Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47082 * 240.00075 * 2 1 3 5 5 C 1.52999 * 109.46603 * 120.00158 * 2 1 3 6 6 H 1.08999 * 109.47199 * 299.99594 * 5 2 1 7 7 N 1.46497 * 109.47595 * 60.00195 * 5 2 1 8 8 S 1.65600 * 120.00231 * 232.95262 * 7 5 2 9 9 O 1.42095 * 106.39970 * 178.32779 * 8 7 5 10 10 O 1.42100 * 106.39722 * 311.24690 * 8 7 5 11 11 C 1.76203 * 107.21623 * 64.78523 * 8 7 5 12 12 H 1.07997 * 119.99835 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99556 * 180.02562 * 11 8 7 14 14 N 1.31520 * 120.00472 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99834 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47286 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47685 * 119.99834 * 15 13 11 18 18 H 1.48502 * 109.46996 * 239.99834 * 15 13 11 19 19 C 1.53003 * 109.46603 * 179.97438 * 5 2 1 20 20 C 1.53002 * 117.50015 * 247.21822 * 19 5 2 21 21 C 1.53003 * 117.49653 * 178.55722 * 19 5 2 22 22 H 1.08996 * 109.47739 * 300.00086 * 1 2 3 23 23 H 1.09007 * 109.47092 * 59.99913 * 1 2 3 24 24 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46734 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47290 * 299.99853 * 3 2 1 27 27 H 1.09005 * 109.47033 * 60.00262 * 3 2 1 28 28 H 1.09000 * 109.47365 * 300.00201 * 4 2 1 29 29 H 1.09001 * 109.47468 * 60.00321 * 4 2 1 30 30 H 1.09004 * 109.46949 * 180.02562 * 4 2 1 31 31 H 0.97002 * 119.99788 * 52.94627 * 7 5 2 32 32 H 0.97000 * 119.99848 * 180.02562 * 14 13 11 33 33 H 1.08997 * 115.54953 * 32.89592 * 19 5 2 34 34 H 1.08999 * 117.49647 * 0.02562 * 20 19 5 35 35 H 1.09002 * 117.49498 * 145.02528 * 20 19 5 36 36 H 1.08997 * 117.50258 * 214.98132 * 21 19 5 37 37 H 1.09003 * 117.50005 * 359.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 1.6766 -0.2075 2.1392 7 7 1.5516 -2.1025 1.2493 8 16 0.7482 -2.6968 2.5698 9 8 0.3763 -4.0296 2.2468 10 8 1.5376 -2.3630 3.7032 11 6 -0.7516 -1.7845 2.7219 12 1 -0.9831 -1.0039 2.0124 13 6 -1.6296 -2.0675 3.7466 14 7 -1.3479 -3.0185 4.6102 15 14 -3.2199 -1.1009 3.9075 16 1 -3.2998 -0.0943 2.8185 17 1 -4.3752 -2.0288 3.8101 18 1 -3.2489 -0.4107 5.2220 19 6 3.5699 -0.7219 1.2489 20 6 4.2759 -2.0685 1.0784 21 6 4.2763 -1.3708 2.4409 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1393 30 1 3.1300 -0.7216 -1.2490 31 1 1.6988 -2.6689 0.4757 32 1 -1.9658 -3.2178 5.3309 33 1 4.0402 0.1533 0.8007 34 1 3.6503 -2.9540 0.9660 35 1 5.2109 -2.0792 0.5183 36 1 5.2116 -0.9228 2.7766 37 1 3.6511 -1.7969 3.2256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324067162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -82.494249 kcal Electronic energy + Delta-G solvation = -19493.733272 eV Core-core repulsion = 16590.830760 eV Total energy + Delta-G solvation = -2902.902512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.03853 -35.44212 -35.09341 -33.89674 -33.08439 -32.11378 -27.24170 -27.12435 -25.97132 -25.59083 -21.89751 -20.47667 -18.99475 -18.42102 -17.37052 -16.13904 -15.68481 -15.51780 -14.80145 -14.21332 -13.89479 -13.78658 -13.46816 -13.25304 -12.49743 -12.11903 -12.03942 -11.94822 -11.51799 -11.31812 -11.22851 -11.05275 -11.02467 -10.89308 -10.58562 -10.47219 -10.40782 -10.22090 -10.12370 -10.06114 -9.79367 -9.47032 -9.22621 -8.87318 -8.43393 -6.67224 -5.27740 2.39997 3.06276 3.15190 3.21603 4.07762 4.23653 4.67004 4.74468 4.97718 5.08745 5.23130 5.38763 5.45251 5.50072 5.66638 5.80758 5.84553 5.92312 5.93647 6.03618 6.06784 6.10997 6.19829 6.28161 6.32738 6.41450 6.49484 6.56156 6.57882 6.65455 6.79952 6.85903 7.04495 7.37460 7.97980 8.05366 8.93314 10.26899 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.009324 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.510990 B = 3002.305698 C = 3688.396520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.137 4.137 5 C 0.202 3.798 6 H 0.095 0.905 7 N -1.127 6.127 8 S 2.711 3.289 9 O -1.011 7.011 10 O -1.004 7.004 11 C -1.022 5.022 12 H 0.111 0.889 13 C 0.134 3.866 14 N -0.846 5.846 15 Si 0.916 3.084 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.272 1.272 19 C -0.165 4.165 20 C -0.179 4.179 21 C -0.187 4.187 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.400 0.600 32 H 0.289 0.711 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 7.279 -8.928 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.195 4.195 5 C 0.093 3.907 6 H 0.112 0.888 7 N -0.881 5.881 8 S 2.811 3.189 9 O -1.002 7.002 10 O -0.994 6.994 11 C -1.156 5.156 12 H 0.129 0.871 13 C -0.084 4.084 14 N -0.476 5.476 15 Si 0.740 3.260 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.185 4.185 20 C -0.216 4.216 21 C -0.224 4.224 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.233 0.767 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.351 6.560 -8.045 12.170 hybrid contribution -1.188 0.683 -0.415 1.432 sum 5.163 7.243 -8.461 12.276 Atomic orbital electron populations 1.22006 0.93956 1.03125 1.01298 1.20810 0.96246 0.94972 0.95479 1.21926 1.00854 0.95485 1.01692 1.21822 1.00872 1.00391 0.96387 1.20063 0.90396 0.82359 0.97886 0.88753 1.56121 1.75027 1.20504 1.36408 1.00480 0.74587 0.73189 0.70598 1.93369 1.84609 1.38359 1.83837 1.93331 1.71781 1.85148 1.49158 1.30773 1.26537 1.35908 1.22365 0.87116 1.24725 0.98782 0.92687 0.92166 1.69916 1.37454 1.26674 1.13583 0.86201 0.80795 0.80029 0.78961 1.18539 1.19742 1.19719 1.22810 0.95182 0.96611 1.03866 1.22881 1.01358 0.96581 1.00811 1.23263 1.02217 1.04060 0.92822 0.91953 0.93451 0.91286 0.92485 0.92905 0.92408 0.92515 0.93310 0.92526 0.76750 0.90077 0.87573 0.88719 0.89847 0.89732 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 7.24 37.16 0.27 -1.97 16 2 C -0.07 -1.02 0.62 -154.51 -0.10 -1.11 16 3 C -0.14 -1.66 8.23 37.16 0.31 -1.36 16 4 C -0.14 -1.69 8.01 37.16 0.30 -1.39 16 5 C 0.20 3.36 1.88 -67.93 -0.13 3.23 16 6 H 0.09 1.76 7.80 -51.93 -0.40 1.35 16 7 N -1.13 -21.53 3.17 -4.89 -0.02 -21.55 16 8 S 2.71 69.90 4.87 -107.50 -0.52 69.38 16 9 O -1.01 -29.50 18.02 -57.17 -1.03 -30.53 16 10 O -1.00 -28.16 15.74 -57.17 -0.90 -29.06 16 11 C -1.02 -27.19 9.70 30.60 0.30 -26.90 16 12 H 0.11 2.65 4.93 -52.49 -0.26 2.39 16 13 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 14 N -0.85 -24.75 13.19 55.43 0.73 -24.02 16 15 Si 0.92 20.39 29.54 -169.99 -5.02 15.36 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.16 -2.44 4.24 -90.62 -0.38 -2.82 16 20 C -0.18 -2.63 9.83 -26.69 -0.26 -2.89 16 21 C -0.19 -3.06 10.19 -26.69 -0.27 -3.33 16 22 H 0.06 1.01 7.20 -51.93 -0.37 0.64 16 23 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.07 1.16 7.06 -51.93 -0.37 0.80 16 25 H 0.06 0.60 6.15 -51.93 -0.32 0.29 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.72 6.73 -51.93 -0.35 0.37 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.65 7.21 -51.93 -0.37 0.27 16 31 H 0.40 6.80 6.63 -34.47 -0.23 6.57 16 32 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.11 1.33 6.07 -51.93 -0.32 1.01 16 34 H 0.09 1.49 6.51 -51.93 -0.34 1.15 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.12 2.45 6.07 -51.93 -0.32 2.14 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -33.00 300.79 -7.61 -40.61 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.32 Total: 10.22 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: -0.07 Total: -34.95 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.72 Total: -45.56 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -1.93 Total: -59.59 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 69.90 SS G_CDS: -0.52 Total: 69.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.00 -7.61 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324067162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.883 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds