Wall clock time and date at job start Mon Mar 30 2020 04:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47346 * 2 1 4 4 N 1.46503 * 109.47292 * 119.99963 * 2 1 3 5 5 C 1.36932 * 120.00039 * 294.92423 * 4 2 1 6 6 H 1.08004 * 120.00383 * 37.16326 * 5 4 2 7 7 C 1.38815 * 120.00387 * 217.17003 * 5 4 2 8 8 N 1.31624 * 119.99630 * 21.23210 * 7 5 4 9 9 Si 1.86794 * 120.00493 * 201.23557 * 7 5 4 10 10 H 1.48503 * 109.46866 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47284 * 119.99674 * 9 7 5 12 12 H 1.48506 * 109.47279 * 239.99917 * 9 7 5 13 13 C 1.46501 * 119.99950 * 114.91887 * 4 2 1 14 14 C 1.50703 * 109.47177 * 269.99804 * 13 4 2 15 15 N 1.30220 * 121.08718 * 90.02967 * 14 13 4 16 16 S 1.69962 * 105.64910 * 179.72809 * 15 14 13 17 17 C 1.72310 * 94.53184 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 127.48370 * 179.97438 * 17 16 15 19 19 N 1.31044 * 105.02905 * 0.02562 * 17 16 15 20 20 H 1.09005 * 109.47347 * 303.39046 * 1 2 3 21 21 H 1.08994 * 109.47502 * 63.39469 * 1 2 3 22 22 H 1.09004 * 109.47569 * 183.39516 * 1 2 3 23 23 H 1.09003 * 109.47146 * 239.99799 * 2 1 3 24 24 H 1.09000 * 109.47361 * 181.59602 * 3 2 1 25 25 H 1.08999 * 109.47030 * 301.59633 * 3 2 1 26 26 H 1.08997 * 109.47100 * 61.59655 * 3 2 1 27 27 H 0.96996 * 119.99988 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46739 * 150.00314 * 13 4 2 29 29 H 1.08997 * 109.47490 * 30.00371 * 13 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7754 -0.1653 2.4372 6 1 0.8332 0.3211 2.6428 7 6 2.7401 -0.2577 3.4311 8 7 4.0011 -0.4523 3.1080 9 14 2.2486 -0.1061 5.2268 10 1 0.7822 0.1080 5.3223 11 1 2.6155 -1.3517 5.9473 12 1 2.9576 1.0466 5.8384 13 6 2.7665 -1.9433 1.0646 14 6 1.8082 -3.1061 1.0922 15 7 1.2806 -3.5687 -0.0047 16 16 0.2853 -4.8605 0.4746 17 6 0.6472 -4.6963 2.1512 18 17 0.0365 -5.6559 3.4627 19 7 1.4826 -3.6891 2.2215 20 1 -0.3634 0.5656 0.8581 21 1 -0.3634 0.4602 -0.9188 22 1 -0.3634 -1.0259 0.0609 23 1 1.8933 -0.5139 -0.8900 24 1 3.1296 1.4426 -0.0286 25 1 1.6534 1.9645 -0.8753 26 1 1.7002 1.9479 0.9039 27 1 4.6752 -0.5173 3.8025 28 1 3.4715 -2.0338 1.8910 29 1 3.3112 -1.9437 0.1206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694435655.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:56 Heat of formation + Delta-G solvation = 53.893583 kcal Electronic energy + Delta-G solvation = -15820.224385 eV Core-core repulsion = 13124.571820 eV Total energy + Delta-G solvation = -2695.652565 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33967 -38.39249 -38.07156 -34.33205 -33.50392 -31.81261 -28.73355 -27.78420 -26.41694 -24.69789 -21.47650 -21.16935 -20.04951 -18.35826 -17.53702 -16.89404 -16.68852 -15.85052 -15.49579 -15.21789 -14.43433 -13.95274 -13.65009 -13.51038 -13.39752 -13.13968 -13.04255 -12.93917 -12.64527 -12.33128 -12.20038 -12.10052 -11.87924 -11.80363 -11.36469 -11.29219 -10.86417 -10.53275 -10.11355 -8.65282 -7.87848 -5.45397 -0.82907 -0.52701 0.43313 0.77100 1.42323 1.49516 1.50308 1.55999 2.51163 3.13695 3.36521 3.61662 4.29084 4.32321 4.48495 4.66204 4.71731 4.77593 4.93076 5.09697 5.14036 5.15162 5.45357 5.54678 5.66814 5.76118 6.41493 6.57198 7.11445 7.78430 8.31168 9.12151 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.009494 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.881471 B = 2948.481720 C = 4035.035629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.155 3.845 3 C -0.133 4.133 4 N -0.570 5.570 5 C -0.252 4.252 6 H 0.051 0.949 7 C -0.013 4.013 8 N -0.905 5.905 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.288 1.288 13 C 0.220 3.780 14 C 0.277 3.723 15 N -0.485 5.485 16 S 0.294 5.706 17 C 0.097 3.903 18 Cl 0.070 6.930 19 N -0.510 5.510 20 H 0.038 0.962 21 H 0.071 0.929 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.254 0.746 28 H 0.099 0.901 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -8.364 -4.451 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.050 3.950 3 C -0.191 4.191 4 N -0.289 5.289 5 C -0.383 4.383 6 H 0.068 0.932 7 C -0.211 4.211 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.215 1.215 13 C 0.087 3.913 14 C -0.014 4.014 15 N -0.317 5.317 16 S 0.429 5.571 17 C -0.216 4.216 18 Cl 0.097 6.903 19 N -0.234 5.234 20 H 0.057 0.943 21 H 0.090 0.910 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.404 -8.520 -5.444 12.532 hybrid contribution 0.215 0.218 2.279 2.299 sum -7.189 -8.302 -3.165 11.429 Atomic orbital electron populations 1.22008 0.97316 0.99629 1.00936 1.20695 0.93037 0.92874 0.88439 1.21881 0.99883 0.96735 1.00629 1.43981 1.64049 1.18405 1.02488 1.18888 0.97171 1.33857 0.88345 0.93170 1.25564 0.94430 0.99854 1.01287 1.70006 1.00002 1.52079 1.32708 0.85633 0.77963 0.76850 0.82502 1.20011 1.21771 1.21456 1.19749 0.90104 0.79016 1.02397 1.25207 0.98223 0.96961 0.81055 1.77595 1.15750 1.11447 1.26870 1.84391 1.44595 1.31593 0.96497 1.29352 0.97912 0.96251 0.98063 1.98427 1.82996 1.64420 1.44433 1.67142 1.15994 1.08900 1.31378 0.94254 0.91049 0.95450 0.92241 0.94673 0.91334 0.94114 0.93649 0.88372 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.19 71.98 0.66 -4.48 15 2 C 0.16 6.28 3.37 44.99 0.15 6.43 15 3 C -0.13 -5.08 9.11 71.98 0.66 -4.42 15 4 N -0.57 -27.20 2.35 -682.34 -1.60 -28.80 15 5 C -0.25 -13.28 8.04 84.03 0.68 -12.61 15 6 H 0.05 2.72 7.15 -2.91 -0.02 2.70 15 7 C -0.01 -0.67 4.96 84.86 0.42 -0.25 15 8 N -0.90 -50.55 11.43 21.65 0.25 -50.30 15 9 Si 0.94 44.75 29.60 68.60 2.03 46.78 15 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 15 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 13 C 0.22 10.32 5.81 85.63 0.50 10.81 15 14 C 0.28 11.81 7.15 139.39 1.00 12.81 15 15 N -0.48 -18.40 12.16 -60.72 -0.74 -19.14 15 16 S 0.29 8.70 23.81 -56.49 -1.35 7.36 15 17 C 0.10 3.28 8.50 130.36 1.11 4.39 15 18 Cl 0.07 1.86 29.33 -2.72 -0.08 1.78 15 19 N -0.51 -21.66 10.57 -192.67 -2.04 -23.70 15 20 H 0.04 1.52 7.32 -2.38 -0.02 1.51 15 21 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.03 1.05 8.14 -2.38 -0.02 1.03 15 23 H 0.06 2.30 7.77 -2.39 -0.02 2.28 15 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.04 1.69 7.50 -2.39 -0.02 1.67 15 27 H 0.25 13.80 8.31 -92.71 -0.77 13.03 15 28 H 0.10 5.23 5.48 -2.39 -0.01 5.22 15 29 H 0.07 2.89 7.88 -2.39 -0.02 2.87 15 Total: -1.00 -58.45 280.68 2.81 -55.64 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: 1.17 Total: -2.31 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.17 Total: 12.68 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.13 Total: -121.93 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 8.70 SS G_CDS: -1.35 Total: 7.36 kcal Atomic # 17 Polarization: 1.86 SS G_CDS: -0.08 Total: 1.78 kcal Total: -58.45 2.81 -55.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694435655.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.534 kcal (2) G-P(sol) polarization free energy of solvation -58.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds