Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40167 * 126.29946 * 2 1 4 4 C 1.29925 * 108.07544 * 179.97438 * 3 2 1 5 5 O 1.35593 * 125.65837 * 179.97438 * 4 3 2 6 6 N 1.37678 * 108.68842 * 0.02562 * 4 3 2 7 7 C 1.40217 * 125.84480 * 179.97438 * 6 4 3 8 8 C 1.39244 * 119.94219 * 180.02562 * 7 6 4 9 9 C 1.38497 * 120.43475 * 180.02562 * 8 7 6 10 10 C 1.37684 * 120.31547 * 0.24334 * 9 8 7 11 11 C 1.40732 * 119.87449 * 359.50987 * 10 9 8 12 12 C 1.41402 * 120.21396 * 180.25660 * 11 10 9 13 13 H 1.08006 * 120.00400 * 204.59275 * 12 11 10 14 14 C 1.39932 * 120.00026 * 24.59368 * 12 11 10 15 15 N 1.30827 * 119.99824 * 17.74803 * 14 12 11 16 16 Si 1.86799 * 120.00132 * 197.74908 * 14 12 11 17 17 H 1.48501 * 109.47412 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47093 * 119.99833 * 16 14 12 19 19 H 1.48503 * 109.47270 * 239.99808 * 16 14 12 20 20 C 1.38198 * 119.94263 * 0.04992 * 7 6 4 21 21 C 1.34802 * 108.31205 * 0.26167 * 6 4 3 22 22 O 1.21816 * 126.23701 * 179.71553 * 21 6 4 23 23 H 1.08998 * 109.47232 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46974 * 119.97742 * 1 2 3 25 25 H 1.09001 * 109.47228 * 239.97726 * 1 2 3 26 26 H 0.96700 * 113.99859 * 0.02907 * 5 4 3 27 27 H 1.07997 * 119.78513 * 0.02562 * 8 7 6 28 28 H 1.08003 * 119.84267 * 179.97438 * 9 8 7 29 29 H 1.07996 * 120.06222 * 179.73958 * 10 9 8 30 30 H 0.97003 * 119.99889 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.15801 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2948 1.1297 0.0000 4 6 3.5289 0.7233 0.0006 5 8 4.6242 1.5226 0.0002 6 7 3.5400 -0.6534 0.0003 7 6 4.6832 -1.4653 0.0003 8 6 4.5513 -2.8514 -0.0005 9 6 5.6736 -3.6630 0.0000 10 6 6.9332 -3.1071 0.0062 11 6 7.0819 -1.7077 0.0018 12 6 8.3721 -1.1292 0.0027 13 1 8.5161 -0.1309 0.3888 14 6 9.4625 -1.8501 -0.4967 15 7 9.2626 -2.8878 -1.2680 16 14 11.2035 -1.3310 -0.0622 17 1 11.1586 -0.1354 0.8175 18 1 11.8891 -2.4417 0.6460 19 1 11.9470 -1.0027 -1.3051 20 6 5.9390 -0.8883 0.0015 21 6 2.2638 -1.0873 -0.0062 22 8 1.8983 -2.2493 -0.0132 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5135 -0.8902 25 1 -0.3634 -0.5142 0.8898 26 1 4.4212 2.4680 0.0000 27 1 3.5674 -3.2967 -0.0015 28 1 5.5601 -4.7371 -0.0002 29 1 7.8055 -3.7439 0.0108 30 1 10.0184 -3.3878 -1.6139 31 1 6.0422 0.1868 0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700703088.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = 39.981520 kcal Electronic energy + Delta-G solvation = -19085.899332 eV Core-core repulsion = 15949.323473 eV Total energy + Delta-G solvation = -3136.575859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.33487 -38.23618 -37.74587 -36.43795 -34.91923 -33.35657 -31.19561 -29.96232 -28.42967 -26.59885 -25.45746 -22.96153 -22.25622 -20.67217 -20.23501 -18.50071 -17.93872 -16.86133 -16.44864 -15.69407 -15.35089 -14.99911 -14.81154 -14.27053 -14.08770 -13.45051 -13.23566 -13.05672 -12.53383 -12.36349 -12.00192 -11.77602 -11.51744 -11.24625 -11.19015 -10.96087 -10.67066 -10.23821 -10.07883 -9.71960 -9.29267 -9.18950 -8.26760 -7.59652 -7.13839 -6.83636 -4.45308 2.04488 2.05862 2.47019 2.52805 2.71935 3.04282 3.09318 3.12140 3.38638 3.88110 4.47489 4.55789 4.61930 5.32436 5.36452 5.53893 5.56342 5.59565 6.11458 6.31425 6.42701 6.62829 6.91846 6.94567 7.08504 7.16013 7.16980 7.51776 7.64186 7.91052 7.95135 8.05888 8.10781 8.37027 8.54039 8.79527 8.83478 10.11326 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.035158 B = 0.005546 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.211281 B = 5047.083219 C = 5759.579341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.450 5.450 3 N -0.349 5.349 4 C 0.484 3.516 5 O -0.418 6.418 6 N -0.472 5.472 7 C 0.145 3.855 8 C -0.244 4.244 9 C -0.090 4.090 10 C -0.163 4.163 11 C 0.123 3.877 12 C -0.458 4.458 13 H 0.081 0.919 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.910 3.090 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.233 4.233 21 C 0.656 3.344 22 O -0.537 6.537 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.417 0.583 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.281 0.719 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 7.054 1.709 10.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.276 5.276 3 N -0.195 5.195 4 C 0.170 3.830 5 O -0.212 6.212 6 N -0.198 5.198 7 C 0.056 3.944 8 C -0.265 4.265 9 C -0.109 4.109 10 C -0.183 4.183 11 C 0.119 3.881 12 C -0.488 4.488 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.734 3.266 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.200 1.200 20 C -0.254 4.254 21 C 0.357 3.643 22 O -0.409 6.409 23 H 0.110 0.890 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.274 0.726 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.494 6.404 1.562 10.752 hybrid contribution 1.120 0.246 0.022 1.147 sum -7.374 6.650 1.584 10.056 Atomic orbital electron populations 1.21506 0.72333 1.03797 1.02728 1.48438 1.06277 1.01873 1.71007 1.77301 0.96470 1.10042 1.35665 1.20731 0.86536 0.81988 0.93769 1.85200 1.23435 1.22402 1.90123 1.43362 1.07903 1.03835 1.64652 1.17531 0.82283 0.89412 1.05172 1.20663 0.99645 0.90445 1.15711 1.20583 0.92595 0.97511 1.00228 1.21479 0.95886 0.95522 1.05373 1.17383 0.91730 0.91355 0.87593 1.19561 0.91267 1.01862 1.36071 0.90132 1.25920 1.01793 0.94010 0.92474 1.69831 1.33854 1.15700 1.22180 0.86240 0.81208 0.79871 0.79299 1.18323 1.19640 1.19961 1.20996 0.89624 0.99139 1.15687 1.16419 0.80125 0.85713 0.82088 1.90990 1.76666 1.15054 1.58221 0.89033 0.90975 0.90972 0.72610 0.85766 0.88357 0.85956 0.90754 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 1.51 11.40 59.85 0.68 2.20 16 2 N -0.45 -7.40 4.02 -71.98 -0.29 -7.69 16 3 N -0.35 -5.51 12.55 29.74 0.37 -5.14 16 4 C 0.48 8.38 8.96 -88.39 -0.79 7.58 16 5 O -0.42 -5.98 10.74 -18.47 -0.20 -6.18 16 6 N -0.47 -9.95 2.96 -66.34 -0.20 -10.15 16 7 C 0.15 3.48 6.61 -83.66 -0.55 2.92 16 8 C -0.24 -5.95 9.39 -39.11 -0.37 -6.32 16 9 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 10 C -0.16 -4.20 8.69 -38.84 -0.34 -4.54 16 11 C 0.12 3.22 5.57 -106.85 -0.60 2.63 16 12 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 13 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 14 C 0.08 1.86 5.14 -17.35 -0.09 1.77 16 15 N -0.79 -19.95 10.96 55.55 0.61 -19.34 16 16 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 C -0.23 -5.72 9.15 -38.70 -0.35 -6.08 16 21 C 0.66 13.40 8.47 -86.77 -0.74 12.67 16 22 O -0.54 -12.08 15.05 5.09 0.08 -12.00 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.42 3.17 9.06 45.56 0.41 3.58 16 27 H 0.12 3.04 5.41 -52.49 -0.28 2.76 16 28 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 29 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16 30 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 31 H 0.12 2.75 5.20 -52.49 -0.27 2.48 16 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -31.69 274.18 -6.11 -37.80 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -1.71 Total: 7.40 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.88 Total: -1.89 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.50 Total: -42.31 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.12 Total: -18.18 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.69 -6.11 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700703088.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.783 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds