Wall clock time and date at job start Mon Mar 30 2020 04:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47114 * 2 1 4 4 C 1.52997 * 109.47442 * 120.00088 * 2 1 3 5 5 C 1.53001 * 109.47190 * 64.99528 * 4 2 1 6 6 H 1.09010 * 115.54694 * 29.33173 * 5 4 2 7 7 C 1.53073 * 117.51637 * 243.61280 * 5 4 2 8 8 C 1.52993 * 117.50262 * 175.00012 * 5 4 2 9 9 H 1.09003 * 117.49966 * 0.02562 * 8 5 4 10 10 C 1.52999 * 117.50281 * 215.00564 * 8 5 4 11 11 N 1.46506 * 109.47246 * 175.08476 * 10 8 5 12 12 S 1.65601 * 119.99895 * 165.00171 * 11 10 8 13 13 O 1.42102 * 106.40098 * 311.46238 * 12 11 10 14 14 O 1.42098 * 106.40172 * 178.54327 * 12 11 10 15 15 C 1.76193 * 107.21727 * 65.00063 * 12 11 10 16 16 H 1.07999 * 120.00769 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99923 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 12 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 H 1.09000 * 109.46930 * 59.99829 * 1 2 3 24 24 H 1.08999 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47100 * 299.99788 * 1 2 3 26 26 H 1.08999 * 109.47100 * 240.00212 * 2 1 3 27 27 H 1.09003 * 109.46909 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47362 * 299.99906 * 3 2 1 29 29 H 1.08999 * 109.46964 * 60.00129 * 3 2 1 30 30 H 1.09006 * 109.47070 * 305.00288 * 4 2 1 31 31 H 1.08989 * 109.47533 * 184.99860 * 4 2 1 32 32 H 1.09000 * 117.51168 * 145.04733 * 7 5 4 33 33 H 1.08994 * 117.49591 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.46922 * 55.08880 * 10 8 5 35 35 H 1.09000 * 109.47209 * 295.09006 * 10 8 5 36 36 H 0.96996 * 119.99728 * 345.00595 * 11 10 8 37 37 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 1 1.5391 -2.6154 0.1866 7 6 0.6789 -2.7115 2.2660 8 6 2.1539 -3.1170 2.2936 9 1 2.7832 -2.6730 3.0650 10 6 2.4979 -4.5574 1.9093 11 7 3.0836 -5.2442 3.0633 12 16 3.2108 -6.8953 3.0673 13 8 1.9400 -7.3967 2.6761 14 8 3.8416 -7.2462 4.2913 15 6 4.3355 -7.3347 1.7841 16 1 4.7903 -6.5655 1.1776 17 6 4.6358 -8.6608 1.5548 18 7 5.4757 -8.9888 0.5974 19 14 3.8499 -9.9914 2.6042 20 1 2.5767 -10.4287 1.9772 21 1 3.5745 -9.4538 3.9608 22 1 4.7735 -11.1495 2.7088 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2618 2.1370 31 1 3.1263 -0.6444 1.2951 32 1 -0.0464 -3.4710 1.9739 33 1 0.3379 -2.0005 3.0184 34 1 3.2139 -4.5530 1.0874 35 1 1.5915 -5.0770 1.5987 36 1 3.3966 -4.7318 3.8250 37 1 5.6867 -9.9217 0.4359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395594366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:52 Heat of formation + Delta-G solvation = -107.138107 kcal Electronic energy + Delta-G solvation = -17717.978385 eV Core-core repulsion = 14814.007235 eV Total energy + Delta-G solvation = -2903.971150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.54952 -37.68441 -36.69366 -36.49084 -35.20246 -34.77790 -28.72979 -28.54400 -27.91578 -26.62208 -22.28912 -21.69448 -20.88118 -20.78573 -19.43264 -18.53636 -17.47471 -16.91546 -16.16752 -15.93064 -15.48960 -15.29501 -15.22267 -14.99955 -14.62498 -14.36582 -13.73018 -13.57514 -13.40997 -13.11542 -12.94797 -12.74856 -12.69389 -12.56483 -12.28887 -12.25834 -11.92836 -11.86291 -11.66949 -11.44313 -11.33746 -11.27989 -10.86795 -10.57776 -10.11274 -8.96640 -7.52919 0.15810 1.05554 1.14996 1.22442 1.89654 2.41578 2.55084 2.91157 3.30563 3.61226 3.92366 3.97703 4.16334 4.18735 4.22389 4.34080 4.38482 4.54493 4.67013 4.82921 4.86954 4.89366 4.91084 5.00201 5.01621 5.10337 5.15082 5.24764 5.33635 5.38050 5.40319 5.47612 5.53068 5.60681 6.00732 6.33451 6.53681 8.21093 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.038850 B = 0.004239 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.541531 B = 6604.192760 C = 6868.831306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.133 4.133 6 H 0.103 0.897 7 C -0.169 4.169 8 C -0.166 4.166 9 H 0.121 0.879 10 C 0.148 3.852 11 N -1.107 6.107 12 S 2.700 3.300 13 O -1.030 7.030 14 O -1.029 7.029 15 C -1.040 5.040 16 H 0.106 0.894 17 C 0.108 3.892 18 N -0.854 5.854 19 Si 0.827 3.173 20 H -0.239 1.239 21 H -0.228 1.228 22 H -0.220 1.220 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.420 0.580 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 17.754 0.093 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.118 4.118 5 C -0.152 4.152 6 H 0.121 0.879 7 C -0.206 4.206 8 C -0.185 4.185 9 H 0.139 0.861 10 C 0.022 3.978 11 N -0.868 5.868 12 S 2.800 3.200 13 O -1.020 7.020 14 O -1.019 7.019 15 C -1.173 5.173 16 H 0.124 0.876 17 C -0.109 4.109 18 N -0.485 5.485 19 Si 0.643 3.357 20 H -0.162 1.162 21 H -0.151 1.151 22 H -0.142 1.142 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.255 0.745 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.399 16.944 0.403 18.916 hybrid contribution 0.672 -0.562 -0.177 0.894 sum -7.726 16.383 0.226 18.115 Atomic orbital electron populations 1.21831 0.94912 1.01800 1.01692 1.21115 0.96259 0.96312 0.97754 1.21830 1.00960 0.95526 1.02044 1.21253 1.00753 0.91221 0.98560 1.22526 1.02773 0.95189 0.94679 0.87875 1.23340 0.91796 1.03509 1.01907 1.22524 0.98965 0.93433 1.03627 0.86134 1.20874 0.97639 0.92222 0.87108 1.54965 1.78498 1.25344 1.28042 1.00399 0.73832 0.71847 0.73926 1.93371 1.44736 1.78936 1.84972 1.93435 1.78075 1.82471 1.47959 1.31014 1.46022 1.01729 1.38491 0.87599 1.25185 0.92014 0.99729 0.93969 1.70016 1.29311 1.21115 1.28037 0.87467 0.82221 0.83586 0.82377 1.16201 1.15084 1.14197 0.92692 0.92853 0.92498 0.91718 0.92747 0.92356 0.92364 0.91020 0.91568 0.89107 0.87179 0.92001 0.91492 0.74463 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.01 71.98 0.65 -1.43 16 2 C -0.10 -1.44 2.88 -10.79 -0.03 -1.47 16 3 C -0.15 -1.90 9.19 71.98 0.66 -1.24 16 4 C -0.08 -1.32 4.97 30.59 0.15 -1.17 16 5 C -0.13 -2.67 4.45 -10.77 -0.05 -2.72 16 6 H 0.10 2.17 8.08 -2.38 -0.02 2.15 16 7 C -0.17 -3.48 9.83 30.62 0.30 -3.18 16 8 C -0.17 -4.01 5.62 -10.80 -0.06 -4.07 16 9 H 0.12 2.60 7.98 -2.39 -0.02 2.59 16 10 C 0.15 4.86 6.50 86.38 0.56 5.42 16 11 N -1.11 -41.48 6.00 -187.48 -1.12 -42.61 16 12 S 2.70 134.48 4.24 -56.49 -0.24 134.24 16 13 O -1.03 -54.81 16.30 -128.00 -2.09 -56.89 16 14 O -1.03 -54.93 16.02 -128.00 -2.05 -56.98 16 15 C -1.04 -59.06 10.26 67.74 0.69 -58.36 16 16 H 0.11 6.14 8.06 -2.91 -0.02 6.11 16 17 C 0.11 6.25 5.47 84.65 0.46 6.71 16 18 N -0.85 -49.91 13.96 21.45 0.30 -49.61 16 19 Si 0.83 41.45 26.54 68.60 1.82 43.27 16 20 H -0.24 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.23 -11.75 5.61 99.48 0.56 -11.19 16 22 H -0.22 -9.71 7.11 99.48 0.71 -9.00 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.83 7.38 -2.39 -0.02 0.82 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.07 7.88 -2.38 -0.02 1.05 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 33 H 0.11 1.88 8.03 -2.39 -0.02 1.86 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.32 7.48 -2.39 -0.02 2.30 16 36 H 0.42 13.12 8.54 -96.75 -0.83 12.30 16 37 H 0.29 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.87 315.95 0.03 -67.84 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.06 Total: 22.26 kcal Atomic # 6 Polarization: -64.86 SS G_CDS: 3.34 Total: -61.51 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -0.83 Total: -92.22 kcal Atomic # 8 Polarization: -109.74 SS G_CDS: -4.14 Total: -113.88 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.82 Total: 43.27 kcal Atomic # 16 Polarization: 134.48 SS G_CDS: -0.24 Total: 134.24 kcal Total: -67.87 0.03 -67.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395594366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.297 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds