Wall clock time and date at job start Mon Mar 30 2020 04:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00316 * 2 1 4 4 H 1.48493 * 109.46915 * 269.99482 * 3 2 1 5 5 H 1.48497 * 109.47043 * 29.99344 * 3 2 1 6 6 H 1.48497 * 109.46919 * 149.99400 * 3 2 1 7 7 C 1.37880 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99908 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00020 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40443 * 66.45936 * 9 7 2 11 11 O 1.42099 * 106.40218 * 293.53470 * 9 7 2 12 12 N 1.65603 * 107.21717 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99976 * 65.00173 * 12 9 7 14 14 C 1.53000 * 109.47176 * 164.99823 * 13 12 9 15 15 C 1.50703 * 109.47059 * 180.02562 * 14 13 12 16 16 C 1.35271 * 126.08555 * 84.99683 * 15 14 13 17 17 C 1.40293 * 107.87644 * 180.02562 * 16 15 14 18 18 O 1.35986 * 125.95827 * 179.97438 * 17 16 15 19 19 N 1.31111 * 108.08163 * 0.24531 * 17 16 15 20 20 N 1.34945 * 126.08505 * 265.02879 * 15 14 13 21 21 H 0.97005 * 125.98573 * 359.96722 * 20 15 14 22 22 H 0.97006 * 119.99755 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00330 * 244.99711 * 12 9 7 24 24 H 1.09002 * 109.46983 * 44.99818 * 13 12 9 25 25 H 1.08994 * 109.46957 * 284.99953 * 13 12 9 26 26 H 1.08997 * 109.47117 * 59.99625 * 14 13 12 27 27 H 1.09002 * 109.46988 * 299.99965 * 14 13 12 28 28 H 1.08007 * 126.06660 * 0.02786 * 16 15 14 29 29 H 0.96700 * 114.00288 * 90.00101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4400 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1233 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0005 13 6 3.1391 -4.1090 1.1504 14 6 3.8044 -5.4848 1.0771 15 6 4.7204 -5.6635 2.2603 16 6 4.3592 -6.0990 3.4890 17 6 5.5083 -6.1197 4.2936 18 8 5.5626 -6.4981 5.5986 19 7 6.5196 -5.7050 3.5696 20 7 6.0470 -5.4170 2.2828 21 1 6.5793 -5.0936 1.5392 22 1 -0.4850 0.8401 -0.0004 23 1 2.3169 -4.5326 -0.7608 24 1 2.5619 -4.0331 2.0720 25 1 3.9052 -3.3338 1.1366 26 1 4.3814 -5.5607 0.1556 27 1 3.0382 -6.2600 1.0909 28 1 3.3629 -6.3809 3.7962 29 1 5.7371 -7.4404 5.7280 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392836016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:46 Heat of formation + Delta-G solvation = -63.559534 kcal Electronic energy + Delta-G solvation = -17156.908494 eV Core-core repulsion = 14015.453615 eV Total energy + Delta-G solvation = -3141.454879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44159 -37.41328 -35.67760 -35.12397 -33.97605 -33.10853 -31.72003 -30.54328 -27.85114 -26.15323 -23.13526 -21.83551 -20.62437 -19.07786 -17.97966 -17.52225 -17.13418 -16.17982 -15.71656 -15.25509 -14.96085 -14.68710 -13.97685 -13.93273 -13.62461 -13.40605 -13.21463 -12.12388 -12.05590 -11.93549 -11.55831 -11.23868 -11.22154 -10.61946 -10.45988 -10.33946 -10.31242 -10.21469 -9.42217 -9.26487 -9.08805 -8.80179 -8.54000 -6.72164 -5.34311 1.61648 2.25079 2.42004 2.63438 3.05516 3.12663 3.18659 3.86146 4.04976 4.48302 4.62779 4.81947 4.91435 5.09796 5.22393 5.51507 5.53931 5.72158 5.83621 6.09090 6.12228 6.25121 6.43851 6.75552 7.07446 7.29910 7.39803 7.49164 7.82436 7.94191 8.87178 10.22124 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.005041 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.824694 B = 5553.461029 C = 6042.422642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.005 7.005 12 N -1.138 6.138 13 C 0.132 3.868 14 C -0.069 4.069 15 C 0.113 3.887 16 C -0.280 4.280 17 C 0.259 3.741 18 O -0.461 6.461 19 N -0.306 5.306 20 N -0.457 5.457 21 H 0.443 0.557 22 H 0.291 0.709 23 H 0.402 0.598 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 -11.574 3.044 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.815 3.185 10 O -0.996 6.996 11 O -0.994 6.994 12 N -0.892 5.892 13 C 0.004 3.996 14 C -0.110 4.110 15 C -0.017 4.017 16 C -0.310 4.310 17 C 0.052 3.948 18 O -0.264 6.264 19 N -0.141 5.141 20 N -0.170 5.170 21 H 0.289 0.711 22 H 0.101 0.899 23 H 0.233 0.767 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.174 0.826 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 10.362 -10.720 3.464 15.307 hybrid contribution 0.622 0.499 -0.659 1.034 sum 10.983 -10.221 2.805 15.264 Atomic orbital electron populations 1.69892 1.06764 1.30761 1.39983 1.24737 0.94465 1.00819 0.88495 0.86169 0.80176 0.80133 0.79122 1.19225 1.19937 1.18721 1.30534 1.06017 1.11920 1.66993 0.88085 1.00400 0.72024 0.73201 0.72839 1.93379 1.72997 1.87614 1.45608 1.93365 1.72723 1.87442 1.45916 1.56029 1.55777 1.51324 1.26119 1.20986 0.93661 0.94669 0.90302 1.20600 0.97077 0.99790 0.93485 1.20920 0.85195 0.98273 0.97277 1.21452 1.00896 1.15955 0.92687 1.19847 0.90750 0.99149 0.85009 1.84905 1.93472 1.31098 1.16959 1.77324 1.21963 1.24379 0.90412 1.45966 1.06735 1.54362 1.09952 0.71128 0.89853 0.76724 0.89855 0.92093 0.89724 0.88052 0.82642 0.74719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.60 13.19 55.43 0.73 -23.87 15 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 15 3 Si 0.92 20.43 29.54 -169.99 -5.02 15.41 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 7 C -1.02 -27.42 9.72 30.60 0.30 -27.13 15 8 H 0.10 2.47 7.81 -52.49 -0.41 2.06 15 9 S 2.72 69.17 5.02 -107.50 -0.54 68.63 15 10 O -1.01 -28.51 18.02 -57.17 -1.03 -29.54 15 11 O -1.00 -28.53 17.49 -57.17 -1.00 -29.53 15 12 N -1.14 -20.37 6.00 -10.61 -0.06 -20.43 15 13 C 0.13 2.00 6.21 -4.04 -0.03 1.98 15 14 C -0.07 -0.73 5.90 -27.88 -0.16 -0.89 15 15 C 0.11 1.29 6.46 -82.28 -0.53 0.76 15 16 C -0.28 -3.44 10.73 -39.87 -0.43 -3.87 15 17 C 0.26 3.37 8.47 -17.09 -0.14 3.22 15 18 O -0.46 -5.12 13.66 -19.70 -0.27 -5.39 15 19 N -0.31 -4.15 12.71 30.56 0.39 -3.76 15 20 N -0.46 -5.06 7.35 33.47 0.25 -4.82 15 21 H 0.44 3.54 8.96 -182.61 -1.64 1.91 15 22 H 0.29 7.62 8.31 -40.82 -0.34 7.28 15 23 H 0.40 5.92 8.65 -34.48 -0.30 5.62 15 24 H 0.08 1.40 7.75 -51.93 -0.40 0.99 15 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 15 28 H 0.16 1.71 8.06 -52.48 -0.42 1.29 15 29 H 0.40 2.12 9.06 45.56 0.41 2.53 15 LS Contribution 280.29 15.07 4.22 4.22 Total: -1.00 -37.93 280.29 -6.59 -44.52 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.16 Total: 6.92 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.09 Total: -22.36 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 1.30 Total: -52.88 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -2.30 Total: -64.46 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 69.17 SS G_CDS: -0.54 Total: 68.63 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -37.93 -6.59 -44.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392836016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.042 kcal (2) G-P(sol) polarization free energy of solvation -37.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds