Wall clock time and date at job start Mon Mar 30 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 N 1.33314 * 126.55164 * 285.02751 * 4 2 1 6 6 N 1.29000 * 107.35431 * 180.02562 * 5 4 2 7 7 N 1.28783 * 108.72486 * 359.97438 * 6 5 4 8 8 H 0.97002 * 125.44552 * 179.97438 * 7 6 5 9 9 N 1.28877 * 109.10195 * 359.73508 * 7 6 5 10 10 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 11 11 C 1.46499 * 120.00225 * 59.99572 * 10 2 1 12 12 S 1.65600 * 119.99691 * 239.99718 * 10 2 1 13 13 O 1.42102 * 106.40015 * 23.54405 * 12 10 2 14 14 O 1.42097 * 106.40174 * 156.45969 * 12 10 2 15 15 C 1.76194 * 107.22024 * 270.00162 * 12 10 2 16 16 H 1.07997 * 120.00008 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00426 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99645 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00254 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46871 * 90.00376 * 19 17 15 21 21 H 1.48499 * 109.47386 * 209.99603 * 19 17 15 22 22 H 1.48497 * 109.47533 * 330.00473 * 19 17 15 23 23 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 25 25 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 26 26 H 1.09002 * 109.47391 * 270.00005 * 11 10 2 27 27 H 1.09001 * 109.46813 * 150.00061 * 11 10 2 28 28 H 1.09004 * 109.47041 * 30.00189 * 11 10 2 29 29 H 0.97002 * 120.00178 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.0351 -2.0267 -1.4417 6 7 2.5454 -2.2279 -2.6093 7 7 2.8565 -1.0902 -3.1262 8 1 3.2580 -0.9600 -3.9995 9 7 2.5443 -0.1519 -2.2996 10 7 2.0183 -0.6907 1.1961 11 6 1.6643 -2.0932 1.4280 12 16 2.9704 0.1141 2.2862 13 8 2.6903 1.4972 2.1193 14 8 2.8227 -0.5647 3.5258 15 6 4.6444 -0.1183 1.7880 16 1 4.8699 -0.7039 0.9091 17 6 5.6666 0.4466 2.5209 18 7 5.3921 1.1585 3.5921 19 14 7.4413 0.1997 1.9931 20 1 7.8381 1.2894 1.0655 21 1 8.3213 0.2230 3.1891 22 1 7.5757 -1.1094 1.3051 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7375 -2.1444 1.9993 27 1 2.4628 -2.5819 1.9863 28 1 1.5294 -2.5969 0.4707 29 1 6.1111 1.5563 4.1075 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707466189.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:48 Heat of formation + Delta-G solvation = 9.486370 kcal Electronic energy + Delta-G solvation = -18411.785595 eV Core-core repulsion = 15305.790975 eV Total energy + Delta-G solvation = -3105.994620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.45948 -38.36644 -37.46974 -36.16832 -35.23284 -35.05989 -33.96527 -31.37381 -28.30027 -27.31423 -25.68166 -25.28466 -22.33726 -20.89674 -20.11729 -18.99040 -18.34278 -18.08457 -17.13349 -17.04035 -16.27005 -15.80151 -15.38062 -14.77991 -14.68104 -14.03489 -13.66680 -13.53804 -13.41751 -13.15578 -13.06605 -13.00871 -12.56013 -12.51534 -12.37134 -12.36049 -12.25798 -12.14573 -11.77537 -11.31275 -11.28911 -11.03285 -10.00534 -8.78421 -7.51987 0.12302 0.24049 1.03817 1.28081 1.28632 1.44208 1.52333 2.15764 2.53384 2.70865 2.79430 3.33451 3.73182 4.01597 4.09237 4.17039 4.37791 4.49355 4.54533 4.78174 4.86470 4.91732 5.11089 5.21440 5.26218 5.32806 5.69788 5.83601 5.84804 6.74304 7.22309 8.17380 Molecular weight = 261.07amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.009296 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.171599 B = 3011.410432 C = 3784.487336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.236 3.764 3 H 0.113 0.887 4 C 0.165 3.835 5 N -0.282 5.282 6 N -0.060 5.060 7 N -0.204 5.204 8 H 0.493 0.507 9 N -0.299 5.299 10 N -0.998 5.998 11 C 0.083 3.917 12 S 2.720 3.280 13 O -1.030 7.030 14 O -1.031 7.031 15 C -1.042 5.042 16 H 0.104 0.896 17 C 0.075 3.925 18 N -0.889 5.889 19 Si 0.984 3.016 20 H -0.252 1.252 21 H -0.257 1.257 22 H -0.256 1.256 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 -4.268 -13.627 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.126 3.874 3 H 0.130 0.870 4 C -0.120 4.120 5 N -0.155 5.155 6 N -0.055 5.055 7 N -0.055 5.055 8 H 0.351 0.649 9 N -0.152 5.152 10 N -0.835 5.835 11 C -0.062 4.062 12 S 2.822 3.178 13 O -1.020 7.020 14 O -1.022 7.022 15 C -1.175 5.175 16 H 0.123 0.877 17 C -0.139 4.139 18 N -0.520 5.520 19 Si 0.802 3.198 20 H -0.176 1.176 21 H -0.180 1.180 22 H -0.180 1.180 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.124 0.876 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.292 -4.217 -13.049 14.699 hybrid contribution 1.582 0.236 -0.554 1.692 sum -3.710 -3.981 -13.603 14.651 Atomic orbital electron populations 1.22113 0.89900 1.04386 1.04251 1.19166 0.97108 0.94444 0.76681 0.86957 1.26107 1.00196 0.89032 0.96702 1.75682 1.17426 1.15442 1.06925 1.78849 1.12023 1.10467 1.04116 1.47784 1.38997 1.00575 1.18139 0.64871 1.74698 1.18060 1.19940 1.02511 1.57566 1.67258 1.22946 1.35689 1.21749 1.00850 0.79734 1.03831 1.00087 0.74643 0.71471 0.71619 1.93303 1.87012 1.35094 1.86581 1.93310 1.88444 1.76073 1.44341 1.30922 1.16797 1.46172 1.23600 0.87734 1.25914 1.06801 0.89377 0.91796 1.69962 1.38277 1.28428 1.15325 0.85228 0.74830 0.80222 0.79536 1.17645 1.18042 1.17963 0.90229 0.90452 0.89117 0.91409 0.92591 0.87560 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.18 71.98 0.66 -3.16 15 2 C 0.24 8.23 3.18 44.25 0.14 8.37 15 3 H 0.11 4.25 6.91 -2.39 -0.02 4.24 15 4 C 0.16 5.31 7.10 138.55 0.98 6.29 15 5 N -0.28 -8.77 9.89 -51.27 -0.51 -9.28 15 6 N -0.06 -1.56 13.48 37.02 0.50 -1.06 15 7 N -0.20 -4.33 7.91 37.00 0.29 -4.03 15 8 H 0.49 5.04 8.96 -347.67 -3.12 1.92 15 9 N -0.30 -8.50 12.36 -51.20 -0.63 -9.14 15 10 N -1.00 -41.01 3.06 -520.44 -1.59 -42.60 15 11 C 0.08 2.93 9.28 127.77 1.19 4.12 15 12 S 2.72 147.81 4.92 -56.49 -0.28 147.53 15 13 O -1.03 -60.23 16.58 -128.00 -2.12 -62.35 15 14 O -1.03 -61.79 17.09 -128.00 -2.19 -63.98 15 15 C -1.04 -58.91 9.75 67.73 0.66 -58.25 15 16 H 0.10 5.56 7.81 -2.91 -0.02 5.54 15 17 C 0.07 4.21 5.46 84.65 0.46 4.67 15 18 N -0.89 -53.13 13.19 21.45 0.28 -52.85 15 19 Si 0.98 42.07 29.54 68.60 2.03 44.09 15 20 H -0.25 -10.12 7.11 99.48 0.71 -9.42 15 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 23 H 0.08 1.86 7.67 -2.39 -0.02 1.84 15 24 H 0.08 2.01 8.14 -2.38 -0.02 1.99 15 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.06 2.12 7.79 -2.39 -0.02 2.10 15 28 H 0.11 3.31 5.37 -2.38 -0.01 3.30 15 29 H 0.30 16.06 8.31 -92.71 -0.77 15.28 15 Total: -1.00 -78.14 270.56 -2.04 -80.18 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -1.91 Total: 11.45 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 4.09 Total: -37.96 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -1.66 Total: -118.96 kcal Atomic # 8 Polarization: -122.02 SS G_CDS: -4.31 Total: -126.33 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 147.81 SS G_CDS: -0.28 Total: 147.53 kcal Total: -78.14 -2.04 -80.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707466189.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.663 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds