Wall clock time and date at job start Mon Mar 30 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48493 * 109.47436 * 270.00152 * 3 2 1 5 5 H 1.48494 * 109.46744 * 30.00414 * 3 2 1 6 6 H 1.48508 * 109.46707 * 150.00146 * 3 2 1 7 7 C 1.37883 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99781 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99765 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40456 * 66.45762 * 9 7 2 11 11 O 1.42093 * 106.39953 * 293.53233 * 9 7 2 12 12 N 1.65597 * 107.21562 * 179.97438 * 9 7 2 13 13 C 1.48151 * 127.83930 * 90.01996 * 12 9 7 14 14 C 1.54386 * 104.61529 * 140.43396 * 13 12 9 15 15 H 1.09007 * 117.62076 * 244.78520 * 14 13 12 16 16 C 1.53002 * 118.89943 * 87.21925 * 14 13 12 17 17 C 1.53002 * 60.55352 * 268.89693 * 16 14 13 18 18 C 1.50697 * 119.54017 * 248.22590 * 17 16 14 19 19 O 1.20833 * 119.99747 * 70.71253 * 18 17 16 20 20 O 1.34230 * 120.00262 * 250.42875 * 18 17 16 21 21 C 1.48149 * 127.83900 * 270.04804 * 12 9 7 22 22 H 0.97001 * 119.99549 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.40497 * 21.65779 * 13 12 9 24 24 H 1.08990 * 110.41130 * 259.22411 * 13 12 9 25 25 H 1.09004 * 117.44418 * 161.25178 * 16 14 13 26 26 H 1.08996 * 117.44177 * 16.54445 * 16 14 13 27 27 H 0.96699 * 116.99771 * 180.27188 * 20 18 17 28 28 H 1.08997 * 110.40558 * 100.78192 * 21 12 9 29 29 H 1.08992 * 110.40437 * 338.35094 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6525 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1674 -0.6505 1.2504 11 8 4.1682 -0.6490 -1.2491 12 7 4.2567 -2.7759 0.0000 13 6 4.5265 -3.6436 -1.1701 14 6 5.7751 -4.4591 -0.7706 15 1 6.6880 -4.2991 -1.3444 16 6 5.5882 -5.7676 0.0000 17 6 5.7736 -4.4598 0.7722 18 6 7.0341 -4.2392 1.5680 19 8 8.0838 -4.0551 0.9985 20 8 6.9899 -4.2415 2.9096 21 6 4.5243 -3.6445 1.1699 22 1 -0.4849 0.8401 0.0004 23 1 4.7343 -3.0382 -2.0523 24 1 3.6818 -4.3073 -1.3540 25 1 6.4189 -6.4734 0.0005 26 1 4.5936 -6.2136 -0.0011 27 1 7.8233 -4.0917 3.3765 28 1 3.6791 -4.3085 1.3515 29 1 4.7303 -3.0398 2.0530 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703462866.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:06 Heat of formation + Delta-G solvation = -125.284296 kcal Electronic energy + Delta-G solvation = -18167.261620 eV Core-core repulsion = 14990.837403 eV Total energy + Delta-G solvation = -3176.424217 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76552 -38.80726 -36.11095 -35.71752 -34.50375 -33.17750 -32.97426 -28.75286 -26.43254 -24.98493 -24.18402 -21.17756 -19.73001 -18.81613 -17.93634 -17.66956 -17.03680 -16.34041 -15.71873 -15.18084 -14.93537 -14.52567 -14.06065 -13.44346 -13.38776 -13.04886 -12.81411 -12.30536 -12.17904 -11.80116 -11.57396 -11.44323 -11.26532 -11.00047 -10.80604 -10.68398 -10.54122 -10.30120 -10.12827 -9.81687 -9.24376 -9.21664 -8.47098 -6.84130 -5.38513 1.83640 2.08685 2.90506 3.04667 3.15158 3.24064 3.33660 3.92149 4.14965 4.34969 4.41898 4.55446 4.80429 5.12521 5.16399 5.36355 5.47142 5.53768 5.68599 5.82779 5.89498 5.96133 6.01284 6.14471 6.42979 6.56787 7.01723 7.44996 7.87251 8.17656 8.66239 10.28132 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.034968 B = 0.007093 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.535736 B = 3946.537239 C = 4158.171990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.153 3.847 3 Si 0.800 3.200 4 H -0.245 1.245 5 H -0.253 1.253 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.123 0.877 9 S 2.691 3.309 10 O -1.001 7.001 11 O -1.003 7.003 12 N -1.015 6.015 13 C 0.147 3.853 14 C -0.130 4.130 15 H 0.130 0.870 16 C -0.104 4.104 17 C -0.174 4.174 18 C 0.529 3.471 19 O -0.516 6.516 20 O -0.506 6.506 21 C 0.167 3.833 22 H 0.281 0.719 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.410 0.590 28 H 0.083 0.917 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 -11.026 1.830 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.066 4.066 3 Si 0.620 3.380 4 H -0.169 1.169 5 H -0.177 1.177 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.140 0.860 9 S 2.795 3.205 10 O -0.991 6.991 11 O -0.993 6.993 12 N -0.849 5.849 13 C 0.021 3.979 14 C -0.150 4.150 15 H 0.148 0.852 16 C -0.141 4.141 17 C -0.177 4.177 18 C 0.372 3.628 19 O -0.405 6.405 20 O -0.317 6.317 21 C 0.041 3.959 22 H 0.092 0.908 23 H 0.114 0.886 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.107 -10.062 1.474 13.651 hybrid contribution 0.187 0.599 0.406 0.747 sum 9.294 -9.463 1.880 13.396 Atomic orbital electron populations 1.69982 1.06539 1.29109 1.39406 1.24420 0.94804 0.98781 0.88637 0.87890 0.83607 0.84584 0.81948 1.16895 1.17719 1.14247 1.30496 1.15373 1.02248 1.66804 0.85951 1.01060 0.77159 0.68990 0.73259 1.93461 1.85466 1.74921 1.45301 1.93404 1.85440 1.74954 1.45510 1.59639 1.84442 1.29507 1.11350 1.21483 0.94196 0.92490 0.89682 1.24091 1.01705 0.98848 0.90349 0.85219 1.23187 1.04508 0.89112 0.97289 1.22246 0.94703 1.05431 0.95368 1.21858 0.88917 0.71466 0.80576 1.90708 1.32417 1.45650 1.71698 1.84526 1.42760 1.83882 1.20568 1.21222 0.92759 0.92246 0.89709 0.90817 0.88604 0.90529 0.87367 0.86833 0.73118 0.89940 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.57 13.96 55.43 0.77 -22.79 15 2 C 0.15 4.39 5.47 -17.82 -0.10 4.29 15 3 Si 0.80 20.55 26.54 -169.99 -4.51 16.04 15 4 H -0.25 -6.15 7.11 56.52 0.40 -5.74 15 5 H -0.25 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.22 -5.79 5.61 56.52 0.32 -5.47 15 7 C -1.01 -28.16 10.29 30.60 0.31 -27.84 15 8 H 0.12 3.40 8.06 -52.49 -0.42 2.98 15 9 S 2.69 67.90 4.52 -107.50 -0.49 67.41 15 10 O -1.00 -27.08 15.42 -57.17 -0.88 -27.96 15 11 O -1.00 -26.88 16.23 -57.17 -0.93 -27.81 15 12 N -1.02 -19.84 3.72 -110.29 -0.41 -20.25 15 13 C 0.15 2.27 7.02 -2.41 -0.02 2.26 15 14 C -0.13 -1.69 6.75 -89.22 -0.60 -2.30 15 15 H 0.13 1.64 8.14 -51.93 -0.42 1.22 15 16 C -0.10 -1.03 9.92 -26.73 -0.27 -1.30 15 17 C -0.17 -2.41 2.88 -154.26 -0.44 -2.86 15 18 C 0.53 7.64 7.88 36.00 0.28 7.92 15 19 O -0.52 -8.64 17.57 -18.76 -0.33 -8.97 15 20 O -0.51 -5.87 13.35 -39.26 -0.52 -6.40 15 21 C 0.17 2.71 6.81 -2.41 -0.02 2.69 15 22 H 0.28 7.31 8.31 -40.82 -0.34 6.97 15 23 H 0.10 1.51 7.73 -51.93 -0.40 1.11 15 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.11 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.11 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.41 2.80 9.10 45.56 0.41 3.22 15 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 29 H 0.10 1.65 7.56 -51.93 -0.39 1.25 15 LS Contribution 269.61 15.07 4.06 4.06 Total: -1.00 -35.32 269.61 -6.21 -41.53 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.14 Total: 2.26 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.84 Total: -17.13 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.36 Total: -43.04 kcal Atomic # 8 Polarization: -68.48 SS G_CDS: -2.66 Total: -71.14 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.51 Total: 16.04 kcal Atomic # 16 Polarization: 67.90 SS G_CDS: -0.49 Total: 67.41 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.32 -6.21 -41.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703462866.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.753 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds