Wall clock time and date at job start Mon Mar 30 2020 04:14:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.52995 * 109.47346 * 2 1
4 4 N 1.46503 * 109.47292 * 119.99963 * 2 1 3
5 5 C 1.36932 * 120.00039 * 294.92423 * 4 2 1
6 6 H 1.08004 * 120.00383 * 37.16326 * 5 4 2
7 7 C 1.38815 * 120.00387 * 217.17003 * 5 4 2
8 8 N 1.31624 * 119.99630 * 21.23210 * 7 5 4
9 9 Si 1.86794 * 120.00493 * 201.23557 * 7 5 4
10 10 H 1.48503 * 109.46866 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47284 * 119.99674 * 9 7 5
12 12 H 1.48506 * 109.47279 * 239.99917 * 9 7 5
13 13 C 1.46501 * 119.99950 * 114.91887 * 4 2 1
14 14 C 1.50703 * 109.47177 * 269.99804 * 13 4 2
15 15 N 1.30220 * 121.08718 * 90.02967 * 14 13 4
16 16 S 1.69962 * 105.64910 * 179.72809 * 15 14 13
17 17 C 1.72310 * 94.53184 * 359.97438 * 16 15 14
18 18 Cl 1.73600 * 127.48370 * 179.97438 * 17 16 15
19 19 N 1.31044 * 105.02905 * 0.02562 * 17 16 15
20 20 H 1.09005 * 109.47347 * 303.39046 * 1 2 3
21 21 H 1.08994 * 109.47502 * 63.39469 * 1 2 3
22 22 H 1.09004 * 109.47569 * 183.39516 * 1 2 3
23 23 H 1.09003 * 109.47146 * 239.99799 * 2 1 3
24 24 H 1.09000 * 109.47361 * 181.59602 * 3 2 1
25 25 H 1.08999 * 109.47030 * 301.59633 * 3 2 1
26 26 H 1.08997 * 109.47100 * 61.59655 * 3 2 1
27 27 H 0.96996 * 119.99988 * 180.02562 * 8 7 5
28 28 H 1.09003 * 109.46739 * 150.00314 * 13 4 2
29 29 H 1.08997 * 109.47490 * 30.00371 * 13 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 1.7754 -0.1653 2.4372
6 1 0.8332 0.3211 2.6428
7 6 2.7401 -0.2577 3.4311
8 7 4.0011 -0.4523 3.1080
9 14 2.2486 -0.1061 5.2268
10 1 0.7822 0.1080 5.3223
11 1 2.6155 -1.3517 5.9473
12 1 2.9576 1.0466 5.8384
13 6 2.7665 -1.9433 1.0646
14 6 1.8082 -3.1061 1.0922
15 7 1.2806 -3.5687 -0.0047
16 16 0.2853 -4.8605 0.4746
17 6 0.6472 -4.6963 2.1512
18 17 0.0365 -5.6559 3.4627
19 7 1.4826 -3.6891 2.2215
20 1 -0.3634 0.5656 0.8581
21 1 -0.3634 0.4602 -0.9188
22 1 -0.3634 -1.0259 0.0609
23 1 1.8933 -0.5139 -0.8900
24 1 3.1296 1.4426 -0.0286
25 1 1.6534 1.9645 -0.8753
26 1 1.7002 1.9479 0.9039
27 1 4.6752 -0.5173 3.8025
28 1 3.4715 -2.0338 1.8910
29 1 3.3112 -1.9437 0.1206
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000694435655.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:14:56
Heat of formation + Delta-G solvation = 69.476720 kcal
Electronic energy + Delta-G solvation = -15819.548650 eV
Core-core repulsion = 13124.571820 eV
Total energy + Delta-G solvation = -2694.976829 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 261.040 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-39.77531 -37.03850 -36.41871 -32.51700 -31.91267 -30.05793 -26.96577 -26.22424
-24.72591 -22.99140 -19.81268 -19.51112 -18.57080 -16.55664 -16.04448 -15.10420
-15.03113 -14.11380 -13.71982 -13.56897 -12.74968 -12.40388 -12.28484 -12.12293
-11.76101 -11.46853 -11.36450 -11.22536 -10.79807 -10.78184 -10.51665 -10.37782
-10.16607 -10.01430 -9.81059 -9.67736 -9.37674 -8.70649 -8.57279 -6.77547
-5.93037 -3.46700 0.63303 0.85430 1.86427 2.22859 3.07532 3.36328
3.44893 3.46855 4.43160 4.72416 5.28297 5.33749 5.89956 5.92810
6.09091 6.25876 6.36692 6.40990 6.48035 6.65251 6.72740 6.74892
7.13774 7.25818 7.34451 7.76329 8.04279 8.40174 9.02161 9.66205
10.20970 11.09587
Molecular weight = 261.04amu
Principal moments of inertia in cm(-1)
A = 0.017260 B = 0.009494 C = 0.006938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1621.881471 B = 2948.481720 C = 4035.035629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.162 3.838
3 C -0.143 4.143
4 N -0.555 5.555
5 C -0.256 4.256
6 H 0.063 0.937
7 C 0.027 3.973
8 N -0.879 5.879
9 Si 0.897 3.103
10 H -0.276 1.276
11 H -0.284 1.284
12 H -0.290 1.290
13 C 0.216 3.784
14 C 0.283 3.717
15 N -0.467 5.467
16 S 0.201 5.799
17 C 0.107 3.893
18 Cl 0.039 6.961
19 N -0.465 5.465
20 H 0.052 0.948
21 H 0.039 0.961
22 H 0.040 0.960
23 H 0.052 0.948
24 H 0.051 0.949
25 H 0.033 0.967
26 H 0.059 0.941
27 H 0.258 0.742
28 H 0.129 0.871
29 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.644 -7.334 -3.536 9.907
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.056 3.944
3 C -0.201 4.201
4 N -0.273 5.273
5 C -0.386 4.386
6 H 0.080 0.920
7 C -0.175 4.175
8 N -0.520 5.520
9 Si 0.727 3.273
10 H -0.201 1.201
11 H -0.210 1.210
12 H -0.216 1.216
13 C 0.082 3.918
14 C -0.008 4.008
15 N -0.297 5.297
16 S 0.335 5.665
17 C -0.208 4.208
18 Cl 0.067 6.933
19 N -0.188 5.188
20 H 0.071 0.929
21 H 0.058 0.942
22 H 0.059 0.941
23 H 0.070 0.930
24 H 0.070 0.930
25 H 0.052 0.948
26 H 0.079 0.921
27 H 0.068 0.932
28 H 0.146 0.854
29 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -5.771 -7.475 -4.528 10.473
hybrid contribution -0.145 0.121 2.103 2.112
sum -5.916 -7.355 -2.425 9.745
Atomic orbital electron populations
1.22154 0.98679 1.00441 0.99949 1.20506 0.92056 0.92601 0.89243
1.21987 1.01005 0.97114 1.00040 1.43886 1.63752 1.17378 1.02333
1.18923 0.98032 1.34435 0.87235 0.91977 1.25109 0.94342 0.99044
0.99019 1.69916 0.99540 1.50113 1.32455 0.86325 0.78388 0.77413
0.85222 1.20124 1.20976 1.21641 1.20129 0.90091 0.78142 1.03439
1.25823 0.98033 0.96478 0.80463 1.77865 1.15047 1.10146 1.26628
1.84745 1.47887 1.34848 0.98996 1.29042 0.98710 0.97010 0.96055
1.98414 1.83704 1.65692 1.45528 1.67181 1.13854 1.07034 1.30720
0.92911 0.94195 0.94130 0.93017 0.93000 0.94809 0.92143 0.93185
0.85432 0.92120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 37.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.94 9.19 37.15 0.34 -2.60 15
2 C 0.16 3.35 3.37 -67.94 -0.23 3.13 15
3 C -0.14 -2.79 9.11 37.16 0.34 -2.45 15
4 N -0.55 -13.16 2.35 -167.02 -0.39 -13.55 15
5 C -0.26 -6.65 8.04 -15.06 -0.12 -6.77 15
6 H 0.06 1.66 7.15 -52.48 -0.38 1.28 15
7 C 0.03 0.70 4.96 -17.43 -0.09 0.62 15
8 N -0.88 -23.89 11.43 55.49 0.63 -23.26 15
9 Si 0.90 21.46 29.60 -169.99 -5.03 16.43 15
10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15
11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15
12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15
13 C 0.22 4.98 5.81 -5.19 -0.03 4.95 15
14 C 0.28 6.11 7.15 -159.04 -1.14 4.97 15
15 N -0.47 -9.25 12.16 29.46 0.36 -8.90 15
16 S 0.20 3.27 23.81 -107.50 -2.56 0.71 15
17 C 0.11 1.91 8.50 52.43 0.45 2.36 15
18 Cl 0.04 0.57 29.33 -51.86 -1.52 -0.95 15
19 N -0.47 -10.04 10.57 -12.25 -0.13 -10.17 15
20 H 0.05 1.05 7.32 -51.93 -0.38 0.67 15
21 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15
22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15
23 H 0.05 1.04 7.77 -51.93 -0.40 0.63 15
24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15
25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15
26 H 0.06 1.27 7.50 -51.93 -0.39 0.88 15
27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15
28 H 0.13 3.29 5.48 -51.93 -0.28 3.00 15
29 H 0.06 1.32 7.88 -51.93 -0.41 0.91 15
LS Contribution 280.68 15.07 4.23 4.23
Total: -1.00 -27.24 280.68 -7.96 -35.20
By element:
Atomic # 1 Polarization: -0.87 SS G_CDS: -3.07 Total: -3.94 kcal
Atomic # 6 Polarization: 4.67 SS G_CDS: -0.48 Total: 4.20 kcal
Atomic # 7 Polarization: -56.35 SS G_CDS: 0.47 Total: -55.88 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal
Atomic # 16 Polarization: 3.27 SS G_CDS: -2.56 Total: 0.71 kcal
Atomic # 17 Polarization: 0.57 SS G_CDS: -1.52 Total: -0.95 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -27.24 -7.96 -35.20 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694435655.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.679 kcal
(2) G-P(sol) polarization free energy of solvation -27.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.477 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds