Wall clock time and date at job start Mon Mar 30 2020 05:30:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.47082 * 2 1
4 4 C 1.50697 * 109.47013 * 239.99990 * 2 1 3
5 5 H 1.07996 * 120.00277 * 239.99778 * 4 2 1
6 6 C 1.37881 * 120.00145 * 60.00129 * 4 2 1
7 7 N 1.31517 * 119.99858 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00342 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.47144 * 359.97438 * 8 6 4
10 10 H 1.48502 * 109.47192 * 119.99654 * 8 6 4
11 11 H 1.48496 * 109.47437 * 240.00197 * 8 6 4
12 12 C 1.50701 * 109.47098 * 120.00041 * 2 1 3
13 13 O 1.21284 * 119.99525 * 120.00029 * 12 2 1
14 14 N 1.34769 * 119.99768 * 299.99856 * 12 2 1
15 15 C 1.39441 * 119.99606 * 175.50784 * 14 12 2
16 16 C 1.36496 * 120.68541 * 34.70651 * 15 14 12
17 17 C 1.39713 * 121.76429 * 179.97438 * 16 15 14
18 18 C 1.35552 * 122.69970 * 0.02562 * 17 16 15
19 19 C 1.40695 * 120.09051 * 0.02562 * 18 17 16
20 20 N 1.31063 * 138.75415 * 180.02562 * 19 18 17
21 21 O 1.21501 * 109.06130 * 179.15570 * 20 19 18
22 22 N 1.21512 * 116.27633 * 0.79277 * 21 20 19
23 23 C 1.30663 * 109.09379 * 359.33626 * 22 21 20
24 24 H 1.08996 * 109.47176 * 300.00052 * 1 2 3
25 25 H 1.09002 * 109.47355 * 59.99746 * 1 2 3
26 26 H 1.08997 * 109.47235 * 179.97438 * 1 2 3
27 27 H 0.96995 * 120.00142 * 180.02562 * 7 6 4
28 28 H 0.96994 * 120.00625 * 355.51272 * 14 12 2
29 29 H 1.08000 * 119.12118 * 359.97438 * 16 15 14
30 30 H 1.07994 * 118.65083 * 180.02562 * 17 16 15
31 31 H 1.08011 * 119.95824 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5884 -1.1314
6 6 1.6992 -0.2393 -2.4828
7 7 0.9436 0.8303 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 3.1483 -2.2856 -3.6039
10 1 1.1677 -1.5866 -4.8165
11 1 3.1472 -0.1858 -4.8161
12 6 2.0323 -0.7104 1.2305
13 8 2.7296 -1.6965 1.1191
14 7 1.7068 -0.2499 2.4545
15 6 2.0924 -0.9592 3.5914
16 6 3.2798 -1.6316 3.6235
17 6 3.6886 -2.3488 4.7507
18 6 2.9423 -2.4267 5.8795
19 6 1.7000 -1.7700 5.9506
20 7 0.7223 -1.6008 6.8069
21 8 -0.1269 -0.8919 6.3045
22 7 0.0869 -0.5193 5.1678
23 6 1.2385 -0.9933 4.7722
24 1 -0.3633 0.5138 0.8899
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 0.7089 1.1615 -3.4843
28 1 1.2042 0.5747 2.5446
29 1 3.9204 -1.6087 2.7543
30 1 4.6383 -2.8622 4.7214
31 1 3.3017 -2.9937 6.7257
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000854325275.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:30:39
Heat of formation + Delta-G solvation = 83.236012 kcal
Electronic energy + Delta-G solvation = -18860.449612 eV
Core-core repulsion = 15725.749408 eV
Total energy + Delta-G solvation = -3134.700203 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 261.090 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-47.71232 -41.49363 -39.19567 -36.35456 -35.88669 -35.34336 -34.20536 -32.72651
-30.53117 -27.27442 -26.77556 -25.91875 -24.85980 -22.27687 -21.53847 -20.05497
-19.95053 -19.33011 -18.42827 -18.02761 -17.33228 -16.69375 -16.37980 -16.19408
-15.42427 -14.97241 -14.53268 -14.10047 -14.01189 -13.66678 -13.46824 -13.03720
-13.00114 -12.92694 -12.75814 -12.64875 -12.56199 -12.29271 -12.05038 -11.45300
-11.08806 -10.87018 -10.65254 -10.41749 -9.03160 -8.18058 -6.29096 -1.02224
0.08086 0.73930 1.40725 1.43539 1.54963 1.60688 1.83738 1.96183
2.35948 2.38027 2.45000 2.79662 3.12850 3.47000 3.78789 4.02116
4.05990 4.28771 4.45977 4.65352 4.72737 4.85016 4.90931 5.07158
5.19698 5.31315 5.40543 5.62036 5.69198 5.85303 6.09716 6.38230
6.79540 7.13495 7.35081 7.40373 8.88265
Molecular weight = 261.09amu
Principal moments of inertia in cm(-1)
A = 0.037367 B = 0.004859 C = 0.004403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.139300 B = 5761.501554 C = 6357.744995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.028 3.972
3 H 0.051 0.949
4 C -0.528 4.528
5 H 0.057 0.943
6 C 0.020 3.980
7 N -0.911 5.911
8 Si 0.958 3.042
9 H -0.275 1.275
10 H -0.278 1.278
11 H -0.275 1.275
12 C 0.528 3.472
13 O -0.544 6.544
14 N -0.665 5.665
15 C 0.184 3.816
16 C -0.120 4.120
17 C -0.038 4.038
18 C -0.101 4.101
19 C 0.041 3.959
20 N -0.359 5.359
21 O 0.371 5.629
22 N -0.348 5.348
23 C -0.014 4.014
24 H 0.046 0.954
25 H 0.075 0.925
26 H 0.023 0.977
27 H 0.265 0.735
28 H 0.421 0.579
29 H 0.147 0.853
30 H 0.185 0.815
31 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.185 -2.879 15.940 16.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.007 3.993
3 H 0.069 0.931
4 C -0.566 4.566
5 H 0.075 0.925
6 C -0.179 4.179
7 N -0.550 5.550
8 Si 0.783 3.217
9 H -0.200 1.200
10 H -0.203 1.203
11 H -0.201 1.201
12 C 0.319 3.681
13 O -0.419 6.419
14 N -0.310 5.310
15 C 0.084 3.916
16 C -0.146 4.146
17 C -0.060 4.060
18 C -0.122 4.122
19 C -0.112 4.112
20 N -0.085 5.085
21 O 0.136 5.864
22 N -0.067 5.067
23 C -0.169 4.169
24 H 0.065 0.935
25 H 0.094 0.906
26 H 0.042 0.958
27 H 0.075 0.925
28 H 0.259 0.741
29 H 0.165 0.835
30 H 0.202 0.798
31 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges 2.549 -3.124 16.181 16.676
hybrid contribution 0.372 0.036 -1.477 1.524
sum 2.921 -3.088 14.703 15.306
Atomic orbital electron populations
1.21602 0.95197 0.99531 1.01801 1.18849 0.95145 0.96456 0.88834
0.93106 1.21280 1.31845 1.12934 0.90570 0.92512 1.25606 0.95088
0.95669 1.01553 1.69951 1.37102 1.23574 1.24413 0.85503 0.78255
0.78644 0.79260 1.19995 1.20328 1.20062 1.21870 0.78038 0.83791
0.84391 1.90512 1.37460 1.27363 1.86595 1.43643 1.56930 1.26734
1.03686 1.17527 0.91705 0.98880 0.83446 1.21318 0.93727 0.98582
1.00949 1.21128 1.00949 0.94555 0.89357 1.20193 0.89141 1.01577
1.01298 1.23173 0.98691 1.00876 0.88455 1.75212 1.00264 1.11547
1.21441 1.85361 1.37880 1.43994 1.19175 1.75049 1.15827 1.19068
0.96787 1.23977 0.92533 1.01459 0.98974 0.93510 0.90622 0.95807
0.92540 0.74126 0.83542 0.79819 0.80278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.53 8.87 71.98 0.64 -4.89 16
2 C 0.03 1.35 2.64 -12.29 -0.03 1.32 16
3 H 0.05 2.49 8.14 -2.38 -0.02 2.47 16
4 C -0.53 -28.97 8.37 25.60 0.21 -28.76 16
5 H 0.06 3.29 6.75 -2.91 -0.02 3.27 16
6 C 0.02 1.09 5.30 84.66 0.45 1.54 16
7 N -0.91 -49.67 11.32 21.45 0.24 -49.43 16
8 Si 0.96 43.28 29.54 68.60 2.03 45.30 16
9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16
11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16
12 C 0.53 22.61 6.99 87.66 0.61 23.22 16
13 O -0.54 -25.71 12.90 -3.04 -0.04 -25.75 16
14 N -0.67 -22.85 5.22 -300.05 -1.57 -24.42 16
15 C 0.18 5.74 6.48 39.47 0.26 5.99 16
16 C -0.12 -3.33 8.64 22.22 0.19 -3.14 16
17 C -0.04 -0.70 9.84 22.00 0.22 -0.48 16
18 C -0.10 -1.85 10.03 22.25 0.22 -1.62 16
19 C 0.04 1.03 7.77 42.60 0.33 1.36 16
20 N -0.36 -9.18 12.29 -57.37 -0.71 -9.89 16
21 O 0.37 9.73 11.67 139.26 1.63 11.36 16
22 N -0.35 -10.14 12.27 -55.24 -0.68 -10.82 16
23 C -0.01 -0.41 7.92 44.00 0.35 -0.06 16
24 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16
25 H 0.08 3.75 6.07 -2.39 -0.01 3.73 16
26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16
27 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16
28 H 0.42 12.79 8.38 -92.71 -0.78 12.01 16
29 H 0.15 4.59 6.13 -2.91 -0.02 4.57 16
30 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16
31 H 0.18 1.96 8.06 -2.90 -0.02 1.93 16
Total: -1.00 -62.97 275.09 4.77 -58.20
By element:
Atomic # 1 Polarization: 10.54 SS G_CDS: 0.42 Total: 10.95 kcal
Atomic # 6 Polarization: -8.96 SS G_CDS: 3.45 Total: -5.51 kcal
Atomic # 7 Polarization: -91.85 SS G_CDS: -2.71 Total: -94.56 kcal
Atomic # 8 Polarization: -15.97 SS G_CDS: 1.59 Total: -14.39 kcal
Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal
Total: -62.97 4.77 -58.20 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000854325275.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.440 kcal
(2) G-P(sol) polarization free energy of solvation -62.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds