Wall clock time and date at job start Mon Mar 30 2020 05:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81401 * 109.47346 * 2 1 4 4 O 1.42094 * 108.57813 * 288.97095 * 3 2 1 5 5 O 1.42103 * 108.57574 * 59.99482 * 3 2 1 6 6 C 1.81398 * 101.92137 * 174.47846 * 3 2 1 7 7 C 1.53002 * 115.54761 * 160.63508 * 6 3 2 8 8 N 1.46492 * 109.47449 * 316.93442 * 7 6 3 9 9 C 1.34770 * 120.00197 * 173.70342 * 8 7 6 10 10 O 1.21689 * 120.00276 * 0.02562 * 9 8 7 11 11 C 1.46379 * 120.00203 * 180.02562 * 9 8 7 12 12 H 1.07992 * 119.99827 * 0.02562 * 11 9 8 13 13 C 1.40053 * 120.00119 * 180.02562 * 11 9 8 14 14 N 1.30678 * 119.99974 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 119.99991 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47165 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47552 * 119.99546 * 15 13 11 18 18 H 1.48504 * 109.46837 * 239.99654 * 15 13 11 19 19 C 1.53001 * 117.49587 * 14.93318 * 6 3 2 20 20 C 1.52997 * 60.00089 * 252.50534 * 19 6 3 21 21 H 1.08997 * 109.46973 * 300.00140 * 1 2 3 22 22 H 1.09004 * 109.46829 * 59.99675 * 1 2 3 23 23 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46973 * 239.99860 * 2 1 3 25 25 H 1.09004 * 109.46829 * 120.00325 * 2 1 3 26 26 H 1.08998 * 109.46653 * 76.94141 * 7 6 3 27 27 H 1.09000 * 109.47146 * 196.93490 * 7 6 3 28 28 H 0.97004 * 119.99768 * 353.71402 * 8 7 6 29 29 H 0.97000 * 119.99888 * 180.02562 * 14 13 11 30 30 H 1.08996 * 117.50588 * 359.97438 * 19 6 3 31 31 H 1.09009 * 117.49416 * 145.01849 * 19 6 3 32 32 H 1.09001 * 117.50587 * 252.51439 * 20 19 6 33 33 H 1.08999 * 117.49991 * 107.48388 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8728 2.2830 -1.2737 5 8 1.6506 2.3616 1.1665 6 6 3.9252 1.4746 0.1708 7 6 4.7904 2.6648 -0.2486 8 7 4.2747 3.2268 -1.4993 9 6 4.8018 4.3637 -1.9951 10 8 5.7064 4.9234 -1.4040 11 6 4.2861 4.9256 -3.2445 12 1 3.4831 4.4292 -3.7689 13 6 4.8342 6.1068 -3.7600 14 7 5.8057 6.7077 -3.1252 15 14 4.1757 6.8241 -5.3540 16 1 3.0840 5.9607 -5.8716 17 1 3.6501 8.1899 -5.1024 18 1 5.2700 6.8916 -6.3557 19 6 4.4806 0.0720 -0.0848 20 6 4.4170 0.6214 1.3417 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.7627 3.4264 0.5307 27 1 5.8181 2.3329 -0.3959 28 1 3.5538 2.7805 -1.9706 29 1 6.1850 7.5261 -3.4820 30 1 3.7702 -0.7092 -0.3551 31 1 5.4627 -0.0029 -0.5519 32 1 5.3571 0.9079 1.8132 33 1 3.6647 0.2019 2.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693472527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:00 Heat of formation + Delta-G solvation = -77.800710 kcal Electronic energy + Delta-G solvation = -18212.465269 eV Core-core repulsion = 15173.933190 eV Total energy + Delta-G solvation = -3038.532079 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.33718 -37.06683 -36.61212 -35.91050 -33.52442 -32.72025 -31.97434 -27.40264 -25.19660 -24.46100 -22.79110 -21.78082 -19.71202 -18.65077 -17.19197 -17.03336 -16.15095 -15.97478 -15.26011 -14.87784 -14.49646 -13.99457 -13.92170 -13.74925 -13.26819 -13.10345 -12.66028 -12.34262 -12.00825 -11.91646 -11.81491 -11.67763 -11.61910 -11.23656 -11.00806 -10.95135 -10.72230 -10.41932 -10.31387 -10.14628 -10.02073 -8.76828 -7.54620 -7.47951 -6.09930 -4.52732 -0.02069 2.74807 3.03661 3.20538 3.28324 3.34758 3.64900 4.06340 4.16512 4.27163 4.39069 4.43750 4.54175 4.66715 4.81226 4.95864 5.15060 5.22519 5.35699 5.40389 5.48961 5.59009 5.70352 5.77364 5.84006 6.27273 6.31755 7.55309 8.10397 8.14665 8.46418 9.12909 9.62556 10.68550 10.86851 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.006045 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.021930 B = 4630.976753 C = 5199.300207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.625 4.625 3 S 2.453 3.547 4 O -0.914 6.914 5 O -0.932 6.932 6 C -0.636 4.636 7 C 0.186 3.814 8 N -0.778 5.778 9 C 0.555 3.445 10 O -0.585 6.585 11 C -0.539 4.539 12 H 0.072 0.928 13 C 0.086 3.914 14 N -0.770 5.770 15 Si 0.908 3.092 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.277 1.277 19 C -0.132 4.132 20 C -0.121 4.121 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.135 0.865 25 H 0.130 0.870 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.397 0.603 29 H 0.267 0.733 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 -17.122 6.315 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.753 4.753 3 S 2.632 3.368 4 O -0.910 6.910 5 O -0.929 6.929 6 C -0.725 4.725 7 C 0.059 3.941 8 N -0.443 5.443 9 C 0.360 3.640 10 O -0.468 6.468 11 C -0.576 4.576 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.400 5.400 15 Si 0.733 3.267 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.169 4.169 20 C -0.159 4.159 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.154 0.846 25 H 0.148 0.852 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.236 0.764 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.020 -15.776 6.681 18.515 hybrid contribution -0.056 -0.567 -0.894 1.060 sum -7.076 -16.343 5.787 18.725 Atomic orbital electron populations 1.21503 0.90250 1.04668 1.03940 1.30400 1.07560 1.26046 1.11324 1.07333 0.76208 0.77507 0.75743 1.93495 1.82370 1.73789 1.41344 1.93559 1.77653 1.71219 1.50483 1.32088 1.23465 1.02211 1.14748 1.20095 0.94744 0.89483 0.89751 1.46735 1.42912 1.29933 1.24723 1.18234 0.82057 0.77953 0.85774 1.90583 1.32470 1.61337 1.62406 1.20963 1.20441 1.09229 1.06926 0.90976 1.25736 0.93700 0.96127 0.97773 1.70048 1.19425 1.14599 1.35893 0.86308 0.79413 0.79185 0.81819 1.18621 1.20161 1.20240 1.23145 1.04200 0.90434 0.99170 1.22858 1.04272 0.98544 0.90219 0.90769 0.90727 0.90160 0.84636 0.85206 0.91558 0.91987 0.76394 0.92279 0.87262 0.86556 0.86489 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.63 -5.26 4.89 37.16 0.18 -5.08 16 3 S 2.45 35.46 4.83 -107.50 -0.52 34.94 16 4 O -0.91 -16.88 14.87 -57.83 -0.86 -17.74 16 5 O -0.93 -16.27 18.08 -57.83 -1.05 -17.32 16 6 C -0.64 -8.79 2.57 -90.62 -0.23 -9.02 16 7 C 0.19 3.70 5.75 -4.04 -0.02 3.67 16 8 N -0.78 -19.07 5.06 -61.73 -0.31 -19.38 16 9 C 0.56 16.91 7.75 -12.99 -0.10 16.81 16 10 O -0.58 -19.73 15.00 5.20 0.08 -19.65 16 11 C -0.54 -16.32 9.54 -35.63 -0.34 -16.66 16 12 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 13 C 0.09 2.52 5.50 -17.36 -0.10 2.42 16 14 N -0.77 -24.00 11.83 55.55 0.66 -23.34 16 15 Si 0.91 21.15 29.56 -169.99 -5.02 16.13 16 16 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.13 -1.22 9.47 -26.73 -0.25 -1.48 16 20 C -0.12 -1.14 9.69 -26.73 -0.26 -1.40 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.14 0.85 7.25 -51.93 -0.38 0.48 16 25 H 0.13 0.72 7.22 -51.92 -0.37 0.34 16 26 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 27 H 0.06 1.21 7.99 -51.93 -0.41 0.79 16 28 H 0.40 9.04 5.39 -40.82 -0.22 8.82 16 29 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 30 H 0.11 0.65 5.90 -51.93 -0.31 0.34 16 31 H 0.12 1.10 8.11 -51.92 -0.42 0.68 16 32 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 0.71 7.51 -51.93 -0.39 0.32 16 LS Contribution 291.80 15.07 4.40 4.40 Total: -1.00 -40.57 291.80 -7.55 -48.12 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.16 Total: 5.43 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.75 Total: -11.59 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.34 Total: -42.72 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -1.83 Total: -54.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 35.46 SS G_CDS: -0.52 Total: 34.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -40.57 -7.55 -48.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693472527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.681 kcal (2) G-P(sol) polarization free energy of solvation -40.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds