Wall clock time and date at job start Mon Mar 30 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48508 * 109.46969 * 239.99724 * 3 2 1 5 5 H 1.48493 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46962 * 120.00171 * 3 2 1 7 7 C 1.37877 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99914 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00014 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40384 * 66.45660 * 9 7 2 11 11 O 1.42099 * 106.39738 * 293.53662 * 9 7 2 12 12 N 1.65593 * 107.21584 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00226 * 64.99780 * 12 9 7 14 14 H 1.08996 * 110.43513 * 333.90874 * 13 12 9 15 15 C 1.54106 * 110.48694 * 96.45202 * 13 12 9 16 16 O 1.43745 * 107.29161 * 120.70971 * 15 13 12 17 17 C 1.44378 * 106.97348 * 333.48027 * 16 15 13 18 18 H 1.08993 * 110.62203 * 281.56143 * 17 16 15 19 19 C 1.53002 * 110.74715 * 158.62937 * 17 16 15 20 20 C 1.53005 * 117.49855 * 134.60452 * 19 17 16 21 21 C 1.52999 * 117.50196 * 65.94022 * 19 17 16 22 22 C 1.54810 * 110.48916 * 211.21611 * 13 12 9 23 23 H 0.96998 * 120.00187 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00459 * 244.99489 * 12 9 7 25 25 H 1.09004 * 109.87542 * 240.13242 * 15 13 12 26 26 H 1.09000 * 109.87721 * 1.28413 * 15 13 12 27 27 H 1.09000 * 115.54937 * 280.27018 * 19 17 16 28 28 H 1.08998 * 117.49744 * 359.97438 * 20 19 17 29 29 H 1.08996 * 117.49812 * 145.02089 * 20 19 17 30 30 H 1.08996 * 117.50426 * 214.97732 * 21 19 17 31 31 H 1.08997 * 117.49240 * 359.97438 * 21 19 17 32 32 H 1.09005 * 110.90592 * 20.40605 * 22 13 12 33 33 H 1.09001 * 110.90204 * 143.97083 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4510 -2.7949 1.2501 12 7 2.2483 -3.9353 0.0005 13 6 3.1394 -4.1087 1.1504 14 1 3.2724 -3.1626 1.6749 15 6 2.5837 -5.1820 2.1065 16 8 3.5752 -6.2177 2.2089 17 6 4.3413 -6.1902 0.9855 18 1 3.7942 -6.6780 0.1789 19 6 5.7062 -6.8521 1.1857 20 6 6.1789 -7.8349 0.1126 21 6 5.7269 -8.3533 1.4802 22 6 4.5061 -4.6765 0.6960 23 1 -0.4850 0.8400 -0.0004 24 1 2.3172 -4.5325 -0.7607 25 1 2.4013 -4.7450 3.0883 26 1 1.6581 -5.5935 1.7039 27 1 6.4620 -6.2338 1.6699 28 1 5.5174 -8.0103 -0.7358 29 1 7.2458 -7.8635 -0.1088 30 1 6.4966 -8.7228 2.1578 31 1 4.7682 -8.8693 1.5317 32 1 4.6669 -4.4991 -0.3674 33 1 5.3188 -4.2532 1.2863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691401817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:29 Heat of formation + Delta-G solvation = -143.671711 kcal Electronic energy + Delta-G solvation = -18096.333889 eV Core-core repulsion = 15054.945429 eV Total energy + Delta-G solvation = -3041.388460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77299 -37.71445 -37.36284 -36.14569 -35.60861 -35.13688 -31.27343 -29.28080 -28.26199 -24.49138 -23.23765 -22.26122 -21.51627 -21.04190 -19.44031 -18.30687 -17.79842 -17.06954 -16.93723 -16.49223 -16.01163 -15.88653 -15.48823 -15.13881 -14.52896 -14.00543 -13.87737 -13.41954 -13.22117 -12.98847 -12.84054 -12.51974 -12.44865 -12.35509 -12.32612 -12.31918 -12.15997 -12.02017 -11.22805 -11.21912 -11.07874 -10.90584 -10.66499 -10.27744 -8.75258 -7.48572 0.32422 1.35925 1.37602 1.50663 2.21148 2.56198 2.59153 2.92885 3.27301 3.48501 3.59894 3.75421 3.93837 4.03749 4.11366 4.14355 4.27408 4.43342 4.49081 4.54301 4.68208 4.81394 4.84074 4.96251 5.05352 5.07907 5.20442 5.30087 5.32396 5.34172 5.86084 5.91217 6.33968 6.78690 8.21141 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.033759 B = 0.005477 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.219781 B = 5110.702024 C = 5441.342659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.249 1.249 7 C -1.040 5.040 8 H 0.124 0.876 9 S 2.719 3.281 10 O -1.045 7.045 11 O -1.039 7.039 12 N -1.111 6.111 13 C 0.117 3.883 14 H 0.100 0.900 15 C 0.032 3.968 16 O -0.381 6.381 17 C 0.099 3.901 18 H 0.070 0.930 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.175 4.175 22 C -0.142 4.142 23 H 0.299 0.701 24 H 0.415 0.585 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.225 -9.916 1.217 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.172 1.172 7 C -1.173 5.173 8 H 0.142 0.858 9 S 2.820 3.180 10 O -1.036 7.036 11 O -1.029 7.029 12 N -0.869 5.869 13 C 0.009 3.991 14 H 0.118 0.882 15 C -0.046 4.046 16 O -0.301 6.301 17 C 0.042 3.958 18 H 0.088 0.912 19 C -0.179 4.179 20 C -0.196 4.196 21 C -0.212 4.212 22 C -0.181 4.181 23 H 0.109 0.891 24 H 0.249 0.751 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.097 -10.030 1.559 16.570 hybrid contribution 0.119 0.981 -0.433 1.079 sum 13.216 -9.050 1.125 16.057 Atomic orbital electron populations 1.69988 1.08831 1.32411 1.41326 1.26019 0.95341 1.05417 0.87538 0.85152 0.78738 0.74471 0.80768 1.17441 1.19077 1.17212 1.30873 1.07299 1.12342 1.66812 0.85816 0.99960 0.72579 0.73973 0.71538 1.93315 1.74871 1.88406 1.46977 1.93319 1.74365 1.88192 1.46989 1.55516 1.54582 1.49591 1.27230 1.22130 0.90466 1.00188 0.86337 0.88196 1.23722 0.91678 0.88277 1.00965 1.88863 1.47738 1.54506 1.38958 1.22808 0.91142 0.95203 0.86678 0.91220 1.22233 0.96241 0.93147 1.06266 1.23097 1.02781 1.01383 0.92388 1.22925 1.03166 0.95357 0.99789 1.23458 0.95520 0.94780 1.04367 0.89124 0.75060 0.88810 0.92697 0.86375 0.88420 0.86679 0.87564 0.89576 0.87862 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.79 13.19 21.45 0.28 -52.50 16 2 C 0.07 3.81 5.46 84.65 0.46 4.27 16 3 Si 0.99 40.23 29.54 68.60 2.03 42.26 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 7 C -1.04 -55.34 9.62 67.73 0.65 -54.69 16 8 H 0.12 5.80 7.81 -2.91 -0.02 5.78 16 9 S 2.72 142.38 4.96 -56.49 -0.28 142.10 16 10 O -1.05 -61.77 18.02 -128.00 -2.31 -64.07 16 11 O -1.04 -60.51 17.78 -128.00 -2.28 -62.78 16 12 N -1.11 -41.86 5.41 -165.26 -0.89 -42.76 16 13 C 0.12 3.80 3.58 45.98 0.16 3.97 16 14 H 0.10 3.38 7.94 -2.39 -0.02 3.37 16 15 C 0.03 1.06 7.50 72.36 0.54 1.60 16 16 O -0.38 -11.36 11.23 -148.98 -1.67 -13.03 16 17 C 0.10 2.36 3.49 31.28 0.11 2.46 16 18 H 0.07 1.63 7.99 -2.39 -0.02 1.61 16 19 C -0.16 -3.03 5.48 -10.79 -0.06 -3.09 16 20 C -0.16 -2.36 10.20 30.62 0.31 -2.05 16 21 C -0.18 -3.03 10.25 30.62 0.31 -2.72 16 22 C -0.14 -3.40 6.24 31.89 0.20 -3.20 16 23 H 0.30 15.89 8.31 -92.71 -0.77 15.12 16 24 H 0.42 13.35 8.84 -96.75 -0.85 12.49 16 25 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 27 H 0.12 2.03 8.01 -2.39 -0.02 2.01 16 28 H 0.10 1.41 8.10 -2.39 -0.02 1.39 16 29 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 2.22 8.06 -2.38 -0.02 2.20 16 33 H 0.11 2.16 7.96 -2.39 -0.02 2.14 16 Total: -1.00 -73.76 296.77 -2.16 -75.92 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.26 Total: 28.33 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 2.70 Total: -53.46 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -0.61 Total: -95.26 kcal Atomic # 8 Polarization: -133.63 SS G_CDS: -6.25 Total: -139.89 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 142.38 SS G_CDS: -0.28 Total: 142.10 kcal Total: -73.76 -2.16 -75.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691401817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.753 kcal (2) G-P(sol) polarization free energy of solvation -73.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds