Wall clock time and date at job start Mon Mar 30 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21786 * 119.99781 * 179.97438 * 12 11 10 14 14 C 1.43200 * 120.00229 * 359.97438 * 12 11 10 15 15 C 7.08039 * 70.88635 * 208.63288 * 2 1 3 16 16 C 8.08909 * 65.67943 * 214.74395 * 2 1 3 17 17 C 1.37055 * 125.47332 * 289.39004 * 16 15 14 18 18 C 1.37435 * 113.21806 * 180.02562 * 17 16 15 19 19 C 1.33862 * 115.13119 * 359.97438 * 18 17 16 20 20 S 1.70612 * 111.01385 * 359.72948 * 19 18 17 21 21 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 22 22 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 24 24 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 25 25 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 26 26 H 1.07992 * 123.39235 * 359.97438 * 17 16 15 27 27 H 1.07998 * 122.43251 * 180.02562 * 18 17 16 28 28 H 1.08001 * 124.49515 * 180.02562 * 19 18 17 29 29 H 1.09003 * 113.77049 * 270.34039 * 21 11 10 30 30 H 1.08993 * 113.77081 * 138.93800 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3860 -6.5022 -0.8932 14 6 -0.1724 -5.7206 -2.3893 15 6 -1.0033 -5.8719 -3.2058 16 6 -2.0162 -6.0570 -4.2009 17 6 -3.3652 -5.9267 -3.9965 18 6 -4.1098 -6.1618 -5.1275 19 6 -3.4015 -6.4727 -6.2200 20 16 -1.7289 -6.4802 -5.8832 21 6 2.1608 -3.7402 -0.0462 22 1 -0.4849 0.8401 -0.0004 23 1 0.4833 -2.5466 0.7730 24 1 -0.3213 -2.8307 -1.5255 25 1 1.3285 -2.4988 -2.2141 26 1 -3.7994 -5.6665 -3.0426 27 1 -5.1879 -6.0993 -5.1346 28 1 -3.8314 -6.6855 -7.1876 29 1 3.1449 -3.5476 -0.4734 30 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855471705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:30 Heat of formation + Delta-G solvation = 67.106535 kcal Electronic energy + Delta-G solvation = -15566.591409 eV Core-core repulsion = 12841.651899 eV Total energy + Delta-G solvation = -2724.939510 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11648 -38.93628 -38.74818 -35.02477 -34.62172 -31.40316 -30.09471 -27.38450 -26.95773 -25.80797 -23.70358 -21.50946 -20.57314 -19.51310 -18.86477 -18.33109 -17.47805 -16.82996 -16.69150 -16.25277 -15.24287 -15.10092 -14.60628 -14.36196 -14.05694 -13.86423 -13.63829 -13.37886 -13.20259 -12.83082 -12.72152 -12.40000 -12.24736 -12.06714 -11.74301 -11.58534 -11.19940 -10.98843 -10.58982 -9.74567 -9.64845 -9.48779 -8.17107 -6.28773 -0.59001 -0.09932 0.76353 0.98817 1.21300 1.47115 1.50770 1.61164 1.69689 2.10794 2.36748 2.46318 2.86152 3.14295 3.89498 4.13844 4.23759 4.33199 4.39555 4.51797 4.54514 4.62562 4.76184 4.86656 4.97164 5.02276 5.20835 5.36867 5.57775 5.80444 5.92449 6.19073 6.57284 6.80245 6.87825 7.41782 8.93193 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.004120 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.723272 B = 6794.273924 C = 7603.699331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.071 0.929 9 C 0.024 3.976 10 C 0.118 3.882 11 N -0.626 5.626 12 C 0.640 3.360 13 O -0.578 6.578 14 C -0.213 4.213 15 C -0.003 4.003 16 C -0.179 4.179 17 C -0.082 4.082 18 C -0.150 4.150 19 C -0.225 4.225 20 S 0.230 5.770 21 C 0.115 3.885 22 H 0.265 0.735 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.175 0.825 28 H 0.205 0.795 29 H 0.096 0.904 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.602 -8.795 -13.250 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.089 0.911 9 C 0.005 3.995 10 C -0.004 4.004 11 N -0.358 5.358 12 C 0.430 3.570 13 O -0.462 6.462 14 C -0.220 4.220 15 C -0.007 4.007 16 C -0.295 4.295 17 C -0.115 4.115 18 C -0.180 4.180 19 C -0.362 4.362 20 S 0.501 5.499 21 C -0.006 4.006 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.172 0.828 27 H 0.192 0.808 28 H 0.222 0.778 29 H 0.114 0.886 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.249 -9.640 -13.986 18.099 hybrid contribution -1.036 1.122 1.095 1.879 sum -7.285 -8.519 -12.891 17.083 Atomic orbital electron populations 1.70070 1.07487 1.27855 1.50329 1.25768 0.95544 1.02608 0.93991 0.85475 0.79287 0.79270 0.77450 1.18659 1.20716 1.20941 1.21298 0.93539 0.90302 1.51594 0.91117 1.20429 0.94284 0.92202 0.92585 1.23689 0.99397 0.75842 1.01499 1.50474 1.39882 1.04316 1.41119 1.14517 0.80494 0.82241 0.79706 1.90804 1.57186 1.40352 1.57832 1.20443 0.98158 1.04880 0.98539 1.18381 0.92097 0.97625 0.92584 1.20697 0.93580 1.18250 0.97017 1.21192 0.90022 0.98526 1.01758 1.20211 1.03131 1.03874 0.90736 1.25794 0.97666 1.07271 1.05452 1.83212 1.05294 1.63055 0.98354 1.23572 0.93911 0.92062 0.91062 0.92624 0.94226 0.92246 0.89664 0.82774 0.80766 0.77829 0.88632 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.07 13.29 21.45 0.28 -49.79 16 2 C 0.02 1.08 5.46 84.65 0.46 1.55 16 3 Si 0.96 40.44 29.54 68.60 2.03 42.46 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -26.53 8.77 25.60 0.22 -26.31 16 8 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.02 1.15 3.60 -10.88 -0.04 1.11 16 10 C 0.12 5.16 8.14 86.42 0.70 5.87 16 11 N -0.63 -27.00 3.62 -844.63 -3.05 -30.06 16 12 C 0.64 28.24 7.89 85.49 0.67 28.91 16 13 O -0.58 -28.19 17.83 -4.62 -0.08 -28.27 16 14 C -0.21 -8.42 13.35 30.01 0.40 -8.02 16 15 C 0.00 -0.09 13.74 30.01 0.41 0.32 16 16 C -0.18 -4.72 6.34 23.24 0.15 -4.57 16 17 C -0.08 -1.76 10.26 21.80 0.22 -1.53 16 18 C -0.15 -2.26 10.15 21.08 0.21 -2.05 16 19 C -0.22 -3.01 10.92 66.82 0.73 -2.28 16 20 S 0.23 4.36 23.07 -56.49 -1.30 3.06 16 21 C 0.11 4.74 8.39 86.49 0.73 5.47 16 22 H 0.26 13.70 8.31 -92.71 -0.77 12.92 16 23 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 25 H 0.09 3.63 8.09 -2.39 -0.02 3.61 16 26 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 29 H 0.10 3.65 8.09 -2.39 -0.02 3.63 16 30 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -63.10 296.57 3.91 -59.19 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.16 Total: 4.94 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.88 Total: -1.54 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.77 Total: -79.84 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.08 Total: -28.27 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.30 Total: 3.06 kcal Total: -63.10 3.91 -59.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855471705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.295 kcal (2) G-P(sol) polarization free energy of solvation -63.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds