Wall clock time and date at job start Mon Mar 30 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21786 * 119.99781 * 179.97438 * 12 11 10 14 14 C 1.43200 * 120.00229 * 359.97438 * 12 11 10 15 15 C 7.08039 * 70.88635 * 208.63288 * 2 1 3 16 16 C 8.08909 * 65.67943 * 214.74395 * 2 1 3 17 17 C 1.37055 * 125.47332 * 289.39004 * 16 15 14 18 18 C 1.37435 * 113.21806 * 180.02562 * 17 16 15 19 19 C 1.33862 * 115.13119 * 359.97438 * 18 17 16 20 20 S 1.70612 * 111.01385 * 359.72948 * 19 18 17 21 21 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 22 22 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 24 24 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 25 25 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 26 26 H 1.07992 * 123.39235 * 359.97438 * 17 16 15 27 27 H 1.07998 * 122.43251 * 180.02562 * 18 17 16 28 28 H 1.08001 * 124.49515 * 180.02562 * 19 18 17 29 29 H 1.09003 * 113.77049 * 270.34039 * 21 11 10 30 30 H 1.08993 * 113.77081 * 138.93800 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3860 -6.5022 -0.8932 14 6 -0.1724 -5.7206 -2.3893 15 6 -1.0033 -5.8719 -3.2058 16 6 -2.0162 -6.0570 -4.2009 17 6 -3.3652 -5.9267 -3.9965 18 6 -4.1098 -6.1618 -5.1275 19 6 -3.4015 -6.4727 -6.2200 20 16 -1.7289 -6.4802 -5.8832 21 6 2.1608 -3.7402 -0.0462 22 1 -0.4849 0.8401 -0.0004 23 1 0.4833 -2.5466 0.7730 24 1 -0.3213 -2.8307 -1.5255 25 1 1.3285 -2.4988 -2.2141 26 1 -3.7994 -5.6665 -3.0426 27 1 -5.1879 -6.0993 -5.1346 28 1 -3.8314 -6.6855 -7.1876 29 1 3.1449 -3.5476 -0.4734 30 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855471705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:30 Heat of formation + Delta-G solvation = 82.879047 kcal Electronic energy + Delta-G solvation = -15565.907461 eV Core-core repulsion = 12841.651899 eV Total energy + Delta-G solvation = -2724.255562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40737 -38.05228 -37.02989 -33.71788 -32.70620 -29.92700 -28.79652 -25.70688 -25.19042 -24.71963 -22.21935 -20.13615 -19.33592 -18.37421 -17.13302 -16.60900 -16.03186 -15.69651 -14.87008 -14.49074 -14.18380 -13.64818 -13.49961 -13.01245 -12.77250 -12.65726 -12.25646 -11.66520 -11.43558 -11.25385 -11.19254 -11.01747 -10.82613 -10.46930 -10.35405 -9.96290 -9.38409 -9.12436 -8.79464 -8.64560 -8.56555 -7.99462 -6.21704 -4.27789 0.37249 1.00709 1.72460 2.10403 2.23601 2.99046 3.21241 3.30435 3.33724 3.46818 3.87846 4.25728 4.33535 4.80929 5.07860 5.10541 5.31553 5.39264 5.78459 5.97783 6.04575 6.09356 6.16660 6.20789 6.31103 6.51938 6.58496 6.74476 7.26705 7.50085 7.75818 8.10417 8.27416 8.55127 8.76072 9.39579 10.88074 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.004120 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.723272 B = 6794.273924 C = 7603.699331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.033 3.967 10 C 0.104 3.896 11 N -0.625 5.625 12 C 0.635 3.365 13 O -0.547 6.547 14 C -0.143 4.143 15 C -0.051 4.051 16 C -0.112 4.112 17 C -0.099 4.099 18 C -0.137 4.137 19 C -0.253 4.253 20 S 0.213 5.787 21 C 0.108 3.892 22 H 0.264 0.736 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.168 0.832 29 H 0.080 0.920 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -8.771 -11.109 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.014 3.986 10 C -0.018 4.018 11 N -0.357 5.357 12 C 0.424 3.576 13 O -0.428 6.428 14 C -0.151 4.151 15 C -0.055 4.055 16 C -0.229 4.229 17 C -0.130 4.130 18 C -0.168 4.168 19 C -0.390 4.390 20 S 0.483 5.517 21 C -0.013 4.013 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.185 0.815 29 H 0.098 0.902 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.294 -9.615 -11.847 16.151 hybrid contribution -1.153 1.189 0.581 1.755 sum -6.447 -8.427 -11.267 15.476 Atomic orbital electron populations 1.69961 1.06088 1.27107 1.49087 1.25029 0.94867 0.99446 0.94218 0.86469 0.80201 0.83254 0.77725 1.19523 1.20900 1.20848 1.20993 0.93141 0.89518 1.52182 0.91638 1.20530 0.94173 0.91441 0.92430 1.23918 0.99857 0.75632 1.02363 1.50518 1.39798 1.04375 1.41031 1.14396 0.80537 0.82865 0.79816 1.90850 1.55841 1.39695 1.56445 1.20848 0.96585 1.00701 0.96951 1.17803 0.93341 1.00541 0.93805 1.20437 0.93412 1.13344 0.95685 1.20864 0.90611 1.00997 1.00575 1.19934 1.01633 1.03609 0.91645 1.25258 0.98881 1.10716 1.04179 1.83230 1.03726 1.63756 1.00969 1.23613 0.93790 0.93434 0.90486 0.92631 0.91559 0.91485 0.90221 0.83159 0.83800 0.81467 0.90165 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.01 8.77 -34.44 -0.30 -13.31 16 8 H 0.07 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.03 0.77 3.60 -90.84 -0.33 0.45 16 10 C 0.10 2.23 8.14 -2.77 -0.02 2.21 16 11 N -0.63 -13.14 3.62 -180.96 -0.65 -13.79 16 12 C 0.63 13.52 7.89 -14.33 -0.11 13.41 16 13 O -0.55 -12.90 17.83 5.11 0.09 -12.81 16 14 C -0.14 -2.73 13.35 -38.83 -0.52 -3.24 16 15 C -0.05 -0.85 13.74 -38.83 -0.53 -1.39 16 16 C -0.11 -1.53 6.34 -38.09 -0.24 -1.77 16 17 C -0.10 -1.16 10.26 -40.30 -0.41 -1.58 16 18 C -0.14 -1.30 10.15 -41.41 -0.42 -1.72 16 19 C -0.25 -2.24 10.92 29.20 0.32 -1.92 16 20 S 0.21 2.26 23.07 -107.50 -2.48 -0.22 16 21 C 0.11 2.20 8.39 -2.96 -0.02 2.18 16 22 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 23 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 24 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 26 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 28 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -28.91 296.57 -8.48 -37.39 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -2.92 Total: -1.70 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.70 Total: -5.05 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.08 Total: -36.87 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.48 Total: -0.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.91 -8.48 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855471705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.269 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds