Wall clock time and date at job start Mon Mar 30 2020 04:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.46823 * 2 1 4 4 C 1.46897 * 111.00142 * 287.97779 * 3 2 1 5 5 C 1.50703 * 109.46878 * 160.36209 * 4 3 2 6 6 H 1.07998 * 120.00094 * 4.66762 * 5 4 3 7 7 C 1.37875 * 119.99909 * 184.67078 * 5 4 3 8 8 N 1.31511 * 120.00152 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00127 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47613 * 59.99412 * 9 7 5 11 11 H 1.48498 * 109.47269 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46867 * 299.99563 * 9 7 5 13 13 C 1.46900 * 110.99842 * 164.02734 * 3 2 1 14 14 C 1.50701 * 109.47248 * 293.95786 * 13 3 2 15 15 N 1.30213 * 121.08849 * 269.97628 * 14 13 3 16 16 S 1.69966 * 105.64957 * 180.02562 * 15 14 13 17 17 C 1.72308 * 94.53122 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 127.48503 * 180.02562 * 17 16 15 19 19 N 1.31044 * 105.02947 * 0.02562 * 17 16 15 20 20 H 1.09000 * 109.47169 * 299.35468 * 1 2 3 21 21 H 1.08999 * 109.47262 * 59.35811 * 1 2 3 22 22 H 1.09001 * 109.46917 * 179.36292 * 1 2 3 23 23 H 1.08998 * 109.47174 * 240.00332 * 2 1 3 24 24 H 1.09003 * 109.47455 * 120.00464 * 2 1 3 25 25 H 1.08997 * 109.47761 * 280.36165 * 4 3 2 26 26 H 1.09002 * 109.46667 * 40.36725 * 4 3 2 27 27 H 0.97008 * 120.00172 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47484 * 173.94986 * 13 3 2 29 29 H 1.09005 * 109.46832 * 53.95477 * 13 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7960 2.0225 -1.3044 5 6 1.8472 3.5203 -1.1469 6 1 2.1022 3.9544 -0.1914 7 6 1.5685 4.3366 -2.2225 8 7 1.2584 3.8080 -3.3861 9 14 1.6327 6.1932 -2.0275 10 1 2.9992 6.6005 -1.6126 11 1 1.2958 6.8389 -3.3216 12 1 0.6547 6.6164 -0.9932 13 6 3.4381 1.4419 0.3774 14 6 3.5943 1.0063 1.8116 15 7 3.5330 1.8676 2.7863 16 16 3.7566 0.9659 4.2096 17 6 3.9210 -0.5416 3.3913 18 17 4.1925 -2.1035 4.0987 19 7 3.7965 -0.2530 2.1191 20 1 -0.3633 0.5038 0.8957 21 1 -0.3634 0.5238 -0.8842 22 1 -0.3633 -1.0276 -0.0114 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.5704 1.7039 -2.0022 26 1 0.8184 1.7308 -1.6885 27 1 1.0627 4.3823 -4.1431 28 1 3.8032 2.4629 0.2659 29 1 4.0128 0.7780 -0.2685 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:10 Heat of formation + Delta-G solvation = 39.969085 kcal Electronic energy + Delta-G solvation = -15224.904424 eV Core-core repulsion = 12528.648047 eV Total energy + Delta-G solvation = -2696.256376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70509 -38.57627 -38.22881 -34.74659 -33.68850 -31.87084 -30.07290 -27.59550 -25.61659 -24.46527 -22.01598 -21.02130 -20.26072 -18.59391 -17.77844 -17.22294 -16.68618 -16.25700 -15.60448 -15.40284 -14.83172 -14.23099 -13.74976 -13.68918 -13.52047 -13.39824 -13.12089 -12.92322 -12.63544 -12.57895 -12.36711 -12.15972 -12.12671 -11.66694 -11.41437 -11.30373 -11.06342 -10.57465 -10.30450 -9.13704 -8.17637 -6.26679 -0.97633 -0.64412 0.25843 0.56229 1.15924 1.42694 1.45033 1.53092 2.42322 2.80553 3.14601 3.34274 3.95959 4.10499 4.18176 4.35175 4.55536 4.62773 4.72326 4.88379 4.98356 5.21362 5.24735 5.32153 5.67907 6.05607 6.17579 6.24359 6.54364 6.87040 7.42148 8.92519 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.005205 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.717916 B = 5378.446079 C = 5973.769726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 N -0.537 5.537 4 C 0.210 3.790 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.147 3.853 14 C 0.293 3.707 15 N -0.475 5.475 16 S 0.336 5.664 17 C 0.101 3.899 18 Cl 0.087 6.913 19 N -0.512 5.512 20 H 0.051 0.949 21 H 0.039 0.961 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.077 0.923 25 H -0.029 1.029 26 H 0.022 0.978 27 H 0.264 0.736 28 H 0.094 0.906 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 -10.869 16.022 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 N -0.263 5.263 4 C 0.084 3.916 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.014 3.986 14 C 0.004 3.996 15 N -0.307 5.307 16 S 0.472 5.528 17 C -0.211 4.211 18 Cl 0.114 6.886 19 N -0.237 5.237 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.097 0.903 23 H 0.044 0.956 24 H 0.095 0.905 25 H -0.011 1.011 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.253 -9.637 16.836 20.098 hybrid contribution 0.436 -0.360 -1.626 1.721 sum 5.688 -9.997 15.211 19.070 Atomic orbital electron populations 1.21690 0.94457 1.01724 1.01452 1.22175 0.96737 0.88823 1.00339 1.62047 1.14819 1.16721 1.32707 1.19450 0.94979 0.93677 0.83464 1.21413 1.46425 0.91853 0.96313 0.92301 1.25794 0.94877 1.03686 0.94778 1.70056 1.48304 1.37093 1.01756 0.85531 0.78917 0.79477 0.77261 1.19363 1.20769 1.19711 1.20470 0.91290 1.01979 0.84841 1.23141 0.94974 0.83033 0.98459 1.77580 1.25533 1.27680 0.99885 1.84729 1.60954 0.92551 1.14614 1.29268 1.00512 0.98151 0.93128 1.98465 1.93251 1.18367 1.78470 1.67107 1.20170 1.18948 1.17517 0.93017 0.94158 0.90260 0.95581 0.90489 1.01095 0.95994 0.92675 0.88757 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.99 71.98 0.72 -4.02 15 2 C 0.05 1.78 5.55 86.30 0.48 2.26 15 3 N -0.54 -23.68 4.37 -905.36 -3.96 -27.64 15 4 C 0.21 11.06 4.59 85.56 0.39 11.45 15 5 C -0.52 -29.59 8.61 25.60 0.22 -29.37 15 6 H 0.06 3.34 7.66 -2.91 -0.02 3.32 15 7 C 0.01 0.39 5.46 84.65 0.46 0.86 15 8 N -0.93 -55.59 13.29 21.45 0.28 -55.31 15 9 Si 0.96 44.67 29.54 68.60 2.03 46.70 15 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 13 C 0.15 5.85 5.32 85.56 0.46 6.31 15 14 C 0.29 10.19 6.35 139.40 0.89 11.08 15 15 N -0.48 -16.12 12.16 -60.72 -0.74 -16.86 15 16 S 0.34 7.81 23.81 -56.49 -1.35 6.47 15 17 C 0.10 2.42 8.50 130.36 1.11 3.53 15 18 Cl 0.09 1.48 29.33 -2.72 -0.08 1.40 15 19 N -0.51 -15.62 9.19 -192.68 -1.77 -17.39 15 20 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.04 1.58 6.52 -2.39 -0.02 1.56 15 22 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.03 0.98 8.05 -2.39 -0.02 0.97 15 24 H 0.08 2.70 5.88 -2.39 -0.01 2.68 15 25 H -0.03 -1.60 8.00 -2.39 -0.02 -1.62 15 26 H 0.02 1.24 6.24 -2.39 -0.01 1.23 15 27 H 0.26 14.90 8.31 -92.70 -0.77 14.13 15 28 H 0.09 4.05 7.32 -2.39 -0.02 4.03 15 29 H 0.06 2.36 8.12 -2.38 -0.02 2.34 15 Total: -1.00 -63.22 279.78 0.31 -62.91 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: 1.17 Total: -2.37 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.72 Total: 2.09 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.18 Total: -117.20 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.35 Total: 6.47 kcal Atomic # 17 Polarization: 1.48 SS G_CDS: -0.08 Total: 1.40 kcal Total: -63.22 0.31 -62.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.876 kcal (2) G-P(sol) polarization free energy of solvation -63.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds