Wall clock time and date at job start Mon Mar 30 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48508 * 109.46969 * 239.99724 * 3 2 1 5 5 H 1.48493 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46962 * 120.00171 * 3 2 1 7 7 C 1.37877 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99914 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00014 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40384 * 66.45660 * 9 7 2 11 11 O 1.42099 * 106.39738 * 293.53662 * 9 7 2 12 12 N 1.65593 * 107.21584 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00226 * 64.99780 * 12 9 7 14 14 H 1.08996 * 110.43513 * 333.90874 * 13 12 9 15 15 C 1.54106 * 110.48694 * 96.45202 * 13 12 9 16 16 O 1.43745 * 107.29161 * 120.70971 * 15 13 12 17 17 C 1.44378 * 106.97348 * 333.48027 * 16 15 13 18 18 H 1.08993 * 110.62203 * 281.56143 * 17 16 15 19 19 C 1.53002 * 110.74715 * 158.62937 * 17 16 15 20 20 C 1.53005 * 117.49855 * 134.60452 * 19 17 16 21 21 C 1.52999 * 117.50196 * 65.94022 * 19 17 16 22 22 C 1.54810 * 110.48916 * 211.21611 * 13 12 9 23 23 H 0.96998 * 120.00187 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00459 * 244.99489 * 12 9 7 25 25 H 1.09004 * 109.87542 * 240.13242 * 15 13 12 26 26 H 1.09000 * 109.87721 * 1.28413 * 15 13 12 27 27 H 1.09000 * 115.54937 * 280.27018 * 19 17 16 28 28 H 1.08998 * 117.49744 * 359.97438 * 20 19 17 29 29 H 1.08996 * 117.49812 * 145.02089 * 20 19 17 30 30 H 1.08996 * 117.50426 * 214.97732 * 21 19 17 31 31 H 1.08997 * 117.49240 * 359.97438 * 21 19 17 32 32 H 1.09005 * 110.90592 * 20.40605 * 22 13 12 33 33 H 1.09001 * 110.90204 * 143.97083 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4510 -2.7949 1.2501 12 7 2.2483 -3.9353 0.0005 13 6 3.1394 -4.1087 1.1504 14 1 3.2724 -3.1626 1.6749 15 6 2.5837 -5.1820 2.1065 16 8 3.5752 -6.2177 2.2089 17 6 4.3413 -6.1902 0.9855 18 1 3.7942 -6.6780 0.1789 19 6 5.7062 -6.8521 1.1857 20 6 6.1789 -7.8349 0.1126 21 6 5.7269 -8.3533 1.4802 22 6 4.5061 -4.6765 0.6960 23 1 -0.4850 0.8400 -0.0004 24 1 2.3172 -4.5325 -0.7607 25 1 2.4013 -4.7450 3.0883 26 1 1.6581 -5.5935 1.7039 27 1 6.4620 -6.2338 1.6699 28 1 5.5174 -8.0103 -0.7358 29 1 7.2458 -7.8635 -0.1088 30 1 6.4966 -8.7228 2.1578 31 1 4.7682 -8.8693 1.5317 32 1 4.6669 -4.4991 -0.3674 33 1 5.3188 -4.2532 1.2863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691401817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:29 Heat of formation + Delta-G solvation = -116.759595 kcal Electronic energy + Delta-G solvation = -18095.166892 eV Core-core repulsion = 15054.945429 eV Total energy + Delta-G solvation = -3040.221463 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62567 -36.81317 -35.23932 -34.15754 -33.98115 -33.10186 -30.09125 -27.96711 -26.17077 -23.43387 -22.50694 -20.96753 -20.55649 -19.10944 -17.59236 -16.66889 -16.26481 -15.77690 -15.41291 -14.98111 -14.69447 -14.28312 -13.97302 -13.63389 -13.32213 -12.50548 -12.18278 -11.94232 -11.70253 -11.63405 -11.32620 -11.30237 -11.22651 -10.96627 -10.64749 -10.48691 -10.36177 -10.31956 -10.22991 -10.04535 -9.48623 -9.26729 -9.08647 -8.59853 -6.73104 -5.35932 2.28317 3.06428 3.11304 3.16429 3.48091 4.02878 4.16561 4.47783 4.60671 4.64533 4.74019 4.85286 4.96448 5.12033 5.30207 5.34164 5.46037 5.50675 5.58861 5.75647 5.78310 5.90134 5.98198 6.02746 6.08349 6.15794 6.24930 6.48239 6.79422 7.05719 7.29080 7.82200 7.92866 8.85631 10.21200 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.033759 B = 0.005477 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.219781 B = 5110.702024 C = 5441.342659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.102 0.898 9 S 2.713 3.287 10 O -1.006 7.006 11 O -1.004 7.004 12 N -1.128 6.128 13 C 0.129 3.871 14 H 0.107 0.893 15 C 0.032 3.968 16 O -0.373 6.373 17 C 0.103 3.897 18 H 0.069 0.931 19 C -0.147 4.147 20 C -0.175 4.175 21 C -0.170 4.170 22 C -0.153 4.153 23 H 0.292 0.708 24 H 0.402 0.598 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.479 -10.102 1.419 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.156 5.156 8 H 0.120 0.880 9 S 2.812 3.188 10 O -0.996 6.996 11 O -0.994 6.994 12 N -0.881 5.881 13 C 0.020 3.980 14 H 0.125 0.875 15 C -0.047 4.047 16 O -0.293 6.293 17 C 0.046 3.954 18 H 0.087 0.913 19 C -0.166 4.166 20 C -0.212 4.212 21 C -0.207 4.207 22 C -0.192 4.192 23 H 0.102 0.898 24 H 0.233 0.767 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.352 -10.179 1.769 14.625 hybrid contribution 0.954 1.166 -0.511 1.590 sum 11.306 -9.013 1.258 14.513 Atomic orbital electron populations 1.69885 1.06789 1.30892 1.39820 1.24743 0.94464 1.00822 0.88486 0.86194 0.79878 0.79695 0.79755 1.18889 1.20100 1.18846 1.30516 1.06028 1.11841 1.67184 0.87998 1.00514 0.72112 0.73247 0.72908 1.93378 1.73046 1.87606 1.45610 1.93370 1.72707 1.87472 1.45824 1.56182 1.55212 1.50935 1.25803 1.21872 0.88959 1.00087 0.87125 0.87540 1.23845 0.91701 0.88024 1.01105 1.88861 1.47821 1.55015 1.37558 1.22619 0.90157 0.95045 0.87581 0.91338 1.22229 0.97354 0.92617 1.04352 1.22998 1.01659 1.03603 0.92965 1.22862 1.03093 0.96204 0.98555 1.23453 0.97526 0.94961 1.03254 0.89785 0.76747 0.88791 0.91408 0.87252 0.88647 0.88554 0.88850 0.88542 0.89208 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.56 13.19 55.43 0.73 -23.83 16 2 C 0.13 3.65 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -1.02 -27.39 9.62 30.60 0.29 -27.10 16 8 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 9 S 2.71 69.92 4.96 -107.50 -0.53 69.38 16 10 O -1.01 -29.03 18.02 -57.17 -1.03 -30.06 16 11 O -1.00 -28.43 17.78 -57.17 -1.02 -29.45 16 12 N -1.13 -21.43 5.41 -3.59 -0.02 -21.45 16 13 C 0.13 2.15 3.58 -66.40 -0.24 1.91 16 14 H 0.11 1.84 7.94 -51.93 -0.41 1.42 16 15 C 0.03 0.52 7.50 37.74 0.28 0.80 16 16 O -0.37 -5.74 11.23 -35.23 -0.40 -6.14 16 17 C 0.10 1.33 3.49 -25.68 -0.09 1.24 16 18 H 0.07 0.86 7.99 -51.93 -0.41 0.45 16 19 C -0.15 -1.58 5.48 -90.62 -0.50 -2.08 16 20 C -0.18 -1.56 10.20 -26.69 -0.27 -1.83 16 21 C -0.17 -1.66 10.25 -26.69 -0.27 -1.93 16 22 C -0.15 -2.01 6.24 -24.73 -0.15 -2.16 16 23 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.40 6.58 8.84 -34.47 -0.30 6.28 16 25 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.07 1.16 7.93 -51.93 -0.41 0.74 16 27 H 0.11 1.11 8.01 -51.93 -0.42 0.69 16 28 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.09 1.02 7.96 -51.93 -0.41 0.60 16 LS Contribution 296.77 15.07 4.47 4.47 Total: -1.00 -34.02 296.77 -8.30 -42.32 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.45 Total: 7.13 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -1.04 Total: -27.59 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.71 Total: -45.28 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -2.44 Total: -65.64 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 69.92 SS G_CDS: -0.53 Total: 69.38 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.02 -8.30 -42.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691401817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.441 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds