Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47082 * 240.00075 * 2 1 3 5 5 C 1.52999 * 109.46603 * 120.00158 * 2 1 3 6 6 H 1.08999 * 109.47199 * 299.99594 * 5 2 1 7 7 N 1.46497 * 109.47595 * 60.00195 * 5 2 1 8 8 S 1.65600 * 120.00231 * 232.95262 * 7 5 2 9 9 O 1.42095 * 106.39970 * 178.32779 * 8 7 5 10 10 O 1.42100 * 106.39722 * 311.24690 * 8 7 5 11 11 C 1.76203 * 107.21623 * 64.78523 * 8 7 5 12 12 H 1.07997 * 119.99835 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99556 * 180.02562 * 11 8 7 14 14 N 1.31520 * 120.00472 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99834 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47286 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47685 * 119.99834 * 15 13 11 18 18 H 1.48502 * 109.46996 * 239.99834 * 15 13 11 19 19 C 1.53003 * 109.46603 * 179.97438 * 5 2 1 20 20 C 1.53002 * 117.50015 * 247.21822 * 19 5 2 21 21 C 1.53003 * 117.49653 * 178.55722 * 19 5 2 22 22 H 1.08996 * 109.47739 * 300.00086 * 1 2 3 23 23 H 1.09007 * 109.47092 * 59.99913 * 1 2 3 24 24 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46734 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47290 * 299.99853 * 3 2 1 27 27 H 1.09005 * 109.47033 * 60.00262 * 3 2 1 28 28 H 1.09000 * 109.47365 * 300.00201 * 4 2 1 29 29 H 1.09001 * 109.47468 * 60.00321 * 4 2 1 30 30 H 1.09004 * 109.46949 * 180.02562 * 4 2 1 31 31 H 0.97002 * 119.99788 * 52.94627 * 7 5 2 32 32 H 0.97000 * 119.99848 * 180.02562 * 14 13 11 33 33 H 1.08997 * 115.54953 * 32.89592 * 19 5 2 34 34 H 1.08999 * 117.49647 * 0.02562 * 20 19 5 35 35 H 1.09002 * 117.49498 * 145.02528 * 20 19 5 36 36 H 1.08997 * 117.50258 * 214.98132 * 21 19 5 37 37 H 1.09003 * 117.50005 * 359.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 1.6766 -0.2075 2.1392 7 7 1.5516 -2.1025 1.2493 8 16 0.7482 -2.6968 2.5698 9 8 0.3763 -4.0296 2.2468 10 8 1.5376 -2.3630 3.7032 11 6 -0.7516 -1.7845 2.7219 12 1 -0.9831 -1.0039 2.0124 13 6 -1.6296 -2.0675 3.7466 14 7 -1.3479 -3.0185 4.6102 15 14 -3.2199 -1.1009 3.9075 16 1 -3.2998 -0.0943 2.8185 17 1 -4.3752 -2.0288 3.8101 18 1 -3.2489 -0.4107 5.2220 19 6 3.5699 -0.7219 1.2489 20 6 4.2759 -2.0685 1.0784 21 6 4.2763 -1.3708 2.4409 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1393 30 1 3.1300 -0.7216 -1.2490 31 1 1.6988 -2.6689 0.4757 32 1 -1.9658 -3.2178 5.3309 33 1 4.0402 0.1533 0.8007 34 1 3.6503 -2.9540 0.9660 35 1 5.2109 -2.0792 0.5183 36 1 5.2116 -0.9228 2.7766 37 1 3.6511 -1.7969 3.2256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324067162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -106.498831 kcal Electronic energy + Delta-G solvation = -19494.774189 eV Core-core repulsion = 16590.830760 eV Total energy + Delta-G solvation = -2903.943429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29457 -37.33131 -36.56660 -36.06213 -35.16212 -33.62843 -28.61961 -28.19839 -27.76409 -26.87867 -23.14280 -21.69937 -20.99344 -19.70299 -19.26285 -18.11515 -17.24461 -16.87624 -16.59870 -15.86510 -15.48199 -15.27803 -15.02075 -14.40710 -13.98862 -13.74329 -13.37246 -13.32587 -13.03332 -12.80666 -12.63345 -12.48526 -12.44061 -12.41519 -12.33332 -12.19327 -12.08827 -11.89474 -11.52841 -11.35246 -11.25188 -11.09636 -10.84961 -10.66494 -10.04060 -8.72686 -7.42923 0.42311 1.32054 1.33657 1.50396 2.21218 2.60793 2.94162 3.10926 3.72537 3.75202 3.96809 4.09360 4.25472 4.30824 4.32233 4.41643 4.59596 4.68279 4.76820 4.90090 4.92343 4.96367 5.07366 5.12707 5.15825 5.21628 5.26876 5.34319 5.35484 5.41802 5.48043 5.52427 5.64247 5.71908 6.00393 6.46644 6.83186 8.23683 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.009324 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.510990 B = 3002.305698 C = 3688.396520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.136 4.136 5 C 0.191 3.809 6 H 0.068 0.932 7 N -1.109 6.109 8 S 2.715 3.285 9 O -1.054 7.054 10 O -1.036 7.036 11 C -1.037 5.037 12 H 0.131 0.869 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.984 3.016 16 H -0.243 1.243 17 H -0.263 1.263 18 H -0.261 1.261 19 C -0.152 4.152 20 C -0.170 4.170 21 C -0.211 4.211 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.412 0.588 32 H 0.296 0.704 33 H 0.143 0.857 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 9.619 -11.160 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.194 4.194 5 C 0.084 3.916 6 H 0.086 0.914 7 N -0.868 5.868 8 S 2.817 3.183 9 O -1.045 7.045 10 O -1.026 7.026 11 C -1.171 5.171 12 H 0.149 0.851 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.802 3.198 16 H -0.166 1.166 17 H -0.187 1.187 18 H -0.186 1.186 19 C -0.172 4.172 20 C -0.207 4.207 21 C -0.249 4.249 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.106 0.894 33 H 0.160 0.840 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.710 8.890 -10.290 15.164 hybrid contribution -1.228 -0.049 0.253 1.254 sum 5.483 8.841 -10.038 14.456 Atomic orbital electron populations 1.22035 0.95251 1.01768 1.01773 1.20789 0.95222 0.96418 0.94536 1.21923 1.01913 0.93494 1.02380 1.21828 1.01805 0.99705 0.96023 1.20353 0.92058 0.80561 0.98673 0.91409 1.55470 1.74344 1.21997 1.34970 0.99977 0.74683 0.72499 0.71181 1.93298 1.85393 1.41067 1.84714 1.93295 1.72379 1.85354 1.51569 1.31132 1.26836 1.36257 1.22829 0.85072 1.25968 1.02979 0.93598 0.91597 1.70020 1.39375 1.28777 1.14765 0.85191 0.75783 0.78902 0.79898 1.16597 1.18726 1.18589 1.22872 0.93586 0.98040 1.02668 1.22966 1.02440 0.95737 0.99559 1.23211 1.03055 1.05914 0.92671 0.93541 0.90888 0.93551 0.90794 0.90934 0.93094 0.93609 0.91375 0.91057 0.75306 0.89399 0.83991 0.90470 0.86400 0.87260 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 7.24 71.98 0.52 -3.84 16 2 C -0.07 -1.72 0.62 -52.18 -0.03 -1.75 16 3 C -0.14 -2.75 8.23 71.98 0.59 -2.16 16 4 C -0.14 -2.88 8.01 71.98 0.58 -2.30 16 5 C 0.19 6.23 1.88 44.99 0.08 6.32 16 6 H 0.07 2.58 7.80 -2.39 -0.02 2.56 16 7 N -1.11 -43.05 3.17 -169.39 -0.54 -43.59 16 8 S 2.72 145.89 4.87 -56.49 -0.27 145.62 16 9 O -1.05 -64.32 18.02 -128.00 -2.31 -66.63 16 10 O -1.04 -61.27 15.74 -128.00 -2.02 -63.29 16 11 C -1.04 -56.36 9.70 67.73 0.66 -55.70 16 12 H 0.13 6.33 4.93 -2.91 -0.01 6.31 16 13 C 0.07 3.95 5.46 84.65 0.46 4.42 16 14 N -0.90 -54.20 13.19 21.45 0.28 -53.92 16 15 Si 0.98 41.49 29.54 68.60 2.03 43.51 16 16 H -0.24 -9.42 7.11 99.48 0.71 -8.71 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 C -0.15 -4.17 4.24 -10.79 -0.05 -4.22 16 20 C -0.17 -4.67 9.83 30.62 0.30 -4.37 16 21 C -0.21 -6.83 10.19 30.62 0.31 -6.52 16 22 H 0.05 1.46 7.20 -2.39 -0.02 1.44 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.05 1.53 7.06 -2.39 -0.02 1.51 16 25 H 0.07 1.21 6.15 -2.39 -0.01 1.20 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.04 1.06 6.73 -2.39 -0.02 1.04 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.31 7.21 -2.39 -0.02 1.29 16 31 H 0.41 14.13 6.63 -96.74 -0.64 13.48 16 32 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 33 H 0.14 2.92 6.07 -2.39 -0.01 2.90 16 34 H 0.08 2.39 6.51 -2.39 -0.02 2.38 16 35 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.08 3.21 6.07 -2.39 -0.01 3.19 16 Total: -1.00 -74.77 300.79 1.04 -73.74 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.43 Total: 34.68 kcal Atomic # 6 Polarization: -73.56 SS G_CDS: 3.43 Total: -70.13 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -0.25 Total: -97.50 kcal Atomic # 8 Polarization: -125.59 SS G_CDS: -4.32 Total: -129.91 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 145.89 SS G_CDS: -0.27 Total: 145.62 kcal Total: -74.77 1.04 -73.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324067162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.762 kcal (2) G-P(sol) polarization free energy of solvation -74.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds