Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40167 * 126.29946 * 2 1 4 4 C 1.29925 * 108.07544 * 179.97438 * 3 2 1 5 5 O 1.35593 * 125.65837 * 179.97438 * 4 3 2 6 6 N 1.37678 * 108.68842 * 0.02562 * 4 3 2 7 7 C 1.40217 * 125.84480 * 179.97438 * 6 4 3 8 8 C 1.39244 * 119.94219 * 180.02562 * 7 6 4 9 9 C 1.38497 * 120.43475 * 180.02562 * 8 7 6 10 10 C 1.37684 * 120.31547 * 0.24334 * 9 8 7 11 11 C 1.40732 * 119.87449 * 359.50987 * 10 9 8 12 12 C 1.41402 * 120.21396 * 180.25660 * 11 10 9 13 13 H 1.08006 * 120.00400 * 204.59275 * 12 11 10 14 14 C 1.39932 * 120.00026 * 24.59368 * 12 11 10 15 15 N 1.30827 * 119.99824 * 17.74803 * 14 12 11 16 16 Si 1.86799 * 120.00132 * 197.74908 * 14 12 11 17 17 H 1.48501 * 109.47412 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47093 * 119.99833 * 16 14 12 19 19 H 1.48503 * 109.47270 * 239.99808 * 16 14 12 20 20 C 1.38198 * 119.94263 * 0.04992 * 7 6 4 21 21 C 1.34802 * 108.31205 * 0.26167 * 6 4 3 22 22 O 1.21816 * 126.23701 * 179.71553 * 21 6 4 23 23 H 1.08998 * 109.47232 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46974 * 119.97742 * 1 2 3 25 25 H 1.09001 * 109.47228 * 239.97726 * 1 2 3 26 26 H 0.96700 * 113.99859 * 0.02907 * 5 4 3 27 27 H 1.07997 * 119.78513 * 0.02562 * 8 7 6 28 28 H 1.08003 * 119.84267 * 179.97438 * 9 8 7 29 29 H 1.07996 * 120.06222 * 179.73958 * 10 9 8 30 30 H 0.97003 * 119.99889 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.15801 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2948 1.1297 0.0000 4 6 3.5289 0.7233 0.0006 5 8 4.6242 1.5226 0.0002 6 7 3.5400 -0.6534 0.0003 7 6 4.6832 -1.4653 0.0003 8 6 4.5513 -2.8514 -0.0005 9 6 5.6736 -3.6630 0.0000 10 6 6.9332 -3.1071 0.0062 11 6 7.0819 -1.7077 0.0018 12 6 8.3721 -1.1292 0.0027 13 1 8.5161 -0.1309 0.3888 14 6 9.4625 -1.8501 -0.4967 15 7 9.2626 -2.8878 -1.2680 16 14 11.2035 -1.3310 -0.0622 17 1 11.1586 -0.1354 0.8175 18 1 11.8891 -2.4417 0.6460 19 1 11.9470 -1.0027 -1.3051 20 6 5.9390 -0.8883 0.0015 21 6 2.2638 -1.0873 -0.0062 22 8 1.8983 -2.2493 -0.0132 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5135 -0.8902 25 1 -0.3634 -0.5142 0.8898 26 1 4.4212 2.4680 0.0000 27 1 3.5674 -3.2967 -0.0015 28 1 5.5601 -4.7371 -0.0002 29 1 7.8055 -3.7439 0.0108 30 1 10.0184 -3.3878 -1.6139 31 1 6.0422 0.1868 0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700703088.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = 17.255375 kcal Electronic energy + Delta-G solvation = -19086.884812 eV Core-core repulsion = 15949.323473 eV Total energy + Delta-G solvation = -3137.561338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.79569 -39.60104 -39.50366 -37.89550 -36.53113 -35.09626 -32.54408 -31.87007 -30.13844 -27.83237 -27.33834 -24.48468 -23.84430 -22.31204 -21.93825 -20.05260 -19.47231 -18.29534 -17.96494 -17.40435 -17.02855 -16.56520 -16.51894 -15.48234 -15.43684 -15.08972 -14.75381 -14.68292 -14.12882 -13.72879 -13.44341 -13.37026 -13.17412 -12.88754 -12.74271 -12.49670 -12.30437 -11.91214 -11.73180 -11.53241 -11.04468 -11.01077 -9.63930 -9.51713 -8.97338 -8.67405 -6.40405 0.49725 0.65482 0.88838 0.93359 1.25647 1.42255 1.48564 1.57923 1.71922 2.22109 2.69929 3.15451 3.32080 3.64656 4.02388 4.39681 4.49631 4.50316 4.63585 4.73320 4.78519 4.99364 5.09136 5.19326 5.25744 5.32723 5.56665 5.80433 5.97544 6.02960 6.18301 6.23568 6.58587 6.64999 6.85125 6.88112 6.92315 8.30380 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.035158 B = 0.005546 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.211281 B = 5047.083219 C = 5759.579341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.440 5.440 3 N -0.323 5.323 4 C 0.479 3.521 5 O -0.421 6.421 6 N -0.490 5.490 7 C 0.150 3.850 8 C -0.261 4.261 9 C -0.088 4.088 10 C -0.187 4.187 11 C 0.098 3.902 12 C -0.486 4.486 13 H 0.084 0.916 14 C 0.037 3.963 15 N -0.820 5.820 16 Si 0.986 3.014 17 H -0.255 1.255 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.243 4.243 21 C 0.641 3.359 22 O -0.568 6.568 23 H 0.123 0.877 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.445 0.555 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.291 0.709 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 8.728 1.885 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.265 5.265 3 N -0.168 5.168 4 C 0.166 3.834 5 O -0.219 6.219 6 N -0.215 5.215 7 C 0.059 3.941 8 C -0.282 4.282 9 C -0.107 4.107 10 C -0.207 4.207 11 C 0.094 3.906 12 C -0.515 4.515 13 H 0.102 0.898 14 C -0.179 4.179 15 N -0.445 5.445 16 Si 0.806 3.194 17 H -0.178 1.178 18 H -0.190 1.190 19 H -0.191 1.191 20 C -0.264 4.264 21 C 0.341 3.659 22 O -0.443 6.443 23 H 0.142 0.858 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.308 0.692 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.627 8.154 1.736 11.997 hybrid contribution 1.022 -0.190 -0.060 1.041 sum -7.605 7.963 1.676 11.138 Atomic orbital electron populations 1.22007 0.69213 1.06295 1.03932 1.48858 1.07651 1.00693 1.69302 1.77356 0.95714 1.09232 1.34546 1.20862 0.87417 0.81045 0.94090 1.85119 1.22714 1.24415 1.89657 1.43357 1.07520 1.05305 1.65316 1.17561 0.83264 0.89700 1.03527 1.20774 0.99525 0.91140 1.16714 1.20804 0.92046 0.98739 0.99090 1.21444 0.96082 0.95584 1.07576 1.17762 0.92829 0.91952 0.88021 1.19846 0.91982 1.02534 1.37121 0.89777 1.26809 1.05788 0.93690 0.91602 1.69878 1.35652 1.16524 1.22474 0.85099 0.75478 0.79598 0.79199 1.17816 1.18984 1.19087 1.21133 0.89514 0.99817 1.15951 1.16671 0.80392 0.86247 0.82584 1.90946 1.77196 1.16423 1.59722 0.85835 0.89892 0.89769 0.69249 0.85979 0.86240 0.87017 0.89833 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.39 11.40 127.77 1.46 3.85 16 2 N -0.44 -13.58 4.02 -499.72 -2.01 -15.59 16 3 N -0.32 -9.41 12.55 -173.88 -2.18 -11.59 16 4 C 0.48 15.85 8.96 179.57 1.61 17.45 16 5 O -0.42 -11.27 10.74 -89.02 -0.96 -12.22 16 6 N -0.49 -20.42 2.96 -591.96 -1.75 -22.18 16 7 C 0.15 7.26 6.61 38.03 0.25 7.51 16 8 C -0.26 -12.98 9.39 22.57 0.21 -12.76 16 9 C -0.09 -4.33 10.02 22.20 0.22 -4.11 16 10 C -0.19 -9.92 8.69 22.75 0.20 -9.73 16 11 C 0.10 5.24 5.57 -21.31 -0.12 5.12 16 12 C -0.49 -25.28 9.05 23.46 0.21 -25.07 16 13 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 14 C 0.04 1.80 5.14 85.25 0.44 2.24 16 15 N -0.82 -41.69 10.96 21.82 0.24 -41.45 16 16 Si 0.99 36.49 29.59 68.60 2.03 38.52 16 17 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 18 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 19 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 20 C -0.24 -12.05 9.15 22.84 0.21 -11.85 16 21 C 0.64 25.82 8.47 179.00 1.52 27.33 16 22 O -0.57 -25.66 15.05 -4.72 -0.07 -25.73 16 23 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.44 5.56 9.06 -74.06 -0.67 4.89 16 27 H 0.12 6.11 5.41 -2.91 -0.02 6.10 16 28 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 29 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 30 H 0.29 13.25 8.30 -92.71 -0.77 12.49 16 31 H 0.13 6.08 5.20 -2.91 -0.02 6.06 16 Total: -1.00 -68.93 274.18 2.03 -66.90 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.53 Total: 23.36 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 6.21 Total: -0.02 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -5.71 Total: -90.81 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.03 Total: -37.95 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Total: -68.93 2.03 -66.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700703088.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.156 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds