Wall clock time and date at job start Mon Mar 30 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 117.00279 * 2 1 4 4 C 1.46360 * 126.67204 * 270.31094 * 3 2 1 5 5 C 1.39884 * 133.49942 * 359.27898 * 4 3 2 6 6 C 1.36525 * 119.79978 * 180.40295 * 5 4 3 7 7 C 1.38905 * 120.52663 * 0.28139 * 6 5 4 8 8 C 1.37678 * 120.69627 * 359.97438 * 7 6 5 9 9 C 1.39318 * 119.84619 * 0.02562 * 8 7 6 10 10 N 1.37528 * 132.82196 * 180.02562 * 9 8 7 11 11 H 0.96998 * 125.07653 * 359.97438 * 10 9 8 12 12 C 1.37886 * 126.66927 * 90.02186 * 3 2 1 13 13 C 1.41758 * 125.53067 * 359.97438 * 12 3 2 14 14 O 1.21722 * 119.99835 * 0.02562 * 13 12 3 15 15 O 1.34935 * 120.00727 * 179.97438 * 13 12 3 16 16 C 1.34851 * 117.00472 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99848 * 0.02562 * 16 15 13 18 18 C 1.38777 * 119.99701 * 180.02562 * 16 15 13 19 19 N 1.31437 * 120.00540 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99600 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47033 * 60.00019 * 20 18 16 22 22 H 1.48500 * 109.46793 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46906 * 299.99883 * 20 18 16 24 24 H 1.09000 * 109.46455 * 59.99794 * 1 2 3 25 25 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46767 * 299.99812 * 1 2 3 27 27 H 1.08002 * 120.10226 * 0.68517 * 5 4 3 28 28 H 1.08000 * 119.73632 * 180.25468 * 6 5 4 29 29 H 1.07997 * 119.65403 * 179.97438 * 7 6 5 30 30 H 1.07993 * 120.07525 * 179.97438 * 8 7 6 31 31 H 0.97006 * 120.00421 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 2.4360 1.9900 -1.1739 5 6 2.3323 1.7749 -2.5522 6 6 2.8093 2.7121 -3.4229 7 6 3.4027 3.8761 -2.9513 8 6 3.5205 4.1069 -1.5991 9 6 3.0413 3.1655 -0.6907 10 7 3.0179 3.1202 0.6836 11 1 3.3685 3.8086 1.2701 12 6 2.4190 1.9418 1.1060 13 6 2.2222 1.5557 2.4557 14 8 1.6821 0.4956 2.7129 15 8 2.6346 2.3627 3.4554 16 6 2.4176 1.9358 4.7160 17 1 1.9335 0.9859 4.8886 18 6 2.8162 2.7171 5.7915 19 7 3.4057 3.8729 5.5814 20 14 2.5162 2.1253 7.5377 21 1 3.2201 0.8353 7.7510 22 1 3.0303 3.1350 8.4976 23 1 1.0591 1.9356 7.7526 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8722 0.8724 -2.9265 28 1 2.7250 2.5468 -4.4869 29 1 3.7756 4.6078 -3.6527 30 1 3.9839 5.0152 -1.2435 31 1 3.6847 4.4188 6.3332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803815470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:55 Heat of formation + Delta-G solvation = -76.533349 kcal Electronic energy + Delta-G solvation = -18908.001623 eV Core-core repulsion = 15734.080550 eV Total energy + Delta-G solvation = -3173.921074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.52715 -40.84702 -39.12027 -37.72673 -37.22853 -34.39863 -32.56985 -30.86072 -29.97885 -28.09195 -27.51081 -25.28988 -23.06036 -22.46603 -21.33973 -20.00520 -19.51368 -18.47112 -17.57490 -17.18776 -16.96858 -16.86140 -16.26554 -16.18859 -15.57181 -15.33993 -15.03979 -14.85446 -14.57895 -14.07510 -13.67722 -13.31234 -12.81690 -12.71510 -12.61696 -12.39840 -12.22253 -12.15666 -11.97530 -11.40968 -10.95786 -10.78153 -10.65573 -9.35915 -8.75383 -8.64468 -6.40132 -0.46429 0.61183 0.81106 1.31162 1.40113 1.47211 1.79863 2.03089 2.07331 2.65311 2.75819 2.91473 2.95670 3.65479 3.97257 4.17721 4.21397 4.39335 4.41826 4.46386 4.51854 4.59938 4.71241 4.85545 5.06715 5.10006 5.25800 5.49027 5.56247 5.64887 5.71134 6.07250 6.35782 6.46400 6.49093 6.80030 7.56881 8.55540 Molecular weight = 261.08amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.005521 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.147588 B = 5070.690943 C = 5956.288969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.317 6.317 3 C 0.086 3.914 4 C -0.156 4.156 5 C -0.063 4.063 6 C -0.143 4.143 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.117 3.883 10 N -0.564 5.564 11 H 0.430 0.570 12 C 0.007 3.993 13 C 0.452 3.548 14 O -0.556 6.556 15 O -0.235 6.235 16 C -0.418 4.418 17 H 0.085 0.915 18 C 0.000 4.000 19 N -0.896 5.896 20 Si 1.020 2.980 21 H -0.262 1.262 22 H -0.257 1.257 23 H -0.260 1.260 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.023 0.977 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 1.700 -16.489 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.032 3.968 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.089 4.089 8 C -0.165 4.165 9 C 0.007 3.993 10 N -0.171 5.171 11 H 0.270 0.730 12 C -0.101 4.101 13 C 0.302 3.698 14 O -0.454 6.454 15 O -0.143 6.143 16 C -0.494 4.494 17 H 0.103 0.897 18 C -0.201 4.201 19 N -0.532 5.532 20 Si 0.839 3.161 21 H -0.186 1.186 22 H -0.180 1.180 23 H -0.185 1.185 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.042 0.958 27 H 0.156 0.844 28 H 0.180 0.820 29 H 0.186 0.814 30 H 0.164 0.836 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.369 1.497 -16.137 16.264 hybrid contribution -0.123 0.079 1.635 1.641 sum -1.493 1.577 -14.502 14.664 Atomic orbital electron populations 1.23153 0.77418 1.04664 1.00341 1.85862 1.21496 1.22361 1.93505 1.19183 1.00840 0.87303 0.89452 1.19444 1.07718 0.94848 0.94089 1.20592 0.98291 1.00308 0.88995 1.21096 1.00162 0.93902 1.00965 1.21407 0.96094 0.97704 0.93738 1.20535 1.04635 0.98887 0.92419 1.18710 1.00976 0.97336 0.82289 1.41877 1.51910 1.17291 1.06024 0.72992 1.18727 1.09461 0.91263 0.90626 1.19006 0.80788 0.83975 0.85992 1.90700 1.45067 1.24929 1.84684 1.83951 1.68563 1.45977 1.15852 1.21480 1.42259 1.06742 0.78892 0.89732 1.26586 0.94491 0.94952 1.04105 1.70032 1.36844 1.11671 1.34671 0.84649 0.79592 0.78614 0.73292 1.18607 1.18041 1.18467 0.91437 0.86390 0.95815 0.84395 0.82018 0.81411 0.83600 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 11.13 113.37 1.26 2.48 16 2 O -0.32 -12.90 9.69 -76.23 -0.74 -13.64 16 3 C 0.09 3.58 6.50 24.30 0.16 3.73 16 4 C -0.16 -5.23 6.34 -20.15 -0.13 -5.36 16 5 C -0.06 -1.55 10.06 22.27 0.22 -1.33 16 6 C -0.14 -2.52 9.97 22.03 0.22 -2.30 16 7 C -0.07 -1.20 10.01 22.30 0.22 -0.98 16 8 C -0.14 -3.33 10.08 22.40 0.23 -3.10 16 9 C 0.12 3.77 7.24 39.13 0.28 4.06 16 10 N -0.56 -21.85 6.10 -179.72 -1.10 -22.94 16 11 H 0.43 16.04 8.96 -92.71 -0.83 15.21 16 12 C 0.01 0.34 6.85 38.83 0.27 0.60 16 13 C 0.45 25.28 7.68 68.69 0.53 25.80 16 14 O -0.56 -33.02 15.34 24.04 0.37 -32.66 16 15 O -0.24 -14.27 9.70 9.29 0.09 -14.18 16 16 C -0.42 -25.79 9.65 67.95 0.66 -25.14 16 17 H 0.08 5.29 6.86 -2.91 -0.02 5.27 16 18 C 0.00 -0.01 5.50 84.88 0.47 0.46 16 19 N -0.90 -52.12 13.67 21.63 0.30 -51.82 16 20 Si 1.02 43.26 29.55 68.60 2.03 45.29 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 25 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.28 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -77.13 287.17 5.68 -71.46 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.35 Total: 19.56 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.38 Total: -1.07 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -0.80 Total: -74.77 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -0.28 Total: -60.48 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -77.13 5.68 -71.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803815470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.078 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds