Wall clock time and date at job start Mon Mar 30 2020 04:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48499 * 109.47115 * 269.99966 * 3 2 1 5 5 H 1.48499 * 109.46873 * 30.00267 * 3 2 1 6 6 H 1.48503 * 109.46912 * 150.00004 * 3 2 1 7 7 C 1.37890 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99621 * 0.02562 * 7 2 1 9 9 S 1.76197 * 119.99931 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40040 * 66.45724 * 9 7 2 11 11 O 1.42099 * 106.40125 * 293.54164 * 9 7 2 12 12 N 1.65596 * 107.21806 * 180.02562 * 9 7 2 13 13 C 1.47104 * 121.47222 * 270.23911 * 12 9 7 14 14 C 1.50352 * 109.09163 * 223.52113 * 13 12 9 15 15 C 1.31661 * 123.35971 * 348.48628 * 14 13 12 16 16 C 1.46946 * 117.84516 * 181.06826 * 15 14 13 17 17 O 1.21530 * 120.00060 * 0.02562 * 16 15 14 18 18 O 1.34796 * 120.00023 * 180.02562 * 16 15 14 19 19 C 1.49989 * 124.30660 * 1.05104 * 15 14 13 20 20 C 1.47298 * 121.32644 * 89.99987 * 12 9 7 21 21 H 0.96997 * 119.99837 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.70863 * 103.54069 * 13 12 9 23 23 H 1.09000 * 109.39682 * 343.30969 * 13 12 9 24 24 H 1.08002 * 118.32280 * 168.77845 * 14 13 12 25 25 H 0.96704 * 117.00171 * 180.02562 * 18 16 15 26 26 H 1.09003 * 109.31787 * 101.32298 * 19 15 14 27 27 H 1.09006 * 109.31187 * 220.74089 * 19 15 14 28 28 H 1.09006 * 109.75866 * 357.97809 * 20 12 9 29 29 H 1.08997 * 109.80186 * 237.24946 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7665 -1.1943 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1673 -0.6495 -1.2510 12 7 4.2566 -2.7760 -0.0025 13 6 4.4794 -3.5120 1.2516 14 6 5.7505 -4.3068 1.1362 15 6 6.3916 -4.4862 0.0003 16 6 7.6113 -5.3055 0.0225 17 8 7.9973 -5.7923 1.0670 18 8 8.3020 -5.5169 -1.1156 19 6 5.9586 -3.9098 -1.3150 20 6 4.4828 -3.5067 -1.2613 21 1 -0.4850 0.8400 0.0004 22 1 3.6434 -4.1866 1.4354 23 1 4.5659 -2.8044 2.0762 24 1 6.1560 -4.7574 2.0300 25 1 9.0977 -6.0628 -1.0513 26 1 6.5641 -3.0320 -1.5409 27 1 6.1008 -4.6537 -2.0990 28 1 4.2454 -2.8633 -2.1086 29 1 3.8560 -4.3980 -1.2886 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403636096.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:39 Heat of formation + Delta-G solvation = -151.000716 kcal Electronic energy + Delta-G solvation = -17964.461581 eV Core-core repulsion = 14786.922216 eV Total energy + Delta-G solvation = -3177.539364 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38480 -37.93467 -36.17774 -35.78870 -34.51335 -33.08258 -32.53204 -30.96268 -26.44171 -25.80118 -23.77787 -22.14922 -19.23480 -18.45798 -18.05638 -17.53092 -16.92318 -15.94024 -15.72430 -15.35907 -15.15763 -14.45962 -13.85758 -13.60114 -13.55356 -13.30678 -12.88151 -12.45516 -12.37032 -12.06955 -11.66946 -11.46741 -11.31563 -11.01540 -10.86571 -10.67897 -10.53013 -10.42023 -9.86484 -9.27033 -9.25278 -9.13399 -8.44671 -6.84815 -5.39506 1.11865 1.88515 2.88712 3.00136 3.04177 3.14396 3.23266 3.91250 4.04688 4.53794 4.77909 4.88585 5.06286 5.29855 5.38424 5.47746 5.56701 5.74106 5.76479 5.92986 6.00195 6.06328 6.25209 6.35579 6.47609 6.64304 7.17478 7.43895 7.80482 8.16710 8.65776 10.27481 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.046767 B = 0.006030 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.569957 B = 4642.471347 C = 4701.680301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.122 0.878 9 S 2.677 3.323 10 O -1.005 7.005 11 O -1.004 7.004 12 N -1.007 6.007 13 C 0.144 3.856 14 C -0.058 4.058 15 C -0.159 4.159 16 C 0.519 3.481 17 O -0.527 6.527 18 O -0.511 6.511 19 C -0.091 4.091 20 C 0.124 3.876 21 H 0.281 0.719 22 H 0.092 0.908 23 H 0.117 0.883 24 H 0.136 0.864 25 H 0.409 0.591 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.027 -9.240 -1.469 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.067 4.067 3 Si 0.620 3.380 4 H -0.169 1.169 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.140 0.860 9 S 2.781 3.219 10 O -0.995 6.995 11 O -0.995 6.995 12 N -0.842 5.842 13 C 0.018 3.982 14 C -0.078 4.078 15 C -0.160 4.160 16 C 0.365 3.635 17 O -0.418 6.418 18 O -0.322 6.322 19 C -0.129 4.129 20 C -0.002 4.002 21 H 0.092 0.908 22 H 0.110 0.890 23 H 0.135 0.865 24 H 0.153 0.847 25 H 0.266 0.734 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.188 -8.298 -1.225 13.197 hybrid contribution 0.120 -0.045 0.077 0.149 sum 10.308 -8.343 -1.149 13.311 Atomic orbital electron populations 1.69984 1.06590 1.29118 1.39392 1.24440 0.94797 0.98823 0.88632 0.87879 0.83616 0.84544 0.81923 1.16935 1.17816 1.14157 1.30517 1.15532 1.02205 1.66843 0.86009 1.01419 0.77249 0.69940 0.73300 1.93451 1.85375 1.75422 1.45249 1.93402 1.85356 1.75399 1.45296 1.58009 1.84649 1.31399 1.10168 1.20397 0.93802 0.95994 0.87977 1.23520 0.94453 0.92469 0.97317 1.19892 0.94801 1.03291 0.98035 1.21403 0.83631 0.77887 0.80548 1.90880 1.68917 1.49430 1.32532 1.84647 1.41683 1.68450 1.37373 1.20654 0.97609 1.01267 0.93387 1.21368 0.94352 0.97616 0.86837 0.90830 0.88992 0.86498 0.84664 0.73366 0.89854 0.89361 0.87991 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.34 13.96 55.43 0.77 -22.57 15 2 C 0.15 4.31 5.47 -17.81 -0.10 4.21 15 3 Si 0.80 20.18 26.54 -169.99 -4.51 15.67 15 4 H -0.25 -6.05 7.11 56.52 0.40 -5.64 15 5 H -0.25 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.22 -5.62 5.61 56.52 0.32 -5.30 15 7 C -1.02 -27.58 10.29 30.61 0.31 -27.26 15 8 H 0.12 3.33 8.06 -52.49 -0.42 2.90 15 9 S 2.68 64.63 4.25 -107.50 -0.46 64.18 15 10 O -1.00 -25.89 14.69 -57.17 -0.84 -26.73 15 11 O -1.00 -25.75 15.57 -57.17 -0.89 -26.64 15 12 N -1.01 -18.64 3.29 -114.75 -0.38 -19.02 15 13 C 0.14 2.19 6.74 -5.03 -0.03 2.16 15 14 C -0.06 -0.78 9.52 -36.35 -0.35 -1.13 15 15 C -0.16 -2.18 5.81 -103.31 -0.60 -2.78 15 16 C 0.52 6.77 8.21 34.26 0.28 7.05 15 17 O -0.53 -8.03 16.73 -19.29 -0.32 -8.35 15 18 O -0.51 -5.07 12.67 -40.75 -0.52 -5.59 15 19 C -0.09 -1.22 5.63 -28.19 -0.16 -1.38 15 20 C 0.12 1.91 6.46 -3.57 -0.02 1.89 15 21 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.12 1.83 6.98 -51.93 -0.36 1.47 15 24 H 0.14 1.67 7.16 -52.49 -0.38 1.29 15 25 H 0.41 2.13 9.11 45.56 0.42 2.55 15 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 27 H 0.09 0.98 7.84 -51.93 -0.41 0.57 15 28 H 0.10 1.64 7.12 -51.93 -0.37 1.27 15 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 LS Contribution 264.64 15.07 3.99 3.99 Total: -1.00 -33.95 264.64 -5.83 -39.77 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.01 Total: 2.52 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -0.66 Total: -17.24 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.40 Total: -41.58 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -2.57 Total: -67.31 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.51 Total: 15.67 kcal Atomic # 16 Polarization: 64.63 SS G_CDS: -0.46 Total: 64.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.95 -5.83 -39.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403636096.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.226 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds