 0.86673 0.74269 0.89994 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.53 127.77 1.47 2.64 15 2 N -0.42 -8.92 4.02 -493.70 -1.98 -10.90 15 3 N -0.47 -8.56 7.30 -47.38 -0.35 -8.90 15 4 H 0.46 5.47 8.96 -213.30 -1.91 3.56 15 5 C 0.20 4.54 6.60 41.03 0.27 4.81 15 6 C 0.17 4.24 6.78 85.63 0.58 4.82 15 7 N -1.11 -32.65 5.99 -190.79 -1.14 -33.80 15 8 S 2.71 115.46 4.24 -56.49 -0.24 115.22 15 9 O -1.03 -48.96 16.02 -128.00 -2.05 -51.01 15 10 O -1.02 -45.88 16.29 -128.00 -2.09 -47.96 15 11 C -1.04 -52.97 10.26 67.73 0.70 -52.27 15 12 H 0.11 5.83 8.06 -2.91 -0.02 5.81 15 13 C 0.11 5.82 5.47 84.65 0.46 6.29 15 14 N -0.86 -47.36 13.96 21.45 0.30 -47.06 15 15 Si 0.82 38.52 26.54 68.60 1.82 40.34 15 16 H -0.24 -10.67 7.11 99.48 0.71 -9.96 15 17 H -0.23 -9.70 7.11 99.48 0.71 -8.99 15 18 H -0.23 -10.69 5.61 99.48 0.56 -10.13 15 19 C -0.35 -9.26 10.71 22.28 0.24 -9.02 15 20 C 0.51 15.39 7.95 85.02 0.68 16.06 15 21 O -0.61 -22.99 17.65 -4.58 -0.08 -23.07 15 22 H 0.10 1.48 7.75 -2.39 -0.02 1.46 15 23 H 0.10 0.77 8.14 -2.39 -0.02 0.75 15 24 H 0.09 0.80 8.14 -2.38 -0.02 0.78 15 25 H 0.11 2.67 8.10 -2.39 -0.02 2.66 15 26 H 0.12 2.58 7.74 -2.39 -0.02 2.56 15 27 H 0.42 10.56 8.64 -96.74 -0.84 9.72 15 28 H 0.29 14.54 8.31 -92.71 -0.77 13.77 15 29 H 0.17 4.22 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -74.55 273.02 -3.10 -77.65 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -1.69 Total: 16.17 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 4.40 Total: -26.67 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -3.17 Total: -100.66 kcal Atomic # 8 Polarization: -117.83 SS G_CDS: -4.22 Total: -122.04 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.82 Total: 40.34 kcal Atomic # 16 Polarization: 115.46 SS G_CDS: -0.24 Total: 115.22 kcal Total: -74.55 -3.10 -77.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392753435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.357 kcal (2) G-P(sol) polarization free energy of solvation -74.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds