Wall clock time and date at job start Mon Mar 30 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99854 * 0.02562 * 7 2 1 10 10 O 1.42093 * 103.00227 * 293.85039 * 9 7 2 11 11 C 1.81401 * 102.99951 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.46901 * 179.97438 * 11 9 7 13 13 O 1.21275 * 120.00169 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99693 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99979 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47141 * 179.97438 * 15 14 12 17 17 H 1.09007 * 110.27029 * 59.29891 * 16 15 14 18 18 C 1.54941 * 110.30853 * 181.38761 * 16 15 14 19 19 C 1.55419 * 100.89329 * 155.29142 * 18 16 15 20 20 C 1.54380 * 102.30414 * 325.99034 * 19 18 16 21 21 O 1.43234 * 107.59509 * 21.28761 * 20 19 18 22 22 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47262 * 300.00056 * 11 9 7 24 24 H 1.08997 * 109.47148 * 60.00009 * 11 9 7 25 25 H 0.97003 * 120.00274 * 0.02562 * 14 12 11 26 26 H 1.09000 * 109.46483 * 299.99994 * 15 14 12 27 27 H 1.08997 * 109.47172 * 59.99829 * 15 14 12 28 28 H 1.09005 * 111.12647 * 273.28170 * 18 16 15 29 29 H 1.08995 * 111.12854 * 37.43892 * 18 16 15 30 30 H 1.08999 * 110.88152 * 207.75912 * 19 18 16 31 31 H 1.08996 * 110.93615 * 84.25264 * 19 18 16 32 32 H 1.09002 * 109.83315 * 261.77014 * 20 19 18 33 33 H 1.09009 * 109.82798 * 140.80411 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1236 -2.7199 0.0005 10 8 0.4784 -2.7166 1.2666 11 6 2.4503 -3.9570 0.0005 12 6 1.8487 -5.3388 0.0012 13 8 0.6437 -5.4755 0.0011 14 7 2.6499 -6.4226 0.0018 15 6 2.0651 -7.7658 0.0019 16 6 3.1841 -8.8092 0.0020 17 1 3.8163 -8.6849 0.8812 18 6 2.5868 -10.2384 -0.0332 19 6 3.7632 -11.0330 -0.6658 20 6 4.3726 -10.0001 -1.6380 21 8 3.9689 -8.6988 -1.1961 22 1 -0.4850 -0.8401 0.0004 23 1 3.0665 -3.8290 -0.8895 24 1 3.0665 -3.8290 0.8905 25 1 3.6137 -6.3132 0.0022 26 1 1.4486 -7.8935 0.8916 27 1 1.4494 -7.8941 -0.8883 28 1 2.3648 -10.5963 0.9723 29 1 1.7008 -10.2785 -0.6668 30 1 3.3964 -11.9054 -1.2066 31 1 4.4882 -11.3259 0.0935 32 1 4.0023 -10.1791 -2.6475 33 1 5.4600 -10.0750 -1.6231 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:42 Heat of formation + Delta-G solvation = -172.606097 kcal Electronic energy + Delta-G solvation = -17224.914069 eV Core-core repulsion = 14182.270920 eV Total energy + Delta-G solvation = -3042.643149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96330 -40.10068 -36.14816 -35.90598 -34.99411 -33.16218 -32.02592 -30.11423 -27.34405 -26.20429 -22.73159 -22.35034 -21.68435 -20.75274 -18.24792 -18.06046 -17.84297 -17.09937 -16.64420 -16.57753 -15.89169 -15.84705 -15.53582 -15.17366 -14.71117 -14.40050 -14.18172 -13.76311 -13.68169 -13.49314 -12.94293 -12.69776 -12.65430 -12.37152 -12.19862 -12.11178 -11.95181 -11.73006 -11.14740 -11.04181 -10.52859 -10.41226 -10.21080 -9.18130 -8.80456 -7.08002 1.26287 1.50195 1.50785 1.57535 1.78440 2.18574 2.36303 2.77389 2.82474 3.10571 3.49163 3.67086 3.72083 3.91062 3.96217 4.10633 4.19071 4.35265 4.39019 4.55446 4.58507 4.63832 4.83384 4.90575 4.96896 5.01806 5.23298 5.33411 5.61860 6.02436 6.03144 6.38490 6.83584 7.11008 8.25131 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.053814 B = 0.003745 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.183571 B = 7475.536691 C = 7837.375275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.022 3.978 3 Si 1.117 2.883 4 H -0.240 1.240 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.922 4.922 8 H 0.086 0.914 9 S 1.354 4.646 10 O -0.978 6.978 11 C -0.481 4.481 12 C 0.540 3.460 13 O -0.579 6.579 14 N -0.710 5.710 15 C 0.116 3.884 16 C 0.072 3.928 17 H 0.087 0.913 18 C -0.147 4.147 19 C -0.147 4.147 20 C 0.041 3.959 21 O -0.401 6.401 22 H 0.263 0.737 23 H 0.168 0.832 24 H 0.100 0.900 25 H 0.416 0.584 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -21.165 -5.977 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.186 4.186 3 Si 0.934 3.066 4 H -0.164 1.164 5 H -0.199 1.199 6 H -0.203 1.203 7 C -1.063 5.063 8 H 0.104 0.896 9 S 1.556 4.444 10 O -0.972 6.972 11 C -0.618 4.618 12 C 0.326 3.674 13 O -0.460 6.460 14 N -0.363 5.363 15 C -0.008 4.008 16 C 0.015 3.985 17 H 0.105 0.895 18 C -0.185 4.185 19 C -0.185 4.185 20 C -0.035 4.035 21 O -0.321 6.321 22 H 0.074 0.926 23 H 0.185 0.815 24 H 0.119 0.881 25 H 0.252 0.748 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.544 -19.726 -6.061 22.736 hybrid contribution 1.807 -1.394 2.096 3.099 sum 11.351 -21.120 -3.964 24.303 Atomic orbital electron populations 1.70950 1.08332 1.30845 1.42043 1.27511 0.95616 1.07442 0.88078 0.83034 0.74625 0.69976 0.78933 1.16383 1.19856 1.20349 1.28913 1.04436 1.08839 1.64120 0.89574 1.68740 0.85304 0.84255 1.06091 1.92745 1.68189 1.87214 1.49061 1.27965 1.18911 1.05465 1.09444 1.19968 0.86385 0.86341 0.74665 1.90688 1.16215 1.87477 1.51598 1.45796 1.10713 1.05092 1.74660 1.21691 0.95967 0.80486 1.02637 1.23250 0.91386 0.95014 0.88900 0.89485 1.23292 0.99200 0.92220 1.03778 1.23132 0.97371 0.98806 0.99159 1.23332 1.00021 0.81593 0.98573 1.88435 1.71237 1.29579 1.42884 0.92567 0.81469 0.88099 0.74777 0.90554 0.91472 0.87933 0.89888 0.88253 0.89349 0.90926 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.37 13.65 21.45 0.29 -55.07 16 2 C 0.02 1.24 5.46 84.65 0.46 1.70 16 3 Si 1.12 48.32 29.90 68.60 2.05 50.37 16 4 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.92 -51.74 9.38 67.73 0.64 -51.10 16 8 H 0.09 4.49 7.81 -2.91 -0.02 4.46 16 9 S 1.35 71.08 11.36 -56.49 -0.64 70.44 16 10 O -0.98 -65.27 17.36 -148.98 -2.59 -67.86 16 11 C -0.48 -18.96 6.37 71.24 0.45 -18.50 16 12 C 0.54 20.85 7.85 87.66 0.69 21.54 16 13 O -0.58 -27.07 15.86 -3.01 -0.05 -27.12 16 14 N -0.71 -20.25 5.49 -463.06 -2.54 -22.79 16 15 C 0.12 2.79 5.40 86.38 0.47 3.26 16 16 C 0.07 1.24 3.49 31.26 0.11 1.35 16 17 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 18 C -0.15 -1.72 6.58 32.09 0.21 -1.51 16 19 C -0.15 -1.30 7.02 31.89 0.22 -1.08 16 20 C 0.04 0.53 7.80 72.45 0.56 1.10 16 21 O -0.40 -7.94 10.95 -148.98 -1.63 -9.58 16 22 H 0.26 16.82 6.71 -92.71 -0.62 16.20 16 23 H 0.17 5.14 8.14 -2.39 -0.02 5.12 16 24 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 25 H 0.42 9.69 8.45 -92.71 -0.78 8.90 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -85.88 297.69 -0.81 -86.69 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.48 Total: 18.16 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 3.82 Total: -43.24 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.25 Total: -77.86 kcal Atomic # 8 Polarization: -100.29 SS G_CDS: -4.26 Total: -104.55 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Atomic # 16 Polarization: 71.08 SS G_CDS: -0.64 Total: 70.44 kcal Total: -85.88 -0.81 -86.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.914 kcal (2) G-P(sol) polarization free energy of solvation -85.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds