Wall clock time and date at job start Mon Mar 30 2020 05:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81401 * 109.47346 * 2 1 4 4 O 1.42094 * 108.57813 * 288.97095 * 3 2 1 5 5 O 1.42103 * 108.57574 * 59.99482 * 3 2 1 6 6 C 1.81398 * 101.92137 * 174.47846 * 3 2 1 7 7 C 1.53002 * 115.54761 * 160.63508 * 6 3 2 8 8 N 1.46492 * 109.47449 * 316.93442 * 7 6 3 9 9 C 1.34770 * 120.00197 * 173.70342 * 8 7 6 10 10 O 1.21689 * 120.00276 * 0.02562 * 9 8 7 11 11 C 1.46379 * 120.00203 * 180.02562 * 9 8 7 12 12 H 1.07992 * 119.99827 * 0.02562 * 11 9 8 13 13 C 1.40053 * 120.00119 * 180.02562 * 11 9 8 14 14 N 1.30678 * 119.99974 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 119.99991 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47165 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47552 * 119.99546 * 15 13 11 18 18 H 1.48504 * 109.46837 * 239.99654 * 15 13 11 19 19 C 1.53001 * 117.49587 * 14.93318 * 6 3 2 20 20 C 1.52997 * 60.00089 * 252.50534 * 19 6 3 21 21 H 1.08997 * 109.46973 * 300.00140 * 1 2 3 22 22 H 1.09004 * 109.46829 * 59.99675 * 1 2 3 23 23 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46973 * 239.99860 * 2 1 3 25 25 H 1.09004 * 109.46829 * 120.00325 * 2 1 3 26 26 H 1.08998 * 109.46653 * 76.94141 * 7 6 3 27 27 H 1.09000 * 109.47146 * 196.93490 * 7 6 3 28 28 H 0.97004 * 119.99768 * 353.71402 * 8 7 6 29 29 H 0.97000 * 119.99888 * 180.02562 * 14 13 11 30 30 H 1.08996 * 117.50588 * 359.97438 * 19 6 3 31 31 H 1.09009 * 117.49416 * 145.01849 * 19 6 3 32 32 H 1.09001 * 117.50587 * 252.51439 * 20 19 6 33 33 H 1.08999 * 117.49991 * 107.48388 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8728 2.2830 -1.2737 5 8 1.6506 2.3616 1.1665 6 6 3.9252 1.4746 0.1708 7 6 4.7904 2.6648 -0.2486 8 7 4.2747 3.2268 -1.4993 9 6 4.8018 4.3637 -1.9951 10 8 5.7064 4.9234 -1.4040 11 6 4.2861 4.9256 -3.2445 12 1 3.4831 4.4292 -3.7689 13 6 4.8342 6.1068 -3.7600 14 7 5.8057 6.7077 -3.1252 15 14 4.1757 6.8241 -5.3540 16 1 3.0840 5.9607 -5.8716 17 1 3.6501 8.1899 -5.1024 18 1 5.2700 6.8916 -6.3557 19 6 4.4806 0.0720 -0.0848 20 6 4.4170 0.6214 1.3417 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.7627 3.4264 0.5307 27 1 5.8181 2.3329 -0.3959 28 1 3.5538 2.7805 -1.9706 29 1 6.1850 7.5261 -3.4820 30 1 3.7702 -0.7092 -0.3551 31 1 5.4627 -0.0029 -0.5519 32 1 5.3571 0.9079 1.8132 33 1 3.6647 0.2019 2.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693472527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:00 Heat of formation + Delta-G solvation = -112.317251 kcal Electronic energy + Delta-G solvation = -18213.962018 eV Core-core repulsion = 15173.933190 eV Total energy + Delta-G solvation = -3040.028829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83866 -38.51237 -38.08106 -37.12505 -35.02286 -34.41103 -33.74864 -29.38486 -27.10565 -25.19753 -23.53131 -22.94429 -21.86119 -19.88629 -19.10107 -18.05809 -17.55844 -17.25602 -16.98279 -16.20690 -15.99442 -15.53591 -15.30067 -15.23704 -14.36039 -14.30258 -14.02271 -13.70155 -13.36268 -13.22787 -13.13823 -13.04962 -12.78691 -12.64512 -12.59582 -12.27018 -12.20339 -11.99487 -11.75335 -11.46286 -11.07063 -10.96469 -9.94056 -9.57959 -8.33382 -6.89931 -1.03265 1.36702 1.38102 1.56866 1.76872 2.15495 2.25660 2.40755 2.61800 3.06654 3.17730 3.42663 3.54350 3.64741 3.72933 3.78660 3.99110 4.36145 4.51658 4.55526 4.58402 4.64131 4.74943 4.79017 4.93412 5.09241 5.14830 5.29220 5.85818 6.16433 6.22622 6.82377 7.48283 8.42292 8.62591 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.006045 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.021930 B = 4630.976753 C = 5199.300207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.581 4.581 3 S 2.422 3.578 4 O -0.975 6.975 5 O -0.982 6.982 6 C -0.670 4.670 7 C 0.182 3.818 8 N -0.770 5.770 9 C 0.534 3.466 10 O -0.633 6.633 11 C -0.574 4.574 12 H 0.082 0.918 13 C 0.027 3.973 14 N -0.821 5.821 15 Si 1.001 2.999 16 H -0.250 1.250 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.106 4.106 20 C -0.104 4.104 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.119 0.881 24 H 0.172 0.828 25 H 0.177 0.823 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.405 0.595 29 H 0.276 0.724 30 H 0.157 0.843 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 -20.593 5.674 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.715 4.715 3 S 2.609 3.391 4 O -0.971 6.971 5 O -0.980 6.980 6 C -0.760 4.760 7 C 0.056 3.944 8 N -0.433 5.433 9 C 0.339 3.661 10 O -0.521 6.521 11 C -0.610 4.610 12 H 0.100 0.900 13 C -0.188 4.188 14 N -0.450 5.450 15 Si 0.820 3.180 16 H -0.173 1.173 17 H -0.190 1.190 18 H -0.184 1.184 19 C -0.144 4.144 20 C -0.142 4.142 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.137 0.863 24 H 0.189 0.811 25 H 0.194 0.806 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.246 0.754 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.332 -19.238 6.059 21.823 hybrid contribution 0.348 0.368 -0.589 0.777 sum -7.984 -18.870 5.470 21.207 Atomic orbital electron populations 1.21733 0.90001 1.06824 1.03390 1.30087 1.07418 1.18523 1.15425 1.07789 0.76375 0.81030 0.73873 1.93399 1.83088 1.77520 1.43110 1.93489 1.78383 1.74825 1.51255 1.31749 1.22011 1.02040 1.20171 1.20096 0.96191 0.91295 0.86786 1.46477 1.42334 1.28486 1.25993 1.18653 0.81895 0.79336 0.86264 1.90521 1.34573 1.63204 1.63786 1.21473 1.21311 1.10642 1.07622 0.90026 1.27052 0.93448 0.95922 1.02404 1.70193 1.20943 1.15399 1.38487 0.84937 0.79191 0.78300 0.75622 1.17309 1.19012 1.18428 1.23517 1.04808 0.87579 0.98472 1.23245 1.05004 0.95490 0.90496 0.91321 0.91793 0.86267 0.81068 0.80559 0.94909 0.92284 0.75360 0.91362 0.82494 0.86819 0.86568 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.58 -6.78 4.89 71.98 0.35 -6.43 16 3 S 2.42 68.96 4.83 -56.49 -0.27 68.69 16 4 O -0.98 -37.46 14.87 -127.37 -1.89 -39.36 16 5 O -0.98 -35.34 18.08 -127.37 -2.30 -37.64 16 6 C -0.67 -17.95 2.57 -10.79 -0.03 -17.97 16 7 C 0.18 7.67 5.75 86.38 0.50 8.17 16 8 N -0.77 -39.94 5.06 -467.43 -2.37 -42.30 16 9 C 0.53 34.49 7.75 86.36 0.67 35.16 16 10 O -0.63 -45.59 15.00 -4.31 -0.06 -45.66 16 11 C -0.57 -36.19 9.54 24.83 0.24 -35.95 16 12 H 0.08 4.80 7.85 -2.91 -0.02 4.77 16 13 C 0.03 1.59 5.50 85.30 0.47 2.06 16 14 N -0.82 -53.04 11.83 21.84 0.26 -52.78 16 15 Si 1.00 43.96 29.56 68.60 2.03 45.99 16 16 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 19 C -0.11 -1.54 9.47 30.59 0.29 -1.25 16 20 C -0.10 -1.62 9.69 30.59 0.30 -1.32 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.17 0.96 7.25 -2.39 -0.02 0.94 16 25 H 0.18 0.57 7.22 -2.39 -0.02 0.55 16 26 H 0.03 1.55 8.12 -2.39 -0.02 1.53 16 27 H 0.06 2.45 7.99 -2.39 -0.02 2.43 16 28 H 0.41 19.43 5.39 -92.71 -0.50 18.93 16 29 H 0.28 15.97 8.29 -92.71 -0.77 15.20 16 30 H 0.16 0.74 5.90 -2.39 -0.01 0.72 16 31 H 0.11 1.78 8.11 -2.38 -0.02 1.76 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.15 1.12 7.51 -2.39 -0.02 1.11 16 Total: -1.00 -99.06 291.80 -0.49 -99.55 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.63 Total: 22.40 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.50 Total: -18.88 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -2.11 Total: -95.09 kcal Atomic # 8 Polarization: -118.39 SS G_CDS: -4.26 Total: -122.66 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 68.96 SS G_CDS: -0.27 Total: 68.69 kcal Total: -99.06 -0.49 -99.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693472527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.764 kcal (2) G-P(sol) polarization free energy of solvation -99.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds