Wall clock time and date at job start Mon Mar 30 2020 04:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99854 * 0.02562 * 7 2 1 10 10 O 1.42093 * 103.00227 * 293.85039 * 9 7 2 11 11 C 1.81401 * 102.99951 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.46901 * 179.97438 * 11 9 7 13 13 O 1.21275 * 120.00169 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99693 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99979 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47141 * 179.97438 * 15 14 12 17 17 H 1.09007 * 110.27029 * 59.29891 * 16 15 14 18 18 C 1.54941 * 110.30853 * 181.38761 * 16 15 14 19 19 C 1.55419 * 100.89329 * 155.29142 * 18 16 15 20 20 C 1.54380 * 102.30414 * 325.99034 * 19 18 16 21 21 O 1.43234 * 107.59509 * 21.28761 * 20 19 18 22 22 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47262 * 300.00056 * 11 9 7 24 24 H 1.08997 * 109.47148 * 60.00009 * 11 9 7 25 25 H 0.97003 * 120.00274 * 0.02562 * 14 12 11 26 26 H 1.09000 * 109.46483 * 299.99994 * 15 14 12 27 27 H 1.08997 * 109.47172 * 59.99829 * 15 14 12 28 28 H 1.09005 * 111.12647 * 273.28170 * 18 16 15 29 29 H 1.08995 * 111.12854 * 37.43892 * 18 16 15 30 30 H 1.08999 * 110.88152 * 207.75912 * 19 18 16 31 31 H 1.08996 * 110.93615 * 84.25264 * 19 18 16 32 32 H 1.09002 * 109.83315 * 261.77014 * 20 19 18 33 33 H 1.09009 * 109.82798 * 140.80411 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1236 -2.7199 0.0005 10 8 0.4784 -2.7166 1.2666 11 6 2.4503 -3.9570 0.0005 12 6 1.8487 -5.3388 0.0012 13 8 0.6437 -5.4755 0.0011 14 7 2.6499 -6.4226 0.0018 15 6 2.0651 -7.7658 0.0019 16 6 3.1841 -8.8092 0.0020 17 1 3.8163 -8.6849 0.8812 18 6 2.5868 -10.2384 -0.0332 19 6 3.7632 -11.0330 -0.6658 20 6 4.3726 -10.0001 -1.6380 21 8 3.9689 -8.6988 -1.1961 22 1 -0.4850 -0.8401 0.0004 23 1 3.0665 -3.8290 -0.8895 24 1 3.0665 -3.8290 0.8905 25 1 3.6137 -6.3132 0.0022 26 1 1.4486 -7.8935 0.8916 27 1 1.4494 -7.8941 -0.8883 28 1 2.3648 -10.5963 0.9723 29 1 1.7008 -10.2785 -0.6668 30 1 3.3964 -11.9054 -1.2066 31 1 4.4882 -11.3259 0.0935 32 1 4.0023 -10.1791 -2.6475 33 1 5.4600 -10.0750 -1.6231 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:43 Heat of formation + Delta-G solvation = -140.322445 kcal Electronic energy + Delta-G solvation = -17223.514145 eV Core-core repulsion = 14182.270920 eV Total energy + Delta-G solvation = -3041.243225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95805 -38.85260 -34.59437 -33.86215 -32.79723 -32.51657 -30.84812 -28.79024 -25.43375 -24.97130 -22.10566 -21.54291 -20.23796 -18.68595 -17.32024 -16.78918 -16.19802 -15.82151 -15.42505 -15.15442 -14.72503 -14.04884 -13.92523 -13.71826 -13.25078 -13.07332 -12.92142 -12.59208 -12.14596 -12.00668 -11.68502 -11.59662 -11.50347 -11.21183 -11.06990 -10.69049 -10.21481 -10.03012 -9.83091 -9.51233 -8.96163 -8.87131 -8.27102 -6.93946 -6.66020 -4.81680 3.07392 3.09607 3.30121 3.33583 3.43970 3.53769 3.75360 4.08204 4.24734 4.40898 4.50169 4.77458 4.84008 4.93662 4.97953 5.09696 5.27496 5.31219 5.40254 5.42890 5.52873 5.61033 5.63836 5.73432 5.87532 6.20533 6.23616 6.58550 6.73551 7.73397 7.85649 8.32296 8.58304 8.99693 10.50920 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.053814 B = 0.003745 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.183571 B = 7475.536691 C = 7837.375275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.076 3.924 3 Si 1.072 2.928 4 H -0.278 1.278 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.906 4.906 8 H 0.075 0.925 9 S 1.349 4.651 10 O -0.904 6.904 11 C -0.499 4.499 12 C 0.544 3.456 13 O -0.538 6.538 14 N -0.731 5.731 15 C 0.121 3.879 16 C 0.068 3.932 17 H 0.077 0.923 18 C -0.148 4.148 19 C -0.156 4.156 20 C 0.050 3.950 21 O -0.375 6.375 22 H 0.277 0.723 23 H 0.125 0.875 24 H 0.097 0.903 25 H 0.402 0.598 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 -19.947 -5.327 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.139 4.139 3 Si 0.897 3.103 4 H -0.203 1.203 5 H -0.200 1.200 6 H -0.210 1.210 7 C -1.047 5.047 8 H 0.093 0.907 9 S 1.545 4.455 10 O -0.898 6.898 11 C -0.630 4.630 12 C 0.332 3.668 13 O -0.415 6.415 14 N -0.385 5.385 15 C -0.003 4.003 16 C 0.010 3.990 17 H 0.095 0.905 18 C -0.187 4.187 19 C -0.193 4.193 20 C -0.026 4.026 21 O -0.295 6.295 22 H 0.089 0.911 23 H 0.143 0.857 24 H 0.116 0.884 25 H 0.236 0.764 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.027 -18.485 -5.397 20.499 hybrid contribution 2.462 -1.576 1.940 3.508 sum 9.489 -20.061 -3.458 22.460 Atomic orbital electron populations 1.70838 1.07134 1.31607 1.39692 1.25817 0.95558 1.03170 0.89387 0.83539 0.75287 0.74275 0.77183 1.20332 1.19999 1.21001 1.28585 1.03730 1.07753 1.64618 0.90689 1.69757 0.83964 0.84068 1.07674 1.92831 1.64629 1.85735 1.46631 1.28378 1.20982 1.06567 1.07106 1.20117 0.86702 0.85630 0.74392 1.90689 1.14537 1.87007 1.49270 1.45968 1.10348 1.05142 1.77035 1.21480 0.94618 0.81206 1.03021 1.23266 0.92169 0.94770 0.88752 0.90498 1.23264 0.98893 0.93801 1.02696 1.23137 0.97865 0.99031 0.99298 1.23126 0.99248 0.82288 0.97983 1.88473 1.71051 1.27513 1.42459 0.91053 0.85653 0.88449 0.76362 0.90397 0.90767 0.89456 0.89669 0.89847 0.90490 0.91189 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.24 13.65 55.43 0.76 -25.48 16 2 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 3 Si 1.07 24.60 29.90 -169.99 -5.08 19.51 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.91 -25.51 9.38 30.60 0.29 -25.22 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 S 1.35 34.83 11.36 -107.50 -1.22 33.61 16 10 O -0.90 -29.13 17.36 -35.23 -0.61 -29.74 16 11 C -0.50 -10.17 6.37 36.01 0.23 -9.94 16 12 C 0.54 10.73 7.85 -10.98 -0.09 10.64 16 13 O -0.54 -12.42 15.86 5.56 0.09 -12.33 16 14 N -0.73 -11.03 5.49 -60.29 -0.33 -11.36 16 15 C 0.12 1.53 5.40 -4.04 -0.02 1.51 16 16 C 0.07 0.66 3.49 -25.71 -0.09 0.57 16 17 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.15 -1.05 6.58 -24.42 -0.16 -1.21 16 19 C -0.16 -0.93 7.02 -24.72 -0.17 -1.10 16 20 C 0.05 0.39 7.80 37.88 0.30 0.68 16 21 O -0.38 -4.11 10.95 -35.23 -0.39 -4.50 16 22 H 0.28 8.51 6.71 -40.82 -0.27 8.23 16 23 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 24 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 25 H 0.40 5.19 8.45 -40.82 -0.34 4.85 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.60 8.06 -51.93 -0.42 0.19 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -38.70 297.69 -6.59 -45.29 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.47 Total: 2.50 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 0.18 Total: -21.99 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.43 Total: -36.84 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.91 Total: -46.57 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Atomic # 16 Polarization: 34.83 SS G_CDS: -1.22 Total: 33.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -38.70 -6.59 -45.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.029 kcal (2) G-P(sol) polarization free energy of solvation -38.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds