Wall clock time and date at job start Mon Mar 30 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48493 * 109.47436 * 270.00152 * 3 2 1 5 5 H 1.48494 * 109.46744 * 30.00414 * 3 2 1 6 6 H 1.48508 * 109.46707 * 150.00146 * 3 2 1 7 7 C 1.37883 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99781 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99765 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40456 * 66.45762 * 9 7 2 11 11 O 1.42093 * 106.39953 * 293.53233 * 9 7 2 12 12 N 1.65597 * 107.21562 * 179.97438 * 9 7 2 13 13 C 1.48151 * 127.83930 * 90.01996 * 12 9 7 14 14 C 1.54386 * 104.61529 * 140.43396 * 13 12 9 15 15 H 1.09007 * 117.62076 * 244.78520 * 14 13 12 16 16 C 1.53002 * 118.89943 * 87.21925 * 14 13 12 17 17 C 1.53002 * 60.55352 * 268.89693 * 16 14 13 18 18 C 1.50697 * 119.54017 * 248.22590 * 17 16 14 19 19 O 1.20833 * 119.99747 * 70.71253 * 18 17 16 20 20 O 1.34230 * 120.00262 * 250.42875 * 18 17 16 21 21 C 1.48149 * 127.83900 * 270.04804 * 12 9 7 22 22 H 0.97001 * 119.99549 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.40497 * 21.65779 * 13 12 9 24 24 H 1.08990 * 110.41130 * 259.22411 * 13 12 9 25 25 H 1.09004 * 117.44418 * 161.25178 * 16 14 13 26 26 H 1.08996 * 117.44177 * 16.54445 * 16 14 13 27 27 H 0.96699 * 116.99771 * 180.27188 * 20 18 17 28 28 H 1.08997 * 110.40558 * 100.78192 * 21 12 9 29 29 H 1.08992 * 110.40437 * 338.35094 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6525 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1674 -0.6505 1.2504 11 8 4.1682 -0.6490 -1.2491 12 7 4.2567 -2.7759 0.0000 13 6 4.5265 -3.6436 -1.1701 14 6 5.7751 -4.4591 -0.7706 15 1 6.6880 -4.2991 -1.3444 16 6 5.5882 -5.7676 0.0000 17 6 5.7736 -4.4598 0.7722 18 6 7.0341 -4.2392 1.5680 19 8 8.0838 -4.0551 0.9985 20 8 6.9899 -4.2415 2.9096 21 6 4.5243 -3.6445 1.1699 22 1 -0.4849 0.8401 0.0004 23 1 4.7343 -3.0382 -2.0523 24 1 3.6818 -4.3073 -1.3540 25 1 6.4189 -6.4734 0.0005 26 1 4.5936 -6.2136 -0.0011 27 1 7.8233 -4.0917 3.3765 28 1 3.6791 -4.3085 1.3515 29 1 4.7303 -3.0398 2.0530 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703462866.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:06 Heat of formation + Delta-G solvation = -154.423617 kcal Electronic energy + Delta-G solvation = -18168.525196 eV Core-core repulsion = 14990.837403 eV Total energy + Delta-G solvation = -3177.687792 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84284 -39.91480 -37.78058 -37.15960 -36.57499 -35.22834 -34.34894 -29.92650 -28.58072 -26.16025 -25.37928 -22.18022 -20.86616 -20.72491 -19.45466 -18.96407 -18.81254 -17.78064 -17.08462 -16.78847 -16.54835 -15.96012 -15.42137 -15.20781 -14.97284 -14.74774 -14.09150 -13.87345 -13.52379 -13.41236 -13.08725 -12.94318 -12.78376 -12.64427 -12.62703 -12.40398 -12.00722 -11.84262 -11.38499 -11.35033 -11.24666 -11.02132 -9.99461 -8.99760 -7.55688 -0.04518 1.01508 1.02475 1.11111 1.18329 1.86027 1.95782 2.30722 2.39929 2.44305 3.24536 3.35291 3.45185 3.77171 3.93564 4.14981 4.22445 4.46984 4.55245 4.76378 4.79739 4.81670 4.95649 5.00160 5.23937 5.38818 5.47103 5.50941 5.99843 6.50182 6.93900 8.17765 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.034968 B = 0.007093 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.535736 B = 3946.537239 C = 4158.171990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.111 3.889 3 Si 0.819 3.181 4 H -0.238 1.238 5 H -0.216 1.216 6 H -0.233 1.233 7 C -1.034 5.034 8 H 0.111 0.889 9 S 2.712 3.288 10 O -1.026 7.026 11 O -1.025 7.025 12 N -1.024 6.024 13 C 0.137 3.863 14 C -0.136 4.136 15 H 0.131 0.869 16 C -0.058 4.058 17 C -0.194 4.194 18 C 0.530 3.470 19 O -0.547 6.547 20 O -0.502 6.502 21 C 0.159 3.841 22 H 0.292 0.708 23 H 0.085 0.915 24 H 0.105 0.895 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.430 0.570 28 H 0.110 0.890 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -12.609 1.956 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.106 4.106 3 Si 0.637 3.363 4 H -0.162 1.162 5 H -0.138 1.138 6 H -0.156 1.156 7 C -1.167 5.167 8 H 0.130 0.870 9 S 2.815 3.185 10 O -1.016 7.016 11 O -1.015 7.015 12 N -0.862 5.862 13 C 0.012 3.988 14 C -0.156 4.156 15 H 0.149 0.851 16 C -0.095 4.095 17 C -0.198 4.198 18 C 0.374 3.626 19 O -0.438 6.438 20 O -0.316 6.316 21 C 0.034 3.966 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.123 0.877 25 H 0.151 0.849 26 H 0.159 0.841 27 H 0.292 0.708 28 H 0.128 0.872 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.613 -11.633 1.623 15.179 hybrid contribution 0.050 0.971 0.406 1.054 sum 9.663 -10.662 2.029 14.532 Atomic orbital electron populations 1.69995 1.07262 1.30529 1.40144 1.25102 0.95616 1.01225 0.88687 0.87575 0.82844 0.83247 0.82683 1.16150 1.13792 1.15602 1.30971 1.17493 1.01869 1.66366 0.87046 1.00099 0.75846 0.70347 0.72223 1.93419 1.85275 1.76776 1.46162 1.93364 1.85227 1.76727 1.46218 1.59217 1.83998 1.28659 1.14339 1.21812 0.96627 0.92456 0.87878 1.24042 1.00554 1.01344 0.89641 0.85113 1.23437 1.07009 0.87324 0.91723 1.22261 0.93399 1.08529 0.95596 1.22010 0.88711 0.70701 0.81227 1.90699 1.33491 1.47245 1.72384 1.84486 1.44325 1.83222 1.19523 1.21460 0.95155 0.92164 0.87826 0.89706 0.89693 0.87730 0.84891 0.84083 0.70831 0.87171 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.80 13.96 21.45 0.30 -48.50 15 2 C 0.11 6.38 5.47 84.66 0.46 6.84 15 3 Si 0.82 41.26 26.54 68.60 1.82 43.08 15 4 H -0.24 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.22 -9.51 7.11 99.48 0.71 -8.80 15 6 H -0.23 -12.22 5.61 99.48 0.56 -11.66 15 7 C -1.03 -58.02 10.29 67.74 0.70 -57.32 15 8 H 0.11 6.30 8.06 -2.91 -0.02 6.27 15 9 S 2.71 137.63 4.52 -56.49 -0.26 137.37 15 10 O -1.03 -56.08 15.42 -128.00 -1.97 -58.05 15 11 O -1.02 -55.39 16.23 -128.00 -2.08 -57.47 15 12 N -1.02 -39.24 3.72 -502.85 -1.87 -41.11 15 13 C 0.14 3.99 7.02 86.53 0.61 4.60 15 14 C -0.14 -3.18 6.75 -9.89 -0.07 -3.25 15 15 H 0.13 3.05 8.14 -2.38 -0.02 3.04 15 16 C -0.06 -0.89 9.92 30.60 0.30 -0.59 15 17 C -0.19 -4.89 2.88 -52.02 -0.15 -5.04 15 18 C 0.53 14.34 7.88 71.23 0.56 14.90 15 19 O -0.55 -17.62 17.57 21.94 0.39 -17.23 15 20 O -0.50 -10.73 13.35 -51.41 -0.69 -11.42 15 21 C 0.16 4.90 6.81 86.53 0.59 5.49 15 22 H 0.29 15.10 8.31 -92.71 -0.77 14.33 15 23 H 0.08 2.63 7.73 -2.39 -0.02 2.61 15 24 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.13 1.50 8.14 -2.39 -0.02 1.49 15 26 H 0.14 1.47 8.14 -2.39 -0.02 1.45 15 27 H 0.43 5.10 9.10 -74.06 -0.67 4.43 15 28 H 0.11 2.73 8.14 -2.39 -0.02 2.72 15 29 H 0.08 2.64 7.56 -2.39 -0.02 2.62 15 Total: -1.00 -76.75 269.61 -0.98 -77.73 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.37 Total: 9.98 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 3.00 Total: -34.38 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -1.57 Total: -89.62 kcal Atomic # 8 Polarization: -139.82 SS G_CDS: -4.35 Total: -144.17 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.82 Total: 43.08 kcal Atomic # 16 Polarization: 137.63 SS G_CDS: -0.26 Total: 137.37 kcal Total: -76.75 -0.98 -77.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703462866.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.692 kcal (2) G-P(sol) polarization free energy of solvation -76.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds