Wall clock time and date at job start Mon Mar 30 2020 04:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00316 * 2 1 4 4 H 1.48493 * 109.46915 * 269.99482 * 3 2 1 5 5 H 1.48497 * 109.47043 * 29.99344 * 3 2 1 6 6 H 1.48497 * 109.46919 * 149.99400 * 3 2 1 7 7 C 1.37880 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99908 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00020 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40443 * 66.45936 * 9 7 2 11 11 O 1.42099 * 106.40218 * 293.53470 * 9 7 2 12 12 N 1.65603 * 107.21717 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99976 * 65.00173 * 12 9 7 14 14 C 1.53000 * 109.47176 * 164.99823 * 13 12 9 15 15 C 1.50703 * 109.47059 * 180.02562 * 14 13 12 16 16 C 1.35271 * 126.08555 * 84.99683 * 15 14 13 17 17 C 1.40293 * 107.87644 * 180.02562 * 16 15 14 18 18 O 1.35986 * 125.95827 * 179.97438 * 17 16 15 19 19 N 1.31111 * 108.08163 * 0.24531 * 17 16 15 20 20 N 1.34945 * 126.08505 * 265.02879 * 15 14 13 21 21 H 0.97005 * 125.98573 * 359.96722 * 20 15 14 22 22 H 0.97006 * 119.99755 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00330 * 244.99711 * 12 9 7 24 24 H 1.09002 * 109.46983 * 44.99818 * 13 12 9 25 25 H 1.08994 * 109.46957 * 284.99953 * 13 12 9 26 26 H 1.08997 * 109.47117 * 59.99625 * 14 13 12 27 27 H 1.09002 * 109.46988 * 299.99965 * 14 13 12 28 28 H 1.08007 * 126.06660 * 0.02786 * 16 15 14 29 29 H 0.96700 * 114.00288 * 90.00101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4400 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1233 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0005 13 6 3.1391 -4.1090 1.1504 14 6 3.8044 -5.4848 1.0771 15 6 4.7204 -5.6635 2.2603 16 6 4.3592 -6.0990 3.4890 17 6 5.5083 -6.1197 4.2936 18 8 5.5626 -6.4981 5.5986 19 7 6.5196 -5.7050 3.5696 20 7 6.0470 -5.4170 2.2828 21 1 6.5793 -5.0936 1.5392 22 1 -0.4850 0.8401 -0.0004 23 1 2.3169 -4.5326 -0.7608 24 1 2.5619 -4.0331 2.0720 25 1 3.9052 -3.3338 1.1366 26 1 4.3814 -5.5607 0.1556 27 1 3.0382 -6.2600 1.0909 28 1 3.3629 -6.3809 3.7962 29 1 5.7371 -7.4404 5.7280 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392836016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:46 Heat of formation + Delta-G solvation = -100.479935 kcal Electronic energy + Delta-G solvation = -17158.509483 eV Core-core repulsion = 14015.453615 eV Total energy + Delta-G solvation = -3143.055868 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.062 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.34362 -38.27744 -37.41994 -36.77080 -36.10558 -35.15886 -32.85254 -31.44641 -28.92909 -28.23754 -24.29970 -22.73958 -21.58462 -20.97328 -19.48198 -18.63278 -18.36570 -17.96271 -17.22734 -16.75209 -16.23405 -16.06276 -15.58457 -15.41135 -14.72889 -14.54941 -14.38221 -13.97875 -13.34482 -13.26665 -13.01091 -12.85114 -12.57979 -12.45660 -12.34795 -12.30928 -12.23466 -11.24455 -11.24018 -10.98799 -10.35004 -10.19074 -9.70138 -8.74380 -7.46384 0.35063 0.74162 1.34370 1.35067 1.49782 1.51090 1.78186 2.21059 2.59553 2.91963 3.14652 3.72350 3.77072 4.03353 4.05688 4.27778 4.53340 4.60327 4.63191 4.79108 4.90421 5.15265 5.20593 5.33349 5.42153 5.91019 6.29275 6.46644 6.55778 6.77143 6.80572 8.21858 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.005041 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.824694 B = 5553.461029 C = 6042.422642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.249 1.249 7 C -1.042 5.042 8 H 0.121 0.879 9 S 2.724 3.276 10 O -1.043 7.043 11 O -1.043 7.043 12 N -1.117 6.117 13 C 0.123 3.877 14 C -0.056 4.056 15 C 0.118 3.882 16 C -0.296 4.296 17 C 0.250 3.750 18 O -0.473 6.473 19 N -0.334 5.334 20 N -0.447 5.447 21 H 0.456 0.544 22 H 0.298 0.702 23 H 0.420 0.580 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.163 0.837 29 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -11.665 2.681 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.173 1.173 7 C -1.175 5.175 8 H 0.139 0.861 9 S 2.824 3.176 10 O -1.033 7.033 11 O -1.033 7.033 12 N -0.878 5.878 13 C -0.004 4.004 14 C -0.096 4.096 15 C -0.013 4.013 16 C -0.326 4.326 17 C 0.044 3.956 18 O -0.279 6.279 19 N -0.169 5.169 20 N -0.162 5.162 21 H 0.304 0.696 22 H 0.108 0.892 23 H 0.255 0.745 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.180 0.820 29 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 12.218 -10.854 3.089 16.632 hybrid contribution 0.085 0.418 -0.507 0.662 sum 12.303 -10.436 2.582 16.338 Atomic orbital electron populations 1.69987 1.08716 1.32258 1.41530 1.25971 0.95338 1.05322 0.87667 0.85166 0.79133 0.75138 0.79989 1.17846 1.18978 1.17255 1.30947 1.07233 1.12796 1.66497 0.86129 0.99761 0.72532 0.73888 0.71423 1.93319 1.74789 1.88382 1.46807 1.93313 1.74471 1.88208 1.47283 1.55262 1.54928 1.49803 1.27800 1.21195 0.93088 0.97983 0.88175 1.20520 0.97418 0.97043 0.94603 1.20971 0.85349 0.97759 0.97194 1.21692 1.01211 1.16562 0.93169 1.20049 0.90903 0.99101 0.85511 1.84843 1.93510 1.33325 1.16247 1.77266 1.22807 1.25422 0.91445 1.45983 1.06795 1.53733 1.09697 0.69609 0.89175 0.74500 0.91846 0.91562 0.86392 0.86446 0.81957 0.72080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.73 13.19 21.45 0.28 -52.45 15 2 C 0.07 3.83 5.46 84.66 0.46 4.29 15 3 Si 0.99 40.75 29.54 68.60 2.03 42.78 15 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 7 C -1.04 -55.36 9.72 67.73 0.66 -54.71 15 8 H 0.12 5.69 7.81 -2.91 -0.02 5.67 15 9 S 2.72 139.26 5.02 -56.49 -0.28 138.97 15 10 O -1.04 -59.85 18.02 -128.00 -2.31 -62.15 15 11 O -1.04 -60.37 17.49 -128.00 -2.24 -62.61 15 12 N -1.12 -38.32 6.00 -187.49 -1.12 -39.44 15 13 C 0.12 3.50 6.21 86.38 0.54 4.04 15 14 C -0.06 -1.00 5.90 29.85 0.18 -0.82 15 15 C 0.12 2.42 6.46 41.40 0.27 2.69 15 16 C -0.30 -6.85 10.73 22.09 0.24 -6.62 15 17 C 0.25 6.22 8.47 85.30 0.72 6.94 15 18 O -0.47 -10.00 13.66 -93.39 -1.28 -11.27 15 19 N -0.33 -8.59 12.71 -170.49 -2.17 -10.75 15 20 N -0.45 -8.93 7.35 -48.03 -0.35 -9.28 15 21 H 0.46 6.11 8.96 -213.33 -1.91 4.19 15 22 H 0.30 15.84 8.31 -92.70 -0.77 15.07 15 23 H 0.42 11.41 8.65 -96.74 -0.84 10.57 15 24 H 0.06 2.08 7.75 -2.39 -0.02 2.07 15 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.12 1.38 8.14 -2.39 -0.02 1.36 15 27 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.16 3.39 8.06 -2.91 -0.02 3.37 15 29 H 0.42 3.97 9.06 -74.06 -0.67 3.30 15 Total: -1.00 -82.48 280.29 -6.57 -89.05 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -2.19 Total: 21.35 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 3.06 Total: -44.18 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.36 Total: -111.93 kcal Atomic # 8 Polarization: -130.22 SS G_CDS: -5.82 Total: -136.04 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 139.26 SS G_CDS: -0.28 Total: 138.97 kcal Total: -82.48 -6.57 -89.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392836016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.430 kcal (2) G-P(sol) polarization free energy of solvation -82.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds