Wall clock time and date at job start Mon Mar 30 2020 04:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99708 * 2 1 4 4 H 1.48500 * 109.46819 * 239.99691 * 3 2 1 5 5 H 1.48499 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47144 * 120.00045 * 3 2 1 7 7 C 1.38797 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00712 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99665 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99910 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47038 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00171 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49098 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11565 * 155.35611 * 14 13 11 16 16 O 1.42899 * 113.73966 * 269.25861 * 15 14 13 17 17 C 1.50697 * 113.73728 * 137.95278 * 15 14 13 18 18 O 1.20821 * 120.00327 * 334.99849 * 17 15 14 19 19 O 1.34230 * 119.99611 * 155.00089 * 17 15 14 20 20 C 1.47576 * 134.49404 * 359.97438 * 13 11 10 21 21 H 0.96996 * 120.00189 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47464 * 59.99980 * 10 9 7 23 23 H 1.09001 * 109.47285 * 299.99491 * 10 9 7 24 24 H 1.09001 * 113.76908 * 41.05531 * 14 13 11 25 25 H 1.08997 * 113.76763 * 269.65793 * 14 13 11 26 26 H 0.96703 * 113.99221 * 180.02562 * 16 15 14 27 27 H 0.96707 * 117.00029 * 179.97438 * 19 17 15 28 28 H 1.09003 * 113.77250 * 90.33955 * 20 13 11 29 29 H 1.09001 * 113.87174 * 318.95113 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 2.6893 -7.8107 0.0004 15 6 4.0888 -7.8538 -0.6395 16 8 4.0691 -7.8296 -2.0682 17 6 4.9784 -8.9342 -0.0807 18 8 4.7884 -9.3559 1.0355 19 8 5.9818 -9.4280 -0.8230 20 6 4.3146 -6.4721 0.0009 21 1 -0.4850 0.8400 -0.0004 22 1 3.1247 -3.7313 0.8905 23 1 3.1246 -3.7313 -0.8895 24 1 1.8953 -8.1686 -0.6550 25 1 2.6487 -8.2481 0.9979 26 1 4.9464 -7.8569 -2.4740 27 1 6.5257 -10.1196 -0.4216 28 1 4.7514 -6.5164 0.9985 29 1 4.8200 -5.7620 -0.6536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706478402.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:59 Heat of formation + Delta-G solvation = -160.214392 kcal Electronic energy + Delta-G solvation = -17011.540542 eV Core-core repulsion = 13833.601642 eV Total energy + Delta-G solvation = -3177.938899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.35538 -40.66155 -39.09447 -37.40479 -36.29261 -34.58936 -32.02746 -29.58804 -27.74737 -27.45025 -25.65811 -21.90287 -20.68640 -19.87648 -19.41103 -18.81297 -18.25844 -17.43626 -16.89002 -16.85968 -16.53922 -16.03592 -15.67193 -15.18872 -15.12719 -14.49127 -14.44166 -14.20757 -13.60059 -13.49495 -13.18585 -12.88060 -12.85664 -12.65172 -12.62947 -11.90562 -11.76326 -11.50521 -11.12933 -10.95605 -10.30967 -9.97071 -8.69672 -8.34637 -6.14203 0.84224 1.10357 1.38845 1.42180 1.45131 1.53209 1.70964 1.98673 2.26926 2.64774 2.90742 2.99461 3.14330 3.47765 3.76318 4.08497 4.23575 4.24461 4.29561 4.41511 4.44526 4.63835 4.66953 5.41207 5.44432 6.19366 6.35099 6.49045 6.85804 6.97578 7.06084 8.74478 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.004076 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.614360 B = 6868.111648 C = 7204.398799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.152 6.152 10 C -0.119 4.119 11 C 0.560 3.440 12 O -0.563 6.563 13 N -0.644 5.644 14 C 0.124 3.876 15 C 0.119 3.881 16 O -0.525 6.525 17 C 0.487 3.513 18 O -0.526 6.526 19 O -0.499 6.499 20 C 0.094 3.906 21 H 0.272 0.728 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.412 0.588 27 H 0.437 0.563 28 H 0.122 0.878 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.838 -17.376 -2.016 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.269 4.269 11 C 0.350 3.650 12 O -0.441 6.441 13 N -0.380 5.380 14 C 0.002 3.998 15 C 0.075 3.925 16 O -0.335 6.335 17 C 0.328 3.672 18 O -0.415 6.415 19 O -0.314 6.314 20 C -0.028 4.028 21 H 0.080 0.920 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.110 0.890 25 H 0.140 0.860 26 H 0.265 0.735 27 H 0.300 0.700 28 H 0.140 0.860 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.875 -17.208 -1.815 22.819 hybrid contribution 2.176 0.617 0.244 2.274 sum 17.051 -16.592 -1.571 23.843 Atomic orbital electron populations 1.70182 1.08042 1.28747 1.47851 1.26172 0.95994 1.03431 0.93665 0.84968 0.77764 0.75471 0.79562 1.18510 1.20461 1.18585 1.23157 0.95388 0.91700 1.59113 0.89677 1.85647 1.10396 0.99353 1.97069 1.23274 1.03630 0.93254 1.06787 1.19771 0.85078 0.85585 0.74555 1.90704 1.16972 1.85539 1.50865 1.49615 1.08618 1.05771 1.74046 1.23388 0.94721 0.79737 1.01949 1.22322 0.94418 0.91709 0.84085 1.86628 1.36832 1.96005 1.14073 1.23379 0.79389 0.81282 0.83145 1.90787 1.70620 1.58684 1.21388 1.84415 1.41999 1.55660 1.49311 1.24130 0.80800 0.94316 1.03549 0.91952 0.87137 0.87109 0.89005 0.85980 0.73452 0.69976 0.85998 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.98 15 2 C 0.01 0.69 5.49 84.86 0.47 1.16 15 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 15 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 7 C -0.55 -31.14 9.50 67.95 0.65 -30.50 15 8 H 0.09 4.46 7.80 -2.91 -0.02 4.43 15 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 15 10 C -0.12 -4.82 5.91 71.24 0.42 -4.40 15 11 C 0.56 22.20 8.07 87.66 0.71 22.91 15 12 O -0.56 -27.83 16.59 -3.04 -0.05 -27.88 15 13 N -0.64 -18.15 3.61 -840.27 -3.03 -21.18 15 14 C 0.12 2.87 8.14 86.48 0.70 3.57 15 15 C 0.12 1.92 1.87 -10.88 -0.02 1.90 15 16 O -0.53 -8.34 13.45 -136.98 -1.84 -10.19 15 17 C 0.49 6.46 7.65 71.24 0.54 7.00 15 18 O -0.53 -10.18 16.83 21.98 0.37 -9.81 15 19 O -0.50 -3.07 12.75 -46.77 -0.60 -3.66 15 20 C 0.09 1.58 8.00 86.48 0.69 2.27 15 21 H 0.27 15.56 8.31 -92.71 -0.77 14.79 15 22 H 0.11 4.02 8.14 -2.40 -0.02 4.00 15 23 H 0.11 4.03 8.14 -2.39 -0.02 4.02 15 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.12 2.60 7.39 -2.39 -0.02 2.58 15 26 H 0.41 2.71 8.53 -74.05 -0.63 2.08 15 27 H 0.44 -0.82 9.10 -74.05 -0.67 -1.50 15 28 H 0.12 1.61 8.09 -2.39 -0.02 1.59 15 29 H 0.12 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -84.39 284.32 0.07 -84.32 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -0.09 Total: 4.84 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.16 Total: 3.92 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.74 Total: -77.15 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.12 Total: -51.54 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -84.39 0.07 -84.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706478402.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.893 kcal (2) G-P(sol) polarization free energy of solvation -84.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds