Wall clock time and date at job start Mon Mar 30 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48499 * 109.47115 * 269.99966 * 3 2 1 5 5 H 1.48499 * 109.46873 * 30.00267 * 3 2 1 6 6 H 1.48503 * 109.46912 * 150.00004 * 3 2 1 7 7 C 1.37890 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99621 * 0.02562 * 7 2 1 9 9 S 1.76197 * 119.99931 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40040 * 66.45724 * 9 7 2 11 11 O 1.42099 * 106.40125 * 293.54164 * 9 7 2 12 12 N 1.65596 * 107.21806 * 180.02562 * 9 7 2 13 13 C 1.47104 * 121.47222 * 270.23911 * 12 9 7 14 14 C 1.50352 * 109.09163 * 223.52113 * 13 12 9 15 15 C 1.31661 * 123.35971 * 348.48628 * 14 13 12 16 16 C 1.46946 * 117.84516 * 181.06826 * 15 14 13 17 17 O 1.21530 * 120.00060 * 0.02562 * 16 15 14 18 18 O 1.34796 * 120.00023 * 180.02562 * 16 15 14 19 19 C 1.49989 * 124.30660 * 1.05104 * 15 14 13 20 20 C 1.47298 * 121.32644 * 89.99987 * 12 9 7 21 21 H 0.96997 * 119.99837 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.70863 * 103.54069 * 13 12 9 23 23 H 1.09000 * 109.39682 * 343.30969 * 13 12 9 24 24 H 1.08002 * 118.32280 * 168.77845 * 14 13 12 25 25 H 0.96704 * 117.00171 * 180.02562 * 18 16 15 26 26 H 1.09003 * 109.31787 * 101.32298 * 19 15 14 27 27 H 1.09006 * 109.31187 * 220.74089 * 19 15 14 28 28 H 1.09006 * 109.75866 * 357.97809 * 20 12 9 29 29 H 1.08997 * 109.80186 * 237.24946 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7665 -1.1943 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1673 -0.6495 -1.2510 12 7 4.2566 -2.7760 -0.0025 13 6 4.4794 -3.5120 1.2516 14 6 5.7505 -4.3068 1.1362 15 6 6.3916 -4.4862 0.0003 16 6 7.6113 -5.3055 0.0225 17 8 7.9973 -5.7923 1.0670 18 8 8.3020 -5.5169 -1.1156 19 6 5.9586 -3.9098 -1.3150 20 6 4.4828 -3.5067 -1.2613 21 1 -0.4850 0.8400 0.0004 22 1 3.6434 -4.1866 1.4354 23 1 4.5659 -2.8044 2.0762 24 1 6.1560 -4.7574 2.0300 25 1 9.0977 -6.0628 -1.0513 26 1 6.5641 -3.0320 -1.5409 27 1 6.1008 -4.6537 -2.0990 28 1 4.2454 -2.8633 -2.1086 29 1 3.8560 -4.3980 -1.2886 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403636096.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:38 Heat of formation + Delta-G solvation = -178.389277 kcal Electronic energy + Delta-G solvation = -17965.649238 eV Core-core repulsion = 14786.922216 eV Total energy + Delta-G solvation = -3178.727021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37500 -39.11451 -37.76416 -37.09648 -36.50198 -35.18388 -33.78630 -32.11661 -28.54321 -27.01205 -24.90497 -23.26269 -20.97044 -19.94970 -19.25304 -18.83170 -18.60036 -17.44930 -17.00875 -16.72803 -16.68401 -15.81229 -15.49719 -15.26238 -14.93675 -14.74705 -14.54144 -13.76131 -13.64498 -13.51465 -13.34292 -12.98769 -12.72841 -12.59799 -12.58198 -12.42973 -12.13484 -11.80443 -11.50426 -11.33221 -11.19375 -10.25903 -9.91339 -8.96456 -7.52333 0.03231 0.11296 1.05662 1.14660 1.21847 1.88095 1.89195 2.10053 2.40825 2.43124 3.37580 3.68745 3.77885 3.92945 4.13678 4.18517 4.45124 4.49863 4.61149 4.66296 4.81517 4.87864 5.12210 5.32850 5.40215 5.48729 5.59233 5.74894 6.02848 6.54279 6.98222 8.21139 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.046767 B = 0.006030 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.569957 B = 4642.471347 C = 4701.680301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.109 3.891 3 Si 0.822 3.178 4 H -0.239 1.239 5 H -0.221 1.221 6 H -0.228 1.228 7 C -1.038 5.038 8 H 0.108 0.892 9 S 2.699 3.301 10 O -1.024 7.024 11 O -1.022 7.022 12 N -1.006 6.006 13 C 0.135 3.865 14 C -0.056 4.056 15 C -0.165 4.165 16 C 0.528 3.472 17 O -0.552 6.552 18 O -0.502 6.502 19 C -0.086 4.086 20 C 0.113 3.887 21 H 0.291 0.709 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.150 0.850 25 H 0.431 0.569 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -10.059 -1.799 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.108 4.108 3 Si 0.639 3.361 4 H -0.162 1.162 5 H -0.143 1.143 6 H -0.150 1.150 7 C -1.170 5.170 8 H 0.126 0.874 9 S 2.801 3.199 10 O -1.014 7.014 11 O -1.013 7.013 12 N -0.845 5.845 13 C 0.011 3.989 14 C -0.076 4.076 15 C -0.167 4.167 16 C 0.375 3.625 17 O -0.446 6.446 18 O -0.315 6.315 19 C -0.124 4.124 20 C -0.011 4.011 21 H 0.102 0.898 22 H 0.134 0.866 23 H 0.128 0.872 24 H 0.168 0.832 25 H 0.292 0.708 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.110 0.890 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.409 -9.111 -1.572 14.685 hybrid contribution -0.225 0.073 0.129 0.269 sum 11.185 -9.039 -1.443 14.452 Atomic orbital electron populations 1.70011 1.07462 1.30476 1.40428 1.25163 0.95593 1.01415 0.88646 0.87533 0.82956 0.82958 0.82653 1.16192 1.14309 1.15029 1.31074 1.18081 1.01648 1.66213 0.87398 1.00548 0.75652 0.71349 0.72374 1.93417 1.85016 1.77054 1.45955 1.93368 1.84986 1.76981 1.45923 1.57635 1.84073 1.30164 1.12657 1.20663 0.95863 0.96175 0.86170 1.23458 0.93689 0.92308 0.98097 1.20009 0.95297 1.03357 0.98023 1.21162 0.83396 0.77239 0.80734 1.90879 1.69592 1.50509 1.33579 1.84588 1.42602 1.68617 1.35710 1.20639 0.95708 1.01776 0.94298 1.21694 0.96516 0.97953 0.84971 0.89838 0.86597 0.87246 0.83237 0.70783 0.90591 0.86474 0.89025 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.75 13.96 21.45 0.30 -48.45 15 2 C 0.11 6.14 5.47 84.66 0.46 6.60 15 3 Si 0.82 40.38 26.54 68.60 1.82 42.20 15 4 H -0.24 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.22 -9.59 7.11 99.48 0.71 -8.89 15 6 H -0.23 -11.47 5.61 99.48 0.56 -10.92 15 7 C -1.04 -56.86 10.29 67.74 0.70 -56.16 15 8 H 0.11 6.02 8.06 -2.91 -0.02 5.99 15 9 S 2.70 129.56 4.25 -56.49 -0.24 129.32 15 10 O -1.02 -52.54 14.69 -128.00 -1.88 -54.42 15 11 O -1.02 -52.09 15.57 -128.00 -1.99 -54.09 15 12 N -1.01 -36.13 3.29 -516.94 -1.70 -37.83 15 13 C 0.14 3.93 6.74 85.41 0.58 4.50 15 14 C -0.06 -1.40 9.52 24.92 0.24 -1.16 15 15 C -0.17 -4.12 5.81 -18.46 -0.11 -4.23 15 16 C 0.53 12.32 8.21 70.10 0.58 12.89 15 17 O -0.55 -15.59 16.73 19.74 0.33 -15.26 15 18 O -0.50 -8.29 12.67 -57.08 -0.72 -9.01 15 19 C -0.09 -2.08 5.63 29.65 0.17 -1.92 15 20 C 0.11 3.29 6.46 86.25 0.56 3.84 15 21 H 0.29 14.98 8.31 -92.71 -0.77 14.21 15 22 H 0.12 2.78 8.14 -2.39 -0.02 2.76 15 23 H 0.11 3.35 6.98 -2.39 -0.02 3.33 15 24 H 0.15 3.36 7.16 -2.91 -0.02 3.34 15 25 H 0.43 3.01 9.11 -74.05 -0.67 2.34 15 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.12 2.17 7.84 -2.38 -0.02 2.15 15 28 H 0.09 2.85 7.12 -2.38 -0.02 2.83 15 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 Total: -1.00 -71.90 264.64 -0.55 -72.45 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.37 Total: 10.71 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.16 Total: -35.62 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.40 Total: -86.29 kcal Atomic # 8 Polarization: -128.52 SS G_CDS: -4.27 Total: -132.78 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.82 Total: 42.20 kcal Atomic # 16 Polarization: 129.56 SS G_CDS: -0.24 Total: 129.32 kcal Total: -71.90 -0.55 -72.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403636096.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.935 kcal (2) G-P(sol) polarization free energy of solvation -71.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds