Wall clock time and date at job start Mon Mar 30 2020 04:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 108.90254 * 2 1 4 4 C 1.46899 * 110.99817 * 54.13615 * 3 2 1 5 5 C 1.53004 * 109.46946 * 174.42439 * 4 3 2 6 6 C 1.52995 * 109.47007 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47163 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99648 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99917 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00031 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99776 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47077 * 90.00341 * 11 9 7 13 13 H 1.48503 * 109.46719 * 209.99904 * 11 9 7 14 14 H 1.48493 * 109.47214 * 329.99857 * 11 9 7 15 15 C 1.52983 * 108.82386 * 241.37776 * 2 1 3 16 16 C 1.55096 * 108.66331 * 209.40802 * 15 2 1 17 17 S 1.83840 * 101.19287 * 41.87305 * 16 15 2 18 18 O 1.42102 * 109.61386 * 211.04912 * 17 16 15 19 19 O 1.42096 * 109.61312 * 77.09440 * 17 16 15 20 20 C 1.53623 * 108.93376 * 118.68294 * 2 1 3 21 21 H 1.08996 * 109.47312 * 59.30273 * 1 2 3 22 22 H 1.08998 * 109.47195 * 179.29882 * 1 2 3 23 23 H 1.09002 * 109.47178 * 299.29957 * 1 2 3 24 24 H 1.00900 * 111.00564 * 178.09724 * 3 2 1 25 25 H 1.08992 * 109.46969 * 54.42184 * 4 3 2 26 26 H 1.08997 * 109.47214 * 294.42001 * 4 3 2 27 27 H 1.08992 * 109.47495 * 60.00067 * 5 4 3 28 28 H 1.08997 * 109.46807 * 299.99812 * 5 4 3 29 29 H 1.09006 * 109.47226 * 299.99942 * 6 5 4 30 30 H 1.09002 * 109.47687 * 59.99761 * 6 5 4 31 31 H 0.97010 * 120.00027 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.65237 * 329.24724 * 15 2 1 33 33 H 1.08995 * 109.65036 * 89.56661 * 15 2 1 34 34 H 1.08996 * 111.07655 * 283.88816 * 16 15 2 35 35 H 1.09004 * 111.10872 * 159.86703 * 16 15 2 36 36 H 1.08994 * 110.27091 * 241.93078 * 20 2 1 37 37 H 1.08998 * 110.26994 * 4.00143 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0058 1.3898 0.0000 4 6 1.4162 2.1481 1.1114 5 6 2.0384 3.5450 1.1624 6 6 1.4248 4.3345 2.3204 7 6 2.0380 5.7102 2.3711 8 1 2.7899 5.9931 1.6492 9 6 1.6384 6.6079 3.3383 10 7 0.7225 6.2635 4.2169 11 14 2.3991 8.3129 3.4015 12 1 1.6012 9.2423 2.5620 13 1 2.4095 8.7984 4.8048 14 1 3.7911 8.2532 2.8880 15 6 2.0236 -0.6936 -1.2711 16 6 3.3953 -1.3542 -0.9752 17 16 3.0953 -2.0685 0.6919 18 8 4.3081 -2.0772 1.4325 19 8 2.3232 -3.2552 0.5705 20 6 2.0284 -0.6974 1.2748 21 1 -0.3634 0.5246 -0.8836 22 1 -0.3633 -1.0276 -0.0126 23 1 -0.3634 0.5029 0.8962 24 1 3.0137 1.4270 0.0313 25 1 1.6116 1.6288 2.0495 26 1 0.3401 2.2349 0.9615 27 1 1.8430 4.0643 0.2243 28 1 3.1145 3.4581 1.3124 29 1 0.3485 4.4214 2.1710 30 1 1.6205 3.8151 3.2585 31 1 0.4411 6.8952 4.8972 32 1 1.3069 -1.4569 -1.5740 33 1 2.1345 0.0400 -2.0695 34 1 4.1906 -0.6095 -0.9454 35 1 3.6198 -2.1352 -1.7018 36 1 2.6060 -0.0025 1.8842 37 1 1.1861 -1.0903 1.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044929931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:45 Heat of formation + Delta-G solvation = -108.567117 kcal Electronic energy + Delta-G solvation = -18021.515063 eV Core-core repulsion = 15117.481946 eV Total energy + Delta-G solvation = -2904.033116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98672 -38.12560 -37.07706 -36.29624 -34.53782 -32.42722 -30.77292 -28.86324 -27.90464 -25.40007 -23.91732 -21.87126 -20.53893 -19.86598 -18.48099 -17.79017 -17.47175 -17.01364 -16.54571 -16.38733 -15.93782 -15.56993 -15.01765 -14.65085 -14.37539 -14.08779 -13.77951 -13.64665 -13.28680 -13.22516 -13.13558 -12.86228 -12.77059 -12.66725 -12.51959 -12.38659 -12.11147 -12.03107 -11.57362 -11.49926 -11.32314 -11.15320 -11.03993 -10.55126 -9.46314 -8.20323 -6.31083 -0.90187 1.40406 1.41406 1.52496 1.55556 2.40889 2.62655 2.97562 3.09362 3.13323 3.47571 3.63426 3.76750 3.90272 4.06571 4.29689 4.38751 4.50965 4.60121 4.69021 4.75881 4.80380 4.93365 4.97928 5.01755 5.18158 5.24721 5.27278 5.36304 5.53259 5.76230 5.86764 6.01866 6.26895 6.45602 6.86527 7.38494 8.91457 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.037430 B = 0.003824 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.888088 B = 7320.726306 C = 7486.043636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.121 3.879 3 N -0.670 5.670 4 C 0.063 3.937 5 C -0.097 4.097 6 C 0.024 3.976 7 C -0.542 4.542 8 H 0.060 0.940 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.964 3.036 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.263 1.263 15 C -0.112 4.112 16 C -0.552 4.552 17 S 2.384 3.616 18 O -0.986 6.986 19 O -0.968 6.968 20 C -0.622 4.622 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.348 0.652 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.051 0.949 29 H -0.009 1.009 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.135 0.865 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -16.228 -12.787 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 N -0.301 5.301 4 C -0.066 4.066 5 C -0.135 4.135 6 C -0.014 4.014 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.187 1.187 15 C -0.151 4.151 16 C -0.686 4.686 17 S 2.572 3.428 18 O -0.983 6.983 19 O -0.966 6.966 20 C -0.753 4.753 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.071 0.929 24 H 0.167 0.833 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.010 0.990 30 H 0.007 0.993 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.172 0.828 35 H 0.183 0.817 36 H 0.153 0.847 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.533 -16.839 -12.621 21.196 hybrid contribution 0.307 1.401 1.243 1.898 sum 2.840 -15.438 -11.378 19.387 Atomic orbital electron populations 1.22135 0.92154 1.03333 1.03208 1.21194 0.97658 0.88198 0.90166 1.60792 1.13346 1.10295 1.45680 1.21982 0.99720 0.93186 0.91715 1.21427 0.99080 0.94446 0.98557 1.18974 0.94837 0.94172 0.93368 1.21719 1.22628 0.99612 1.14092 0.92176 1.25974 0.95563 1.03142 0.95176 1.70095 1.32018 1.37191 1.18161 0.85467 0.79205 0.79157 0.77347 1.19742 1.20878 1.18710 1.22250 0.93321 1.01848 0.97690 1.30466 1.06027 1.13234 1.18827 1.09092 0.75491 0.77419 0.80793 1.93556 1.45164 1.87968 1.71649 1.93568 1.71695 1.44448 1.86839 1.31223 1.16600 1.18637 1.08883 0.90643 0.89937 0.92908 0.83294 0.95234 0.91213 0.92570 0.93026 0.99039 0.99254 0.92833 0.87065 0.85903 0.82759 0.81748 0.84678 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.46 71.98 0.54 -2.08 16 2 C 0.12 2.03 0.83 3.73 0.00 2.03 16 3 N -0.67 -14.59 5.92 -469.19 -2.78 -17.37 16 4 C 0.06 1.90 4.69 86.30 0.41 2.30 16 5 C -0.10 -3.76 5.36 30.59 0.16 -3.59 16 6 C 0.02 1.25 4.97 29.85 0.15 1.40 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 10 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 11 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 C -0.11 -1.20 5.47 31.31 0.17 -1.03 16 16 C -0.55 -5.11 7.46 72.70 0.54 -4.57 16 17 S 2.38 41.91 6.05 -56.49 -0.34 41.57 16 18 O -0.99 -26.04 18.16 -127.52 -2.32 -28.35 16 19 O -0.97 -22.88 18.16 -127.52 -2.32 -25.19 16 20 C -0.62 -10.87 5.92 72.19 0.43 -10.45 16 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.08 1.11 8.11 -2.39 -0.02 1.09 16 23 H 0.05 1.10 6.44 -2.39 -0.02 1.08 16 24 H 0.35 6.68 8.67 -89.69 -0.78 5.90 16 25 H 0.03 0.90 6.40 -2.39 -0.02 0.89 16 26 H 0.07 2.19 6.53 -2.39 -0.02 2.18 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 32 H 0.11 0.86 7.81 -2.39 -0.02 0.84 16 33 H 0.12 1.20 8.02 -2.39 -0.02 1.18 16 34 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.16 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.14 2.60 6.63 -2.39 -0.02 2.58 16 37 H 0.15 2.36 7.63 -2.39 -0.02 2.34 16 Total: -1.00 -76.26 308.44 -2.07 -78.33 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.28 Total: 7.47 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 3.09 Total: -46.02 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -2.49 Total: -73.90 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -4.63 Total: -53.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 41.91 SS G_CDS: -0.34 Total: 41.57 kcal Total: -76.26 -2.07 -78.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044929931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.239 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds