Wall clock time and date at job start Mon Mar 30 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55018 * 2 1 4 4 C 1.52998 * 117.50034 * 214.32434 * 2 1 3 5 5 C 1.53001 * 60.00347 * 252.51286 * 4 2 1 6 6 H 1.08996 * 117.50157 * 107.48798 * 5 4 2 7 7 N 1.46502 * 117.49643 * 252.51423 * 5 4 2 8 8 N 1.40123 * 126.49493 * 8.30345 * 7 5 4 9 9 N 1.28668 * 108.93264 * 179.81218 * 8 7 5 10 10 C 1.34840 * 109.63729 * 0.45848 * 9 8 7 11 11 C 1.41491 * 126.02318 * 179.70440 * 10 9 8 12 12 H 1.07999 * 120.00187 * 180.02562 * 11 10 9 13 13 C 1.39739 * 120.00053 * 0.02562 * 11 10 9 14 14 N 1.30991 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00156 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46794 * 60.00075 * 15 13 11 17 17 H 1.48500 * 109.47044 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47262 * 299.99925 * 15 13 11 19 19 C 1.35023 * 126.48811 * 188.62329 * 7 5 4 20 20 C 1.50697 * 126.77221 * 359.97438 * 19 7 5 21 21 F 1.39901 * 109.46942 * 90.00349 * 20 19 7 22 22 F 1.39901 * 109.46924 * 210.00082 * 20 19 7 23 23 F 1.39895 * 109.47477 * 330.00252 * 20 19 7 24 24 H 1.09002 * 109.47153 * 154.28028 * 1 2 3 25 25 H 1.09001 * 109.46832 * 34.28219 * 1 2 3 26 26 H 1.09004 * 109.47261 * 274.28200 * 1 2 3 27 27 H 1.08998 * 117.50041 * 0.02562 * 4 2 1 28 28 H 1.09003 * 117.49853 * 144.99608 * 4 2 1 29 29 H 0.97001 * 120.00228 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7652 5 6 2.2364 -1.1212 0.7648 6 1 1.6112 -1.8588 1.2678 7 7 3.4932 -0.7909 1.4413 8 7 4.6645 -0.3145 0.8375 9 7 5.5583 -0.1337 1.7452 10 6 5.0567 -0.4747 2.9494 11 6 5.7449 -0.4167 4.1843 12 1 5.2467 -0.7153 5.0948 13 6 7.0693 0.0271 4.2259 14 7 7.6738 0.3889 3.1215 15 14 7.9778 0.1045 5.8563 16 1 8.0352 -1.2530 6.4557 17 1 9.3578 0.6043 5.6307 18 1 7.2626 1.0229 6.7783 19 6 3.7442 -0.8937 2.7640 20 6 2.7896 -1.3682 3.8291 21 9 2.9137 -2.7532 3.9831 22 9 3.0903 -0.7356 5.0402 23 9 1.4787 -1.0564 3.4531 24 1 -0.3633 -0.9259 -0.4460 25 1 -0.3633 0.8492 -0.5789 26 1 -0.3634 0.0767 1.0248 27 1 1.6113 -1.8579 -1.2691 28 1 3.1713 -0.8747 -1.2688 29 1 8.5930 0.6973 3.1504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:50 Heat of formation + Delta-G solvation = -58.314941 kcal Electronic energy + Delta-G solvation = -20159.316878 eV Core-core repulsion = 16476.621825 eV Total energy + Delta-G solvation = -3682.695053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.06387 -48.60693 -48.53259 -42.15348 -38.77331 -35.57741 -33.60619 -32.02290 -29.35932 -28.05439 -26.26995 -24.70092 -22.28245 -22.07763 -21.55961 -19.47388 -19.41014 -19.18969 -18.54103 -16.97977 -16.87409 -16.09863 -15.62998 -15.40847 -15.25516 -15.05569 -14.95876 -14.73543 -14.70470 -14.38137 -13.96876 -13.87258 -13.24263 -13.07923 -12.97783 -12.72478 -12.44337 -12.27290 -12.08975 -11.83993 -11.37101 -11.19831 -11.12911 -10.38701 -9.76318 -8.55984 -6.53019 0.39605 1.35466 1.41789 1.43094 1.56279 1.90002 2.05716 2.24553 2.66754 2.92277 3.20793 3.23287 3.44834 3.57926 3.74855 3.77336 4.31782 4.47152 4.50878 4.74927 4.85428 4.91398 4.96206 5.12808 5.17369 5.27427 5.36483 6.03936 6.18377 6.47829 6.79177 7.84782 8.41103 Molecular weight = 261.08amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.007767 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.601308 B = 3604.230014 C = 4356.984153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.138 4.138 3 H 0.086 0.914 4 C -0.143 4.143 5 C 0.044 3.956 6 H 0.150 0.850 7 N -0.314 5.314 8 N -0.093 5.093 9 N -0.275 5.275 10 C 0.169 3.831 11 C -0.466 4.466 12 H 0.101 0.899 13 C 0.028 3.972 14 N -0.797 5.797 15 Si 0.992 3.008 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.256 1.256 19 C -0.245 4.245 20 C 0.576 3.424 21 F -0.181 7.181 22 F -0.168 7.168 23 F -0.176 7.176 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.146 0.854 28 H 0.092 0.908 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 -2.762 -1.405 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.158 4.158 3 H 0.105 0.895 4 C -0.181 4.181 5 C -0.059 4.059 6 H 0.167 0.833 7 N -0.113 5.113 8 N -0.070 5.070 9 N -0.149 5.149 10 C 0.040 3.960 11 C -0.500 4.500 12 H 0.119 0.881 13 C -0.191 4.191 14 N -0.421 5.421 15 Si 0.812 3.188 16 H -0.180 1.180 17 H -0.192 1.192 18 H -0.180 1.180 19 C -0.374 4.374 20 C 0.519 3.481 21 F -0.163 7.163 22 F -0.149 7.149 23 F -0.157 7.157 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.163 0.837 28 H 0.110 0.890 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.636 -2.284 -2.816 11.237 hybrid contribution 0.086 -0.212 1.536 1.553 sum -10.551 -2.496 -1.280 10.917 Atomic orbital electron populations 1.21395 0.88962 1.04014 1.02714 1.22925 0.97583 0.93912 1.01420 0.89534 1.23587 1.03129 1.01432 0.89938 1.22418 0.84157 1.04613 0.94701 0.83310 1.48921 1.11303 1.47410 1.03638 1.81275 0.88235 1.17008 1.20478 1.75200 1.20494 1.19935 0.99226 1.19369 0.88137 0.95026 0.93473 1.19328 0.97655 1.40837 0.92208 0.88090 1.26925 0.97999 0.92066 1.02129 1.70105 1.12687 1.28920 1.30417 0.85097 0.77095 0.80137 0.76496 1.17981 1.19235 1.17987 1.21117 0.99366 1.30372 0.86557 1.16471 0.77316 0.74598 0.79702 1.93179 1.95836 1.31273 1.96008 1.93148 1.92977 1.82197 1.46592 1.93127 1.38496 1.92841 1.91252 0.89980 0.90270 0.92034 0.83654 0.88980 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 10.19 71.98 0.73 -1.37 15 2 C -0.14 -3.72 6.33 -10.79 -0.07 -3.79 15 3 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 4 C -0.14 -3.74 9.84 30.59 0.30 -3.44 15 5 C 0.04 1.47 5.60 44.99 0.25 1.72 15 6 H 0.15 4.35 7.22 -2.39 -0.02 4.33 15 7 N -0.31 -14.25 3.96 -311.26 -1.23 -15.49 15 8 N -0.09 -4.84 13.19 37.02 0.49 -4.35 15 9 N -0.28 -16.18 10.55 -52.52 -0.55 -16.73 15 10 C 0.17 9.55 6.70 39.67 0.27 9.81 15 11 C -0.47 -25.58 8.81 23.43 0.21 -25.37 15 12 H 0.10 5.20 6.13 -2.91 -0.02 5.18 15 13 C 0.03 1.43 5.49 85.18 0.47 1.90 15 14 N -0.80 -44.21 11.92 21.80 0.26 -43.95 15 15 Si 0.99 38.86 29.56 68.60 2.03 40.88 15 16 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 17 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 19 C -0.25 -12.02 6.55 42.25 0.28 -11.74 15 20 C 0.58 23.99 3.39 71.23 0.24 24.23 15 21 F -0.18 -7.25 17.30 44.97 0.78 -6.47 15 22 F -0.17 -7.15 15.01 44.97 0.68 -6.48 15 23 F -0.18 -6.29 15.32 44.97 0.69 -5.61 15 24 H 0.08 1.16 7.90 -2.39 -0.02 1.14 15 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 15 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 15 27 H 0.15 2.58 8.05 -2.39 -0.02 2.56 15 28 H 0.09 2.80 7.85 -2.39 -0.02 2.78 15 29 H 0.29 14.36 8.30 -92.71 -0.77 13.59 15 Total: -1.00 -65.59 270.92 7.01 -58.58 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.20 Total: 7.66 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 2.68 Total: -8.05 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.04 Total: -80.52 kcal Atomic # 9 Polarization: -20.70 SS G_CDS: 2.14 Total: -18.55 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -65.59 7.01 -58.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.267 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds