Wall clock time and date at job start Mon Mar 30 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 117.00279 * 2 1 4 4 C 1.46360 * 126.67204 * 270.31094 * 3 2 1 5 5 C 1.39884 * 133.49942 * 359.27898 * 4 3 2 6 6 C 1.36525 * 119.79978 * 180.40295 * 5 4 3 7 7 C 1.38905 * 120.52663 * 0.28139 * 6 5 4 8 8 C 1.37678 * 120.69627 * 359.97438 * 7 6 5 9 9 C 1.39318 * 119.84619 * 0.02562 * 8 7 6 10 10 N 1.37528 * 132.82196 * 180.02562 * 9 8 7 11 11 H 0.96998 * 125.07653 * 359.97438 * 10 9 8 12 12 C 1.37886 * 126.66927 * 90.02186 * 3 2 1 13 13 C 1.41758 * 125.53067 * 359.97438 * 12 3 2 14 14 O 1.21722 * 119.99835 * 0.02562 * 13 12 3 15 15 O 1.34935 * 120.00727 * 179.97438 * 13 12 3 16 16 C 1.34851 * 117.00472 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99848 * 0.02562 * 16 15 13 18 18 C 1.38777 * 119.99701 * 180.02562 * 16 15 13 19 19 N 1.31437 * 120.00540 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99600 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47033 * 60.00019 * 20 18 16 22 22 H 1.48500 * 109.46793 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46906 * 299.99883 * 20 18 16 24 24 H 1.09000 * 109.46455 * 59.99794 * 1 2 3 25 25 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46767 * 299.99812 * 1 2 3 27 27 H 1.08002 * 120.10226 * 0.68517 * 5 4 3 28 28 H 1.08000 * 119.73632 * 180.25468 * 6 5 4 29 29 H 1.07997 * 119.65403 * 179.97438 * 7 6 5 30 30 H 1.07993 * 120.07525 * 179.97438 * 8 7 6 31 31 H 0.97006 * 120.00421 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 2.4360 1.9900 -1.1739 5 6 2.3323 1.7749 -2.5522 6 6 2.8093 2.7121 -3.4229 7 6 3.4027 3.8761 -2.9513 8 6 3.5205 4.1069 -1.5991 9 6 3.0413 3.1655 -0.6907 10 7 3.0179 3.1202 0.6836 11 1 3.3685 3.8086 1.2701 12 6 2.4190 1.9418 1.1060 13 6 2.2222 1.5557 2.4557 14 8 1.6821 0.4956 2.7129 15 8 2.6346 2.3627 3.4554 16 6 2.4176 1.9358 4.7160 17 1 1.9335 0.9859 4.8886 18 6 2.8162 2.7171 5.7915 19 7 3.4057 3.8729 5.5814 20 14 2.5162 2.1253 7.5377 21 1 3.2201 0.8353 7.7510 22 1 3.0303 3.1350 8.4976 23 1 1.0591 1.9356 7.7526 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8722 0.8724 -2.9265 28 1 2.7250 2.5468 -4.4869 29 1 3.7756 4.6078 -3.6527 30 1 3.9839 5.0152 -1.2435 31 1 3.6847 4.4188 6.3332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803815470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:55 Heat of formation + Delta-G solvation = -55.017540 kcal Electronic energy + Delta-G solvation = -18907.068628 eV Core-core repulsion = 15734.080550 eV Total energy + Delta-G solvation = -3172.988078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11770 -38.93244 -37.64976 -36.47001 -35.18664 -32.30771 -31.37668 -29.52705 -28.65003 -26.57209 -25.70288 -23.71173 -21.87605 -21.07176 -19.70902 -18.01905 -17.84514 -17.01160 -16.27642 -15.60320 -15.27904 -15.12072 -14.53594 -14.43269 -14.24439 -14.08131 -13.76753 -13.65174 -12.94988 -12.54248 -11.80088 -11.70680 -11.60169 -11.46551 -11.21266 -10.92311 -10.54960 -10.53325 -10.02529 -9.60647 -9.42564 -9.24251 -8.72115 -8.10183 -7.44381 -6.58834 -4.19795 0.92463 1.71156 2.16028 3.10970 3.11722 3.15392 3.21963 3.83197 3.85301 3.95889 4.25265 4.49134 4.85610 5.02380 5.09321 5.24950 5.41300 5.55364 5.62492 5.62822 5.76201 5.77820 6.00349 6.10203 6.35236 6.51794 6.60624 6.66304 6.88444 7.18482 7.25093 7.68540 7.78760 7.96153 8.54801 8.90095 9.64422 10.58524 Molecular weight = 261.08amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.005521 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.147588 B = 5070.690943 C = 5956.288969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.293 6.293 3 C 0.068 3.932 4 C -0.129 4.129 5 C -0.057 4.057 6 C -0.156 4.156 7 C -0.094 4.094 8 C -0.132 4.132 9 C 0.122 3.878 10 N -0.563 5.563 11 H 0.431 0.569 12 C 0.067 3.933 13 C 0.445 3.555 14 O -0.526 6.526 15 O -0.212 6.212 16 C -0.370 4.370 17 H 0.100 0.900 18 C 0.042 3.958 19 N -0.859 5.859 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.268 1.268 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 0.920 -13.637 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.016 3.984 4 C -0.134 4.134 5 C -0.075 4.075 6 C -0.176 4.176 7 C -0.114 4.114 8 C -0.153 4.153 9 C 0.011 3.989 10 N -0.170 5.170 11 H 0.271 0.729 12 C -0.042 4.042 13 C 0.294 3.706 14 O -0.423 6.423 15 O -0.119 6.119 16 C -0.446 4.446 17 H 0.118 0.882 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.193 1.193 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.565 0.703 -13.252 13.362 hybrid contribution -0.054 0.319 1.183 1.227 sum -1.619 1.023 -12.069 12.220 Atomic orbital electron populations 1.22962 0.79642 1.02723 1.00265 1.85960 1.19424 1.21982 1.93297 1.18713 1.03040 0.88143 0.88554 1.19292 1.05911 0.94888 0.93343 1.20277 0.98014 0.98810 0.90441 1.20567 1.02649 0.95080 0.99269 1.20794 0.99044 0.97443 0.94098 1.20113 1.04435 0.98693 0.92029 1.18200 1.01048 0.96456 0.83168 1.42019 1.51729 1.18306 1.04947 0.72866 1.19096 1.04479 0.88302 0.92280 1.18316 0.82742 0.84787 0.84791 1.90765 1.43913 1.23821 1.83763 1.83932 1.67262 1.45155 1.15561 1.21287 1.39493 1.06082 0.77781 0.88212 1.25411 0.95752 0.95167 1.00021 1.69957 1.36164 1.10600 1.32838 0.85661 0.79292 0.78582 0.79237 1.19235 1.20245 1.19282 0.94317 0.89166 0.93202 0.85999 0.86109 0.85793 0.85807 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.13 101.05 1.12 1.74 16 2 O -0.29 -5.82 9.69 -32.19 -0.31 -6.13 16 3 C 0.07 1.38 6.50 -36.45 -0.24 1.14 16 4 C -0.13 -2.23 6.34 -105.06 -0.67 -2.89 16 5 C -0.06 -0.79 10.06 -39.58 -0.40 -1.19 16 6 C -0.16 -1.82 9.97 -39.95 -0.40 -2.22 16 7 C -0.09 -1.07 10.01 -39.54 -0.40 -1.47 16 8 C -0.13 -1.74 10.08 -39.38 -0.40 -2.14 16 9 C 0.12 2.01 7.24 -83.95 -0.61 1.41 16 10 N -0.56 -10.44 6.10 -8.16 -0.05 -10.49 16 11 H 0.43 7.52 8.96 -40.82 -0.37 7.15 16 12 C 0.07 1.47 6.85 -83.51 -0.57 0.90 16 13 C 0.45 11.55 7.68 32.08 0.25 11.80 16 14 O -0.53 -14.55 15.34 -24.59 -0.38 -14.93 16 15 O -0.21 -5.97 9.70 -22.19 -0.22 -6.19 16 16 C -0.37 -10.73 9.65 30.93 0.30 -10.43 16 17 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 18 C 0.04 1.13 5.50 -17.52 -0.10 1.04 16 19 N -0.86 -24.20 13.67 55.48 0.76 -23.44 16 20 Si 0.95 20.73 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 287.17 15.07 4.33 4.33 Total: -1.00 -32.75 287.17 -5.81 -38.56 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.82 Total: 4.90 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.10 Total: -2.31 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.71 Total: -33.93 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.90 Total: -27.25 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.75 -5.81 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803815470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.455 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds