Wall clock time and date at job start Mon Mar 30 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38747 * 120.26823 * 2 1 4 4 N 1.31395 * 121.07441 * 179.97438 * 3 2 1 5 5 C 1.32914 * 121.68508 * 0.02562 * 4 3 2 6 6 C 1.47676 * 119.79453 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00342 * 173.48139 * 6 5 4 8 8 N 1.34780 * 120.00119 * 353.48564 * 6 5 4 9 9 C 1.36812 * 120.00455 * 181.92915 * 8 6 5 10 10 H 1.08009 * 119.99940 * 20.37819 * 9 8 6 11 11 C 1.39074 * 120.00360 * 200.38098 * 9 8 6 12 12 N 1.31347 * 119.99831 * 21.53833 * 11 9 8 13 13 Si 1.86796 * 120.00416 * 201.54183 * 11 9 8 14 14 H 1.48502 * 109.47193 * 89.99594 * 13 11 9 15 15 H 1.48501 * 109.47484 * 210.00371 * 13 11 9 16 16 H 1.48506 * 109.46799 * 329.99761 * 13 11 9 17 17 C 1.46500 * 119.99654 * 1.92091 * 8 6 5 18 18 C 1.47208 * 109.46917 * 82.51929 * 17 8 6 19 19 N 5.22564 * 129.88162 * 32.50803 * 2 1 3 20 20 C 1.39983 * 120.41826 * 0.02562 * 5 4 3 21 21 O 1.35655 * 120.54676 * 179.97438 * 20 5 4 22 22 C 1.38344 * 120.27088 * 179.72307 * 2 1 3 23 23 H 1.08997 * 109.47153 * 90.00183 * 1 2 3 24 24 H 1.09005 * 109.46988 * 210.00064 * 1 2 3 25 25 H 1.08998 * 109.47305 * 329.99902 * 1 2 3 26 26 H 1.07998 * 119.46981 * 359.97438 * 3 2 1 27 27 H 0.97003 * 119.99896 * 179.97438 * 12 11 9 28 28 H 1.08998 * 109.47144 * 202.51905 * 17 8 6 29 29 H 1.09000 * 109.47273 * 322.52217 * 17 8 6 30 30 H 0.96693 * 113.99634 * 90.00067 * 21 20 5 31 31 H 1.08002 * 120.77569 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1983 0.0000 4 7 3.5202 1.2168 0.0005 5 6 4.2342 0.0957 0.0005 6 6 5.7093 0.1652 0.0005 7 8 6.3659 -0.8513 0.1201 8 7 6.3279 1.3553 -0.1319 9 6 7.6941 1.4155 -0.1716 10 1 8.2663 0.5356 -0.4265 11 6 8.3463 2.6097 0.1163 12 7 7.7370 3.5381 0.8177 13 14 10.0886 2.8933 -0.4945 14 1 10.0456 3.5285 -1.8361 15 1 10.8063 3.7843 0.4523 16 1 10.7992 1.5925 -0.5852 17 6 5.5373 2.5844 -0.2336 18 6 5.1541 3.0342 1.1147 19 7 4.8577 3.3817 2.1550 20 6 3.5967 -1.1505 -0.0005 21 8 4.3228 -2.2964 -0.0010 22 6 2.2044 -1.1948 0.0058 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6621 2.1311 -0.0004 27 1 8.1919 4.3709 1.0189 28 1 6.1304 3.3588 -0.7200 29 1 4.6396 2.3915 -0.8210 30 1 4.5330 -2.6291 0.8822 31 1 1.6816 -2.1398 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427098962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:25 Heat of formation + Delta-G solvation = 13.643114 kcal Electronic energy + Delta-G solvation = -19404.096837 eV Core-core repulsion = 16266.378860 eV Total energy + Delta-G solvation = -3137.717978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44359 -38.19542 -37.00913 -35.46955 -34.16361 -33.57340 -31.76123 -30.25340 -27.86356 -27.18470 -24.90843 -23.39626 -22.23245 -20.05458 -17.85867 -17.70270 -17.21764 -16.48474 -16.07740 -15.21003 -14.94323 -14.41936 -14.14732 -13.85361 -13.39861 -13.32958 -12.97408 -12.70274 -12.52308 -12.37025 -12.07840 -11.87915 -11.45783 -11.20673 -11.15801 -10.90364 -10.43840 -10.43175 -10.26119 -9.44827 -9.29512 -9.08631 -8.45694 -8.41794 -7.99761 -6.57833 -4.00930 0.97818 1.36820 3.08111 3.19515 3.24268 3.44537 3.80809 4.08769 4.18297 4.34178 4.40267 4.62148 4.83450 4.87503 4.94904 5.04282 5.20341 5.39763 5.49415 5.58616 5.69513 5.82640 5.92430 6.23113 6.25205 6.50938 6.61841 6.86261 7.38381 7.86728 7.92017 8.10737 8.29283 8.95747 9.02017 9.14129 9.76417 10.45413 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.006933 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.256822 B = 4037.667705 C = 4772.725459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C 0.086 3.914 4 N -0.446 5.446 5 C 0.076 3.924 6 C 0.483 3.517 7 O -0.564 6.564 8 N -0.408 5.408 9 C -0.308 4.308 10 H 0.112 0.888 11 C 0.034 3.966 12 N -0.856 5.856 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.266 1.266 17 C 0.214 3.786 18 C 0.274 3.726 19 N -0.492 5.492 20 C 0.107 3.893 21 O -0.470 6.470 22 C -0.114 4.114 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.156 0.844 27 H 0.277 0.723 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.392 0.608 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -3.476 -4.115 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.074 4.074 4 N -0.159 5.159 5 C -0.062 4.062 6 C 0.272 3.728 7 O -0.447 6.447 8 N -0.125 5.125 9 C -0.436 4.436 10 H 0.130 0.870 11 C -0.173 4.173 12 N -0.493 5.493 13 Si 0.757 3.243 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.191 1.191 17 C 0.087 3.913 18 C -0.044 4.044 19 N -0.172 5.172 20 C 0.058 3.942 21 O -0.280 6.280 22 C -0.140 4.140 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.174 0.826 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.250 0.750 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.233 -2.457 -3.048 11.896 hybrid contribution 0.529 -0.588 0.029 0.791 sum -10.704 -3.045 -3.020 11.531 Atomic orbital electron populations 1.20705 0.90290 1.02965 1.02453 1.20880 0.97335 0.93531 1.01287 1.22787 0.90155 0.97415 0.96995 1.68267 1.07637 1.28938 1.11064 1.22276 0.96202 0.88599 0.99151 1.17404 0.84419 0.84968 0.86030 1.90654 1.64638 1.33889 1.55529 1.43557 1.06327 1.03608 1.59051 1.19869 0.80178 0.98621 1.44933 0.87032 1.25450 1.00757 0.96070 0.94988 1.69908 1.39483 1.08155 1.31710 0.85837 0.81038 0.78803 0.78616 1.19872 1.20899 1.19051 1.19212 0.96305 0.88557 0.87184 1.28913 0.88952 0.91723 0.94816 1.80834 1.14297 1.10349 1.11765 1.19319 0.89408 0.86684 0.98825 1.84718 1.72933 1.37010 1.33293 1.21749 0.93030 0.98817 1.00406 0.90933 0.91541 0.91130 0.82636 0.91267 0.87273 0.86351 0.75028 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.03 36.01 0.36 -0.54 16 2 C -0.13 -1.60 5.90 -104.39 -0.62 -2.22 16 3 C 0.09 1.24 10.85 -17.55 -0.19 1.05 16 4 N -0.45 -8.21 4.90 -9.72 -0.05 -8.26 16 5 C 0.08 1.56 6.61 -82.89 -0.55 1.01 16 6 C 0.48 11.91 7.51 -12.40 -0.09 11.82 16 7 O -0.56 -15.23 14.85 -16.58 -0.25 -15.47 16 8 N -0.41 -10.19 2.60 -119.07 -0.31 -10.50 16 9 C -0.31 -8.11 9.25 -15.02 -0.14 -8.25 16 10 H 0.11 3.05 7.44 -52.48 -0.39 2.66 16 11 C 0.03 0.85 4.83 -17.45 -0.08 0.76 16 12 N -0.86 -21.97 9.67 55.50 0.54 -21.43 16 13 Si 0.93 19.48 29.60 -169.99 -5.03 14.45 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 17 C 0.21 4.71 4.75 -6.83 -0.03 4.68 16 18 C 0.27 6.51 12.09 -20.75 -0.25 6.26 16 19 N -0.49 -12.39 18.54 42.16 0.78 -11.60 16 20 C 0.11 1.89 6.74 -38.53 -0.26 1.63 16 21 O -0.47 -8.31 11.60 -40.52 -0.47 -8.78 16 22 C -0.11 -1.57 9.80 -39.15 -0.38 -1.95 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.11 2.40 6.54 -51.93 -0.34 2.06 16 29 H 0.12 2.29 5.35 -51.94 -0.28 2.02 16 30 H 0.39 5.52 9.06 45.56 0.41 5.94 16 31 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -32.52 278.59 -4.66 -37.19 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -1.84 Total: 5.95 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -2.24 Total: 14.25 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.96 Total: -51.79 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.72 Total: -24.25 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.52 -4.66 -37.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427098962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.830 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds