Wall clock time and date at job start Mon Mar 30 2020 04:14:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.52995 * 109.47346 * 2 1
4 4 N 1.46503 * 109.47292 * 119.99963 * 2 1 3
5 5 C 1.36932 * 120.00039 * 294.92423 * 4 2 1
6 6 H 1.08004 * 120.00383 * 37.16326 * 5 4 2
7 7 C 1.38815 * 120.00387 * 217.17003 * 5 4 2
8 8 N 1.31624 * 119.99630 * 21.23210 * 7 5 4
9 9 Si 1.86794 * 120.00493 * 201.23557 * 7 5 4
10 10 H 1.48503 * 109.46866 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47284 * 119.99674 * 9 7 5
12 12 H 1.48506 * 109.47279 * 239.99917 * 9 7 5
13 13 C 1.46501 * 119.99950 * 114.91887 * 4 2 1
14 14 C 1.50703 * 109.47177 * 269.99804 * 13 4 2
15 15 N 1.30220 * 121.08718 * 90.02967 * 14 13 4
16 16 S 1.69962 * 105.64910 * 179.72809 * 15 14 13
17 17 C 1.72310 * 94.53184 * 359.97438 * 16 15 14
18 18 Cl 1.73600 * 127.48370 * 179.97438 * 17 16 15
19 19 N 1.31044 * 105.02905 * 0.02562 * 17 16 15
20 20 H 1.09005 * 109.47347 * 303.39046 * 1 2 3
21 21 H 1.08994 * 109.47502 * 63.39469 * 1 2 3
22 22 H 1.09004 * 109.47569 * 183.39516 * 1 2 3
23 23 H 1.09003 * 109.47146 * 239.99799 * 2 1 3
24 24 H 1.09000 * 109.47361 * 181.59602 * 3 2 1
25 25 H 1.08999 * 109.47030 * 301.59633 * 3 2 1
26 26 H 1.08997 * 109.47100 * 61.59655 * 3 2 1
27 27 H 0.96996 * 119.99988 * 180.02562 * 8 7 5
28 28 H 1.09003 * 109.46739 * 150.00314 * 13 4 2
29 29 H 1.08997 * 109.47490 * 30.00371 * 13 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 1.7754 -0.1653 2.4372
6 1 0.8332 0.3211 2.6428
7 6 2.7401 -0.2577 3.4311
8 7 4.0011 -0.4523 3.1080
9 14 2.2486 -0.1061 5.2268
10 1 0.7822 0.1080 5.3223
11 1 2.6155 -1.3517 5.9473
12 1 2.9576 1.0466 5.8384
13 6 2.7665 -1.9433 1.0646
14 6 1.8082 -3.1061 1.0922
15 7 1.2806 -3.5687 -0.0047
16 16 0.2853 -4.8605 0.4746
17 6 0.6472 -4.6963 2.1512
18 17 0.0365 -5.6559 3.4627
19 7 1.4826 -3.6891 2.2215
20 1 -0.3634 0.5656 0.8581
21 1 -0.3634 0.4602 -0.9188
22 1 -0.3634 -1.0259 0.0609
23 1 1.8933 -0.5139 -0.8900
24 1 3.1296 1.4426 -0.0286
25 1 1.6534 1.9645 -0.8753
26 1 1.7002 1.9479 0.9039
27 1 4.6752 -0.5173 3.8025
28 1 3.4715 -2.0338 1.8910
29 1 3.3112 -1.9437 0.1206
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000694435655.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:14:56
Heat of formation + Delta-G solvation = 53.893583 kcal
Electronic energy + Delta-G solvation = -15820.224385 eV
Core-core repulsion = 13124.571820 eV
Total energy + Delta-G solvation = -2695.652565 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 261.040 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.33967 -38.39249 -38.07156 -34.33205 -33.50392 -31.81261 -28.73355 -27.78420
-26.41694 -24.69789 -21.47650 -21.16935 -20.04951 -18.35826 -17.53702 -16.89404
-16.68852 -15.85052 -15.49579 -15.21789 -14.43433 -13.95274 -13.65009 -13.51038
-13.39752 -13.13968 -13.04255 -12.93917 -12.64527 -12.33128 -12.20038 -12.10052
-11.87924 -11.80363 -11.36469 -11.29219 -10.86417 -10.53275 -10.11355 -8.65282
-7.87848 -5.45397 -0.82907 -0.52701 0.43313 0.77100 1.42323 1.49516
1.50308 1.55999 2.51163 3.13695 3.36521 3.61662 4.29084 4.32321
4.48495 4.66204 4.71731 4.77593 4.93076 5.09697 5.14036 5.15162
5.45357 5.54678 5.66814 5.76118 6.41493 6.57198 7.11445 7.78430
8.31168 9.12151
Molecular weight = 261.04amu
Principal moments of inertia in cm(-1)
A = 0.017260 B = 0.009494 C = 0.006938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1621.881471 B = 2948.481720 C = 4035.035629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.155 3.845
3 C -0.133 4.133
4 N -0.570 5.570
5 C -0.252 4.252
6 H 0.051 0.949
7 C -0.013 4.013
8 N -0.905 5.905
9 Si 0.942 3.058
10 H -0.275 1.275
11 H -0.291 1.291
12 H -0.288 1.288
13 C 0.220 3.780
14 C 0.277 3.723
15 N -0.485 5.485
16 S 0.294 5.706
17 C 0.097 3.903
18 Cl 0.070 6.930
19 N -0.510 5.510
20 H 0.038 0.962
21 H 0.071 0.929
22 H 0.026 0.974
23 H 0.059 0.941
24 H 0.034 0.966
25 H 0.068 0.932
26 H 0.040 0.960
27 H 0.254 0.746
28 H 0.099 0.901
29 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.248 -8.364 -4.451 11.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.050 3.950
3 C -0.191 4.191
4 N -0.289 5.289
5 C -0.383 4.383
6 H 0.068 0.932
7 C -0.211 4.211
8 N -0.548 5.548
9 Si 0.771 3.229
10 H -0.200 1.200
11 H -0.218 1.218
12 H -0.215 1.215
13 C 0.087 3.913
14 C -0.014 4.014
15 N -0.317 5.317
16 S 0.429 5.571
17 C -0.216 4.216
18 Cl 0.097 6.903
19 N -0.234 5.234
20 H 0.057 0.943
21 H 0.090 0.910
22 H 0.046 0.954
23 H 0.078 0.922
24 H 0.053 0.947
25 H 0.087 0.913
26 H 0.059 0.941
27 H 0.064 0.936
28 H 0.116 0.884
29 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -7.404 -8.520 -5.444 12.532
hybrid contribution 0.215 0.218 2.279 2.299
sum -7.189 -8.302 -3.165 11.429
Atomic orbital electron populations
1.22008 0.97316 0.99629 1.00936 1.20695 0.93037 0.92874 0.88439
1.21881 0.99883 0.96735 1.00629 1.43981 1.64049 1.18405 1.02488
1.18888 0.97171 1.33857 0.88345 0.93170 1.25564 0.94430 0.99854
1.01287 1.70006 1.00002 1.52079 1.32708 0.85633 0.77963 0.76850
0.82502 1.20011 1.21771 1.21456 1.19749 0.90104 0.79016 1.02397
1.25207 0.98223 0.96961 0.81055 1.77595 1.15750 1.11447 1.26870
1.84391 1.44595 1.31593 0.96497 1.29352 0.97912 0.96251 0.98063
1.98427 1.82996 1.64420 1.44433 1.67142 1.15994 1.08900 1.31378
0.94254 0.91049 0.95450 0.92241 0.94673 0.91334 0.94114 0.93649
0.88372 0.91615
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.14 9.19 71.98 0.66 -4.48 15
2 C 0.16 6.28 3.37 44.99 0.15 6.43 15
3 C -0.13 -5.08 9.11 71.98 0.66 -4.42 15
4 N -0.57 -27.20 2.35 -682.34 -1.60 -28.80 15
5 C -0.25 -13.28 8.04 84.03 0.68 -12.61 15
6 H 0.05 2.72 7.15 -2.91 -0.02 2.70 15
7 C -0.01 -0.67 4.96 84.86 0.42 -0.25 15
8 N -0.90 -50.55 11.43 21.65 0.25 -50.30 15
9 Si 0.94 44.75 29.60 68.60 2.03 46.78 15
10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15
11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 15
12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15
13 C 0.22 10.32 5.81 85.63 0.50 10.81 15
14 C 0.28 11.81 7.15 139.39 1.00 12.81 15
15 N -0.48 -18.40 12.16 -60.72 -0.74 -19.14 15
16 S 0.29 8.70 23.81 -56.49 -1.35 7.36 15
17 C 0.10 3.28 8.50 130.36 1.11 4.39 15
18 Cl 0.07 1.86 29.33 -2.72 -0.08 1.78 15
19 N -0.51 -21.66 10.57 -192.67 -2.04 -23.70 15
20 H 0.04 1.52 7.32 -2.38 -0.02 1.51 15
21 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15
22 H 0.03 1.05 8.14 -2.38 -0.02 1.03 15
23 H 0.06 2.30 7.77 -2.39 -0.02 2.28 15
24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15
25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15
26 H 0.04 1.69 7.50 -2.39 -0.02 1.67 15
27 H 0.25 13.80 8.31 -92.71 -0.77 13.03 15
28 H 0.10 5.23 5.48 -2.39 -0.01 5.22 15
29 H 0.07 2.89 7.88 -2.39 -0.02 2.87 15
Total: -1.00 -58.45 280.68 2.81 -55.64
By element:
Atomic # 1 Polarization: -3.47 SS G_CDS: 1.17 Total: -2.31 kcal
Atomic # 6 Polarization: 7.51 SS G_CDS: 5.17 Total: 12.68 kcal
Atomic # 7 Polarization: -117.80 SS G_CDS: -4.13 Total: -121.93 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal
Atomic # 16 Polarization: 8.70 SS G_CDS: -1.35 Total: 7.36 kcal
Atomic # 17 Polarization: 1.86 SS G_CDS: -0.08 Total: 1.78 kcal
Total: -58.45 2.81 -55.64 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694435655.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.534 kcal
(2) G-P(sol) polarization free energy of solvation -58.448 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.894 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds