Wall clock time and date at job start Mon Mar 30 2020 04:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47214 * 2 1 4 4 C 1.52995 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47175 * 179.97438 * 4 3 2 6 6 S 1.81393 * 109.47501 * 179.97438 * 5 4 3 7 7 O 1.42102 * 110.54287 * 68.37682 * 6 5 4 8 8 O 1.42100 * 110.54135 * 291.62451 * 6 5 4 9 9 N 1.65596 * 104.45231 * 180.02562 * 6 5 4 10 10 C 1.47586 * 134.49190 * 89.99576 * 9 6 5 11 11 C 1.53950 * 86.11354 * 155.36007 * 10 9 6 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47813 * 134.45968 * 269.86716 * 9 6 5 21 21 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46829 * 299.99412 * 1 2 3 23 23 H 1.08995 * 109.47227 * 59.99731 * 1 2 3 24 24 H 1.08998 * 109.47311 * 240.00458 * 2 1 3 25 25 H 1.09002 * 109.47513 * 120.00039 * 2 1 3 26 26 H 1.09003 * 109.47015 * 59.99808 * 3 2 1 27 27 H 1.09002 * 109.46913 * 300.00406 * 3 2 1 28 28 H 1.08998 * 109.47540 * 60.00341 * 4 3 2 29 29 H 1.09002 * 109.47322 * 299.99899 * 4 3 2 30 30 H 1.09003 * 109.47015 * 59.99551 * 5 4 3 31 31 H 1.09002 * 109.46913 * 300.00150 * 5 4 3 32 32 H 1.09008 * 113.76654 * 41.06239 * 10 9 6 33 33 H 1.08993 * 113.87299 * 269.67717 * 10 9 6 34 34 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.09002 * 113.76703 * 90.37808 * 20 9 6 37 37 H 1.08998 * 113.83277 * 318.91786 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 16 5.8940 2.8851 -0.0013 7 8 6.3926 2.3942 -1.2381 8 8 6.3926 2.3953 1.2359 9 7 6.3072 4.4887 -0.0013 10 6 6.5652 5.4903 1.0515 11 6 7.4156 6.2241 -0.0013 12 6 7.2240 7.7189 -0.0012 13 1 6.5589 8.1781 0.7151 14 6 7.8936 8.4997 -0.9194 15 7 8.6990 7.9399 -1.7956 16 14 7.6567 10.3526 -0.9189 17 1 8.6621 10.9800 -0.0240 18 1 7.8286 10.8739 -2.2988 19 1 6.2913 10.6769 -0.4337 20 6 6.5679 5.4906 -1.0563 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9330 0.9289 -0.8909 29 1 3.9338 0.9286 0.8891 30 1 3.7170 3.3991 0.8887 31 1 3.7163 3.3986 -0.8913 32 1 7.1426 5.1053 1.8921 33 1 5.6781 6.0422 1.3622 34 1 8.4652 5.9302 0.0000 35 1 9.1698 8.4892 -2.4417 36 1 5.6805 6.0419 -1.3675 37 1 7.1473 5.1059 -1.8955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:56 Heat of formation + Delta-G solvation = -65.944993 kcal Electronic energy + Delta-G solvation = -17736.619152 eV Core-core repulsion = 14834.434270 eV Total energy + Delta-G solvation = -2902.184882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.99300 -36.62799 -36.47488 -35.49391 -32.59457 -32.45658 -28.28657 -27.12051 -25.13964 -24.49028 -22.46940 -21.28913 -19.72345 -18.12482 -17.04445 -16.58551 -16.30565 -15.84297 -15.44611 -14.59664 -14.19612 -14.17133 -13.83441 -13.57358 -13.05817 -12.71708 -12.43329 -12.18670 -11.73151 -11.70650 -11.66697 -11.62770 -11.51121 -11.27521 -11.25177 -11.21347 -10.97484 -10.78071 -10.54914 -10.32647 -10.27355 -9.26607 -9.01807 -8.58883 -8.14878 -6.13582 -4.19414 0.64809 3.10757 3.25590 3.33277 3.34971 4.16591 4.34921 4.38142 4.51806 4.66348 4.71364 4.91226 4.98284 5.17579 5.25729 5.28243 5.48299 5.56921 5.64386 5.65648 5.72565 5.80364 5.89823 6.02049 6.09370 6.21095 6.27157 6.38550 6.45396 6.75744 6.91701 7.53732 7.65628 7.84604 8.22789 8.83466 9.46408 10.95767 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.004174 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.546770 B = 6705.948813 C = 7104.053316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.642 4.642 6 S 2.613 3.387 7 O -0.961 6.961 8 O -0.966 6.966 9 N -1.034 6.034 10 C 0.119 3.881 11 C 0.040 3.960 12 C -0.520 4.520 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.129 3.871 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 -10.311 2.929 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.151 4.151 4 C -0.151 4.151 5 C -0.769 4.769 6 S 2.709 3.291 7 O -0.952 6.952 8 O -0.956 6.956 9 N -0.874 5.874 10 C -0.006 4.006 11 C 0.018 3.982 12 C -0.559 4.559 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.005 3.995 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.239 -11.259 2.766 16.859 hybrid contribution -0.946 1.328 -0.156 1.637 sum -13.185 -9.932 2.610 16.712 Atomic orbital electron populations 1.21772 0.95800 1.01566 1.01861 1.21588 0.95970 0.96840 1.02322 1.21584 0.93922 0.96970 1.02614 1.21322 0.97803 0.92654 1.03311 1.30857 1.30079 1.04825 1.11112 1.04872 0.76941 0.73278 0.73984 1.93552 1.77363 1.78919 1.45324 1.93534 1.77485 1.79136 1.45471 1.60432 1.82659 1.25017 1.19309 1.23077 0.99065 0.86387 0.92043 1.20516 0.95006 0.93984 0.88651 1.21041 1.27166 0.90573 1.17112 0.91889 1.25045 0.94570 0.98787 0.95299 1.69959 1.27914 1.35767 1.18479 0.86558 0.78621 0.85268 0.77305 1.20548 1.21219 1.19810 1.23295 0.98872 0.84985 0.92388 0.92777 0.92733 0.92718 0.91783 0.91807 0.91598 0.91563 0.90561 0.90600 0.85545 0.85436 0.91659 0.91113 0.91708 0.92622 0.91176 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.11 -1.07 5.21 -26.73 -0.14 -1.21 16 4 C -0.11 -1.27 5.22 -26.73 -0.14 -1.41 16 5 C -0.64 -8.06 6.18 37.16 0.23 -7.83 16 6 S 2.61 45.40 5.93 -107.50 -0.64 44.76 16 7 O -0.96 -19.62 18.02 -57.54 -1.04 -20.65 16 8 O -0.97 -19.07 18.02 -57.54 -1.04 -20.11 16 9 N -1.03 -19.91 4.00 -118.61 -0.47 -20.38 16 10 C 0.12 2.33 8.47 -2.96 -0.03 2.30 16 11 C 0.04 0.94 3.60 -90.84 -0.33 0.62 16 12 C -0.52 -13.13 8.77 -34.44 -0.30 -13.43 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -24.35 13.29 55.43 0.74 -23.61 16 16 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 C 0.13 2.79 8.48 -2.84 -0.02 2.76 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 31 H 0.13 1.47 8.14 -51.92 -0.42 1.05 16 32 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 34 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -30.66 323.66 -9.51 -40.17 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.30 Total: -1.51 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.62 Total: -18.54 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.26 Total: -44.00 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.07 Total: -40.76 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 45.40 SS G_CDS: -0.64 Total: 44.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.66 -9.51 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.772 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds